Wall clock time and date at job start Tue Mar 31 2020 16:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.52994 * 109.47595 * 239.99945 * 2 1 3 5 5 C 1.50705 * 109.47173 * 59.99342 * 4 2 1 6 6 H 1.08003 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99816 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00539 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47488 * 89.99565 * 9 7 5 11 11 H 1.48502 * 109.47354 * 209.99978 * 9 7 5 12 12 H 1.48502 * 109.47236 * 329.99656 * 9 7 5 13 13 C 1.53001 * 109.47580 * 119.99401 * 2 1 3 14 14 N 1.46498 * 109.47408 * 300.00729 * 13 2 1 15 15 C 1.34770 * 120.00424 * 179.97438 * 14 13 2 16 16 O 1.21589 * 119.99824 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00089 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99533 * 179.97438 * 17 15 14 19 19 H 1.09000 * 115.56842 * 9.31766 * 18 17 15 20 20 C 1.53005 * 117.49711 * 223.62007 * 18 17 15 21 21 C 1.53000 * 60.00102 * 252.51547 * 20 18 17 22 22 C 1.52999 * 117.49956 * 107.51548 * 21 20 18 23 23 C 1.50706 * 117.50081 * 252.51372 * 21 20 18 24 24 C 1.38237 * 119.99761 * 248.61187 * 23 21 20 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 21 26 26 C 1.38234 * 120.00220 * 359.94731 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00191 * 68.58289 * 23 21 20 29 29 H 1.08995 * 109.47227 * 300.00024 * 1 2 3 30 30 H 1.08996 * 109.47645 * 60.00412 * 1 2 3 31 31 H 1.09003 * 109.46515 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47113 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46673 * 299.99430 * 3 2 1 34 34 H 1.08995 * 109.47230 * 59.99978 * 3 2 1 35 35 H 1.08996 * 109.47722 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47000 * 299.99916 * 4 2 1 37 37 H 0.97002 * 120.00614 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47180 * 180.02562 * 13 2 1 39 39 H 1.09004 * 109.46578 * 60.00351 * 13 2 1 40 40 H 0.97005 * 120.00008 * 359.97438 * 14 13 2 41 41 H 0.96995 * 120.00293 * 0.02562 * 17 15 14 42 42 H 1.09007 * 117.49755 * 145.02991 * 20 18 17 43 43 H 1.08998 * 117.51873 * 359.97438 * 20 18 17 44 44 H 1.09007 * 109.46993 * 231.25361 * 22 21 20 45 45 H 1.09002 * 109.46938 * 351.24787 * 22 21 20 46 46 H 1.08993 * 109.47482 * 111.25612 * 22 21 20 47 47 H 1.08005 * 120.00088 * 359.96779 * 24 23 21 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99990 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6258 -1.5520 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 2.2269 1.4396 -5.6615 11 1 1.0825 -0.5806 -6.3613 12 1 -0.0596 1.0369 -4.9613 13 6 2.0401 -0.7211 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4911 3.6695 16 8 2.5753 -1.4802 3.7811 17 7 1.4280 0.1445 4.7699 18 6 1.7811 -0.3566 6.1005 19 1 2.5328 -1.1457 6.1218 20 6 0.6718 -0.4090 7.1530 21 6 1.7758 0.6452 7.2570 22 6 1.4020 2.0936 6.9358 23 6 2.8102 0.4654 8.3381 24 6 2.8523 1.3411 9.4069 25 6 3.8007 1.1758 10.3989 26 6 4.7063 0.1342 10.3227 27 6 4.6673 -0.7386 9.2515 28 6 3.7164 -0.5756 8.2614 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2491 37 1 2.8602 -1.8835 -4.7335 38 1 3.1300 -0.7207 1.2495 39 1 1.6768 -1.7488 1.2493 40 1 0.9942 0.7583 2.3564 41 1 0.8706 0.9333 4.6809 42 1 0.6937 -1.2327 7.8667 43 1 -0.3207 -0.0703 6.8559 44 1 2.1071 2.4984 6.2097 45 1 0.3946 2.1254 6.5206 46 1 1.4380 2.6890 7.8480 47 1 2.1442 2.1544 9.4669 48 1 3.8339 1.8602 11.2337 49 1 5.4471 0.0049 11.0980 50 1 5.3776 -1.5498 9.1896 51 1 3.6835 -1.2598 7.4264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588367410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:31 Heat of formation + Delta-G solvation = 2.451290 kcal Electronic energy + Delta-G solvation = -27599.096635 eV Core-core repulsion = 23884.464254 eV Total energy + Delta-G solvation = -3714.632381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56575 -39.57377 -37.86500 -36.92603 -33.70639 -33.15241 -31.98401 -31.33415 -30.46149 -28.75160 -27.10462 -26.51072 -26.08905 -23.46168 -23.25290 -22.78831 -21.88304 -20.71500 -19.65466 -18.92910 -17.77582 -17.18708 -16.48215 -16.16868 -15.43391 -15.29226 -15.14779 -14.72590 -14.50779 -14.33515 -14.02911 -13.93086 -13.70716 -13.58570 -13.11027 -12.99744 -12.75223 -12.73895 -12.48269 -12.29935 -12.20392 -12.06038 -11.54349 -11.26521 -11.21913 -11.06942 -11.00376 -10.85482 -10.63513 -10.48709 -10.39511 -10.24970 -10.08896 -9.87291 -9.20643 -9.19296 -9.03691 -8.92626 -8.82017 -8.49964 -8.35688 -5.99588 -4.00925 1.04232 1.13019 2.69817 3.14013 3.30892 3.37976 3.39573 3.44890 3.82976 4.20228 4.30480 4.38913 4.46149 4.53022 4.61475 4.71727 4.82443 4.88340 5.14218 5.21562 5.35836 5.39623 5.41368 5.45878 5.49440 5.55596 5.64596 5.66822 5.75242 5.76310 5.79012 5.81991 6.17775 6.20849 6.21715 6.25717 6.28438 6.34202 6.41534 6.44521 6.59379 6.63057 6.72120 6.78838 7.01378 7.06914 7.07867 7.14948 7.64749 7.77186 7.98985 8.14196 8.40760 8.74842 9.03829 9.62081 11.11796 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.001901 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.599431 B =14726.609033 C =15034.258351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.735 5.735 15 C 0.704 3.296 16 O -0.591 6.591 17 N -0.721 5.721 18 C 0.120 3.880 19 H 0.141 0.859 20 C -0.177 4.177 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.040 4.040 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.115 4.115 28 C -0.118 4.118 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.395 0.605 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 7.181 28.118 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.024 3.976 14 N -0.390 5.390 15 C 0.404 3.596 16 O -0.469 6.469 17 N -0.374 5.374 18 C 0.013 3.987 19 H 0.159 0.841 20 C -0.216 4.216 21 C -0.107 4.107 22 C -0.174 4.174 23 C -0.040 4.040 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.133 4.133 28 C -0.136 4.136 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.548 6.127 28.002 28.706 hybrid contribution -0.805 1.167 -0.949 1.706 sum -2.353 7.294 27.053 28.117 Atomic orbital electron populations 1.21752 0.95301 1.01160 1.00126 1.20917 0.95463 0.95867 0.95049 1.21755 1.00570 0.95911 1.00128 1.19090 0.96393 0.95252 0.89412 1.21179 1.31201 1.12029 0.90516 0.92275 1.25018 0.95366 0.95083 0.99093 1.69961 1.36977 1.22951 1.23432 0.86645 0.79148 0.79399 0.83076 1.20800 1.21352 1.19978 1.21510 0.98704 0.95662 0.81769 1.45363 1.56040 1.33118 1.04477 1.15939 0.80329 0.82899 0.80463 1.90910 1.42724 1.27427 1.85885 1.44451 1.56519 1.32696 1.03750 1.21589 1.00323 0.98935 0.77851 0.84127 1.23772 0.94733 1.00620 1.02455 1.20737 0.98782 0.93649 0.97508 1.21338 1.01212 0.92655 1.02199 1.18975 0.95261 0.95431 0.94314 1.20971 0.98978 0.99347 0.93949 1.21123 0.95652 0.98174 0.98815 1.21163 0.99292 0.95548 0.98452 1.21162 0.98486 0.99388 0.94242 1.21164 0.95192 0.98132 0.99131 0.95345 0.91474 0.93349 0.93346 0.91484 0.95327 0.96301 0.96284 0.93040 0.91950 0.91934 0.77153 0.77046 0.87872 0.88027 0.91629 0.92058 0.91482 0.85943 0.86132 0.86200 0.85928 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.15 2.61 4.56 -4.04 -0.02 2.59 16 14 N -0.74 -10.65 4.96 -65.23 -0.32 -10.97 16 15 C 0.70 10.75 8.57 -86.92 -0.74 10.01 16 16 O -0.59 -11.53 15.91 5.29 0.08 -11.44 16 17 N -0.72 -7.99 5.35 -58.67 -0.31 -8.30 16 18 C 0.12 1.26 5.75 -67.93 -0.39 0.87 16 19 H 0.14 1.72 5.33 -51.93 -0.28 1.44 16 20 C -0.18 -1.45 9.80 -26.73 -0.26 -1.71 16 21 C -0.10 -0.89 2.55 -155.66 -0.40 -1.28 16 22 C -0.12 -0.80 8.73 37.16 0.32 -0.48 16 23 C -0.04 -0.36 5.45 -104.62 -0.57 -0.93 16 24 C -0.11 -0.92 9.27 -39.58 -0.37 -1.29 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -1.13 9.39 -39.58 -0.37 -1.50 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 34 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.39 4.72 6.18 -40.82 -0.25 4.47 16 41 H 0.40 3.30 7.71 -40.82 -0.31 2.99 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.35 7.61 -51.93 -0.39 -0.05 16 46 H 0.07 0.40 6.14 -51.93 -0.32 0.08 16 47 H 0.12 0.78 6.44 -52.48 -0.34 0.45 16 48 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.13 1.21 5.93 -52.49 -0.31 0.90 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -31.96 401.99 -10.84 -42.79 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.11 Total: 5.92 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -3.95 Total: -14.56 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.10 Total: -44.90 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.96 -10.84 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.244 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds