Wall clock time and date at job start Tue Mar 31 2020 16:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.52994 * 109.47595 * 239.99945 * 2 1 3 5 5 C 1.50705 * 109.47173 * 59.99342 * 4 2 1 6 6 H 1.08003 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99816 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00539 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47488 * 89.99565 * 9 7 5 11 11 H 1.48502 * 109.47354 * 209.99978 * 9 7 5 12 12 H 1.48502 * 109.47236 * 329.99656 * 9 7 5 13 13 C 1.53001 * 109.47580 * 119.99401 * 2 1 3 14 14 N 1.46498 * 109.47408 * 300.00729 * 13 2 1 15 15 C 1.34770 * 120.00424 * 179.97438 * 14 13 2 16 16 O 1.21589 * 119.99824 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00089 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99533 * 179.97438 * 17 15 14 19 19 H 1.09000 * 115.56842 * 9.31766 * 18 17 15 20 20 C 1.53005 * 117.49711 * 223.62007 * 18 17 15 21 21 C 1.53000 * 60.00102 * 252.51547 * 20 18 17 22 22 C 1.52999 * 117.49956 * 107.51548 * 21 20 18 23 23 C 1.50706 * 117.50081 * 252.51372 * 21 20 18 24 24 C 1.38237 * 119.99761 * 248.61187 * 23 21 20 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 21 26 26 C 1.38234 * 120.00220 * 359.94731 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00191 * 68.58289 * 23 21 20 29 29 H 1.08995 * 109.47227 * 300.00024 * 1 2 3 30 30 H 1.08996 * 109.47645 * 60.00412 * 1 2 3 31 31 H 1.09003 * 109.46515 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47113 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46673 * 299.99430 * 3 2 1 34 34 H 1.08995 * 109.47230 * 59.99978 * 3 2 1 35 35 H 1.08996 * 109.47722 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47000 * 299.99916 * 4 2 1 37 37 H 0.97002 * 120.00614 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47180 * 180.02562 * 13 2 1 39 39 H 1.09004 * 109.46578 * 60.00351 * 13 2 1 40 40 H 0.97005 * 120.00008 * 359.97438 * 14 13 2 41 41 H 0.96995 * 120.00293 * 0.02562 * 17 15 14 42 42 H 1.09007 * 117.49755 * 145.02991 * 20 18 17 43 43 H 1.08998 * 117.51873 * 359.97438 * 20 18 17 44 44 H 1.09007 * 109.46993 * 231.25361 * 22 21 20 45 45 H 1.09002 * 109.46938 * 351.24787 * 22 21 20 46 46 H 1.08993 * 109.47482 * 111.25612 * 22 21 20 47 47 H 1.08005 * 120.00088 * 359.96779 * 24 23 21 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99990 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6258 -1.5520 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 2.2269 1.4396 -5.6615 11 1 1.0825 -0.5806 -6.3613 12 1 -0.0596 1.0369 -4.9613 13 6 2.0401 -0.7211 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4911 3.6695 16 8 2.5753 -1.4802 3.7811 17 7 1.4280 0.1445 4.7699 18 6 1.7811 -0.3566 6.1005 19 1 2.5328 -1.1457 6.1218 20 6 0.6718 -0.4090 7.1530 21 6 1.7758 0.6452 7.2570 22 6 1.4020 2.0936 6.9358 23 6 2.8102 0.4654 8.3381 24 6 2.8523 1.3411 9.4069 25 6 3.8007 1.1758 10.3989 26 6 4.7063 0.1342 10.3227 27 6 4.6673 -0.7386 9.2515 28 6 3.7164 -0.5756 8.2614 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2491 37 1 2.8602 -1.8835 -4.7335 38 1 3.1300 -0.7207 1.2495 39 1 1.6768 -1.7488 1.2493 40 1 0.9942 0.7583 2.3564 41 1 0.8706 0.9333 4.6809 42 1 0.6937 -1.2327 7.8667 43 1 -0.3207 -0.0703 6.8559 44 1 2.1071 2.4984 6.2097 45 1 0.3946 2.1254 6.5206 46 1 1.4380 2.6890 7.8480 47 1 2.1442 2.1544 9.4669 48 1 3.8339 1.8602 11.2337 49 1 5.4471 0.0049 11.0980 50 1 5.3776 -1.5498 9.1896 51 1 3.6835 -1.2598 7.4264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588367410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:30 Heat of formation + Delta-G solvation = -15.532093 kcal Electronic energy + Delta-G solvation = -27599.876453 eV Core-core repulsion = 23884.464254 eV Total energy + Delta-G solvation = -3715.412199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47949 -40.55206 -38.94190 -38.13957 -35.25209 -34.46558 -33.58332 -31.96183 -31.16245 -29.34504 -29.03555 -27.94325 -27.52073 -24.99974 -24.03287 -23.61960 -22.83581 -21.84340 -20.35371 -20.24411 -19.12871 -18.35475 -17.92937 -17.31495 -16.57730 -16.53224 -16.10847 -15.99395 -15.57544 -15.38533 -15.25945 -14.91470 -14.66034 -14.53736 -14.35931 -14.20612 -13.92335 -13.87648 -13.65201 -13.37257 -13.11217 -12.88016 -12.83433 -12.71177 -12.59058 -12.32276 -12.26254 -12.21444 -11.96461 -11.86026 -11.81956 -11.52095 -11.45400 -11.16483 -10.97131 -10.84416 -10.50310 -10.21792 -9.81672 -9.63075 -9.40699 -8.12711 -6.20555 0.41420 0.50650 1.43340 1.43889 1.54085 1.61187 2.05459 2.45150 2.70967 3.11096 3.21526 3.21636 3.60381 3.68421 3.87697 3.94164 3.98770 4.10953 4.13761 4.24275 4.25997 4.29868 4.52825 4.62592 4.70236 4.73782 4.75065 4.80353 4.87792 4.89669 4.92998 4.98185 4.98592 5.12760 5.14236 5.15730 5.21562 5.28779 5.41282 5.48944 5.52013 5.52066 5.55466 5.59784 5.61777 5.64729 5.71697 5.82250 5.91190 5.99557 6.12591 6.32103 6.94487 7.09597 7.47035 7.57324 8.99759 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.001901 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.599431 B =14726.609033 C =15034.258351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.162 3.838 14 N -0.721 5.721 15 C 0.701 3.299 16 O -0.639 6.639 17 N -0.699 5.699 18 C 0.090 3.910 19 H 0.114 0.886 20 C -0.160 4.160 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.070 0.930 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.410 0.590 41 H 0.413 0.587 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.140 0.860 50 H 0.130 0.870 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 10.417 30.112 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.037 3.963 14 N -0.378 5.378 15 C 0.401 3.599 16 O -0.521 6.521 17 N -0.353 5.353 18 C -0.017 4.017 19 H 0.132 0.868 20 C -0.199 4.199 21 C -0.091 4.091 22 C -0.175 4.175 23 C -0.055 4.055 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.158 4.158 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.248 0.752 41 H 0.250 0.750 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.160 0.840 48 H 0.163 0.837 49 H 0.158 0.842 50 H 0.148 0.852 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.692 9.430 30.039 31.700 hybrid contribution -0.092 0.116 -1.442 1.450 sum -3.784 9.546 28.597 30.385 Atomic orbital electron populations 1.21683 0.93464 1.00963 1.01658 1.20709 0.96794 0.96313 0.92602 1.21691 0.99857 0.94599 1.01679 1.18975 0.94269 0.94241 0.92347 1.21593 1.30392 1.12033 0.91002 0.90811 1.25974 0.95757 0.95894 1.02800 1.70124 1.38855 1.24945 1.24053 0.85522 0.79180 0.78058 0.78724 1.20214 1.21671 1.18258 1.21058 0.97412 0.94977 0.82843 1.44973 1.56136 1.33340 1.03307 1.16080 0.80000 0.82543 0.81249 1.90887 1.44895 1.29742 1.86576 1.44173 1.55740 1.32558 1.02831 1.21589 1.01805 1.00224 0.78060 0.86791 1.23821 0.94979 1.00540 1.00548 1.20789 0.98295 0.94457 0.95519 1.21409 1.01999 0.91218 1.02868 1.19149 0.95530 0.95685 0.95160 1.21234 0.99430 0.99426 0.93510 1.21482 0.95007 0.98245 0.99303 1.21467 0.99778 0.95259 0.98459 1.21368 0.98602 1.00145 0.94544 1.21229 0.96424 0.98746 0.99398 0.91089 0.92537 0.94496 0.94569 0.92484 0.91098 0.99641 0.99568 0.93220 0.93991 0.93873 0.75173 0.74987 0.87877 0.86172 0.92258 0.90258 0.90123 0.83969 0.83684 0.84206 0.85211 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.37 7.65 25.60 0.20 -27.17 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 8 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.16 5.88 4.56 86.38 0.39 6.27 16 14 N -0.72 -19.98 4.96 -478.54 -2.37 -22.36 16 15 C 0.70 21.19 8.57 179.06 1.53 22.73 16 16 O -0.64 -25.89 15.91 -4.00 -0.06 -25.95 16 17 N -0.70 -14.48 5.35 -457.80 -2.45 -16.93 16 18 C 0.09 1.84 5.75 44.99 0.26 2.10 16 19 H 0.11 3.00 5.33 -2.39 -0.01 2.99 16 20 C -0.16 -2.34 9.80 30.60 0.30 -2.04 16 21 C -0.09 -1.35 2.55 -52.92 -0.13 -1.49 16 22 C -0.12 -1.24 8.73 71.98 0.63 -0.61 16 23 C -0.05 -0.95 5.45 -19.86 -0.11 -1.06 16 24 C -0.12 -1.64 9.27 22.27 0.21 -1.43 16 25 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 26 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 27 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 28 C -0.14 -2.76 9.39 22.27 0.21 -2.55 16 29 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 30 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 34 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 35 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.41 8.46 6.18 -92.70 -0.57 7.88 16 41 H 0.41 5.62 7.71 -92.71 -0.71 4.90 16 42 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.12 1.33 8.05 -2.39 -0.02 1.31 16 44 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.08 0.56 7.61 -2.39 -0.02 0.54 16 46 H 0.08 0.65 6.14 -2.39 -0.01 0.64 16 47 H 0.14 1.33 6.44 -2.91 -0.02 1.31 16 48 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 49 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 50 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.11 2.42 5.93 -2.91 -0.02 2.41 16 Total: -1.00 -73.30 401.99 2.95 -70.36 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.34 Total: 23.59 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.87 Total: -17.26 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.54 Total: -96.32 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.30 2.95 -70.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.824 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds