Wall clock time and date at job start Tue Mar 31 2020 16:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47516 * 2 1 4 4 C 1.53004 * 109.47158 * 239.99850 * 2 1 3 5 5 C 1.50693 * 109.47083 * 60.00052 * 4 2 1 6 6 H 1.07996 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99766 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46829 * 120.00562 * 9 7 5 12 12 H 1.48499 * 109.47082 * 240.00436 * 9 7 5 13 13 C 1.53007 * 109.46976 * 120.00362 * 2 1 3 14 14 N 1.46503 * 109.46690 * 299.99827 * 13 2 1 15 15 C 1.34780 * 119.99762 * 180.02562 * 14 13 2 16 16 O 1.21580 * 119.99972 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99782 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00002 * 180.02562 * 17 15 14 19 19 H 1.08999 * 115.54981 * 8.50884 * 18 17 15 20 20 C 1.53008 * 117.50030 * 222.80127 * 18 17 15 21 21 C 1.52999 * 60.00024 * 252.51127 * 20 18 17 22 22 C 1.53002 * 117.51370 * 252.52086 * 21 20 18 23 23 C 1.50697 * 117.49845 * 107.48886 * 21 20 18 24 24 C 1.38233 * 119.99927 * 226.10969 * 23 21 20 25 25 C 1.38235 * 120.00232 * 179.79072 * 24 23 21 26 26 C 1.38238 * 119.99398 * 0.46665 * 25 24 23 27 27 C 1.38229 * 120.00212 * 359.76830 * 26 25 24 28 28 C 1.38232 * 119.99967 * 46.39076 * 23 21 20 29 29 H 1.08997 * 109.47310 * 300.00286 * 1 2 3 30 30 H 1.09000 * 109.46680 * 59.99724 * 1 2 3 31 31 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47010 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46874 * 300.00027 * 3 2 1 34 34 H 1.09003 * 109.46791 * 59.99924 * 3 2 1 35 35 H 1.08995 * 109.47299 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.47020 * 300.00310 * 4 2 1 37 37 H 0.97000 * 120.00318 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47340 * 179.97438 * 13 2 1 39 39 H 1.09001 * 109.46855 * 59.99212 * 13 2 1 40 40 H 0.96999 * 119.99922 * 0.27368 * 14 13 2 41 41 H 0.97006 * 120.00228 * 0.02562 * 17 15 14 42 42 H 1.08997 * 117.49547 * 0.02562 * 20 18 17 43 43 H 1.09001 * 117.49863 * 145.01716 * 20 18 17 44 44 H 1.09005 * 109.47184 * 128.63047 * 22 21 20 45 45 H 1.09007 * 109.46889 * 248.62552 * 22 21 20 46 46 H 1.09001 * 109.47472 * 8.62845 * 22 21 20 47 47 H 1.07999 * 120.00455 * 0.02562 * 24 23 21 48 48 H 1.07999 * 120.00688 * 180.25762 * 25 24 23 49 49 H 1.08001 * 119.99802 * 179.79398 * 26 25 24 50 50 H 1.08005 * 120.00344 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00242 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8713 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2492 0.3993 -5.2572 10 1 0.4246 1.5663 -4.8531 11 1 2.4045 0.8660 -6.0650 12 1 0.4243 -0.5338 -6.0660 13 6 2.0400 -0.7214 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6696 16 8 2.5766 -1.4795 3.7811 17 7 1.4279 0.1441 4.7699 18 6 1.7827 -0.3557 6.1005 19 1 2.5259 -1.1528 6.1205 20 6 0.6785 -0.3921 7.1591 21 6 1.7944 0.6504 7.2532 22 6 2.8487 0.4606 8.3456 23 6 1.4403 2.0797 6.9328 24 6 2.2594 2.8262 6.1066 25 6 1.9323 4.1359 5.8092 26 6 0.7910 4.7021 6.3458 27 6 -0.0255 3.9571 7.1759 28 6 0.2993 2.6460 7.4698 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8617 -1.8824 -4.7336 38 1 3.1300 -0.7218 1.2491 39 1 1.6765 -1.7490 1.2492 40 1 0.9907 0.7556 2.3564 41 1 0.8693 0.9322 4.6810 42 1 -0.3119 -0.0444 6.8654 43 1 0.6951 -1.2133 7.8757 44 1 3.8437 0.5168 7.9041 45 1 2.7394 1.2438 9.0959 46 1 2.7141 -0.5138 8.8152 47 1 3.1530 2.3850 5.6904 48 1 2.5700 4.7179 5.1604 49 1 0.5372 5.7264 6.1162 50 1 -0.9169 4.3996 7.5955 51 1 -0.3385 2.0641 8.1186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588367408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:24 Heat of formation + Delta-G solvation = -17.320765 kcal Electronic energy + Delta-G solvation = -28187.103783 eV Core-core repulsion = 24471.614021 eV Total energy + Delta-G solvation = -3715.489762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46708 -40.47253 -38.88572 -38.09570 -35.24442 -34.47569 -33.57414 -31.75689 -31.35991 -29.28938 -28.93698 -27.95854 -27.46443 -24.98131 -24.02142 -23.69450 -22.69765 -21.83294 -20.48555 -20.16521 -19.01724 -18.37108 -18.01202 -17.10403 -16.58425 -16.52385 -16.06880 -15.77166 -15.76317 -15.32764 -15.23882 -14.93455 -14.66796 -14.35425 -14.26269 -14.18966 -13.93909 -13.93219 -13.70229 -13.61712 -13.03500 -12.90164 -12.73741 -12.69394 -12.61693 -12.34208 -12.27034 -12.22449 -11.98928 -11.94235 -11.73322 -11.53238 -11.43999 -11.00856 -10.89315 -10.82062 -10.51322 -10.21463 -9.80058 -9.73923 -9.38405 -8.13192 -6.20803 0.45280 0.53108 1.42191 1.43157 1.54829 1.64061 2.06118 2.44870 2.83374 2.90273 3.21445 3.23197 3.61734 3.77620 3.88990 3.97964 4.10197 4.14546 4.20657 4.23206 4.23998 4.34033 4.61202 4.67075 4.70187 4.72744 4.74196 4.81091 4.88734 4.92787 4.94686 4.97105 5.00748 5.11951 5.12903 5.18755 5.20302 5.32235 5.40251 5.48809 5.50803 5.54023 5.54552 5.59799 5.65622 5.67978 5.73612 5.81332 5.90946 5.98314 6.14287 6.32031 6.94351 7.07128 7.46851 7.57420 8.99670 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.002433 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.719080 B =11507.429757 C =12522.845613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.702 3.298 16 O -0.637 6.637 17 N -0.700 5.700 18 C 0.094 3.906 19 H 0.120 0.880 20 C -0.163 4.163 21 C -0.090 4.090 22 C -0.109 4.109 23 C -0.058 4.058 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.114 4.114 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.067 0.933 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.408 0.592 41 H 0.406 0.594 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 12.639 27.519 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.038 3.962 14 N -0.379 5.379 15 C 0.402 3.598 16 O -0.519 6.519 17 N -0.353 5.353 18 C -0.013 4.013 19 H 0.138 0.862 20 C -0.201 4.201 21 C -0.092 4.092 22 C -0.166 4.166 23 C -0.058 4.058 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.123 0.877 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.127 0.873 48 H 0.147 0.853 49 H 0.155 0.845 50 H 0.159 0.841 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.188 11.649 27.460 30.464 hybrid contribution -0.145 0.440 -1.457 1.529 sum -6.334 12.089 26.002 29.366 Atomic orbital electron populations 1.21679 0.93606 1.00947 1.01517 1.20702 0.96678 0.96278 0.92684 1.21672 0.99882 0.94634 1.01497 1.18974 0.94320 0.94235 0.92274 1.21614 1.30283 1.12012 0.91009 0.90891 1.25952 0.95698 0.95883 1.02729 1.70129 1.38855 1.25026 1.24017 0.85493 0.78040 0.78835 0.79256 1.17992 1.21090 1.21077 1.21061 0.97459 0.94934 0.82790 1.45012 1.55967 1.33475 1.03489 1.16058 0.80024 0.82501 0.81171 1.90880 1.44875 1.29592 1.86549 1.44261 1.55479 1.32331 1.03217 1.21603 1.02058 0.99806 0.77855 0.86207 1.23823 0.94641 1.00686 1.00963 1.20779 1.01016 0.88698 0.98717 1.21331 0.96347 1.02915 0.96010 1.19041 0.95511 0.93347 0.97883 1.21030 0.99545 0.94610 0.98465 1.21356 0.97907 0.95126 1.00235 1.21446 0.94735 1.00844 0.97414 1.21433 1.00246 0.94229 0.98204 1.21207 0.96520 0.95643 0.99861 0.91422 0.92502 0.94420 0.94457 0.92514 0.91441 0.99536 0.99528 0.93191 0.93862 0.93853 0.75478 0.75750 0.87655 0.86136 0.92556 0.91253 0.90625 0.87344 0.85319 0.84500 0.84105 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.42 7.65 25.60 0.20 -27.22 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.16 5.98 4.56 86.38 0.39 6.37 16 14 N -0.72 -20.92 4.96 -478.53 -2.37 -23.29 16 15 C 0.70 21.76 8.57 179.05 1.53 23.29 16 16 O -0.64 -25.77 15.91 -3.97 -0.06 -25.84 16 17 N -0.70 -15.59 5.05 -457.81 -2.31 -17.90 16 18 C 0.09 1.87 6.10 45.00 0.27 2.15 16 19 H 0.12 2.94 7.39 -2.39 -0.02 2.92 16 20 C -0.16 -2.22 9.43 30.60 0.29 -1.93 16 21 C -0.09 -1.34 2.19 -52.93 -0.12 -1.45 16 22 C -0.11 -1.39 9.84 71.98 0.71 -0.68 16 23 C -0.06 -0.87 4.06 -19.87 -0.08 -0.95 16 24 C -0.12 -2.00 9.01 22.27 0.20 -1.80 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 27 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 28 C -0.11 -1.45 9.34 22.27 0.21 -1.24 16 29 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 30 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 34 H 0.07 1.74 6.87 -2.39 -0.02 1.73 16 35 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.41 9.31 6.18 -92.71 -0.57 8.74 16 41 H 0.41 7.36 7.65 -92.70 -0.71 6.65 16 42 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 43 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 46 H 0.07 0.79 7.90 -2.39 -0.02 0.77 16 47 H 0.11 2.07 8.06 -2.91 -0.02 2.04 16 48 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 49 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 50 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 51 H 0.14 1.30 7.94 -2.91 -0.02 1.28 16 Total: -1.00 -70.71 408.46 3.19 -67.51 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.36 Total: 25.79 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 5.99 Total: -14.87 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.40 Total: -98.29 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.71 3.19 -67.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.191 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds