Wall clock time and date at job start Tue Mar 31 2020 16:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.53002 * 109.46744 * 239.99825 * 2 1 3 5 5 C 1.50693 * 109.47400 * 60.00643 * 4 2 1 6 6 H 1.08004 * 120.00238 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00413 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99489 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00355 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46963 * 60.00184 * 9 7 5 11 11 H 1.48502 * 109.47212 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47284 * 300.00207 * 9 7 5 13 13 C 1.52995 * 109.46880 * 120.00081 * 2 1 3 14 14 N 1.46504 * 109.47285 * 299.99732 * 13 2 1 15 15 C 1.34770 * 120.00369 * 180.02562 * 14 13 2 16 16 O 1.21590 * 120.00080 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00444 * 179.97438 * 15 14 13 18 18 C 1.46492 * 120.00440 * 180.02562 * 17 15 14 19 19 H 1.09008 * 115.54750 * 351.48661 * 18 17 15 20 20 C 1.52995 * 117.50249 * 137.19365 * 18 17 15 21 21 C 1.52995 * 117.50052 * 205.81789 * 18 17 15 22 22 C 1.53006 * 117.50021 * 144.99494 * 21 18 17 23 23 C 1.50696 * 117.50032 * 359.97438 * 21 18 17 24 24 C 1.38233 * 119.99956 * 244.93262 * 23 21 18 25 25 C 1.38239 * 119.99823 * 179.97438 * 24 23 21 26 26 C 1.38231 * 120.00282 * 0.08697 * 25 24 23 27 27 C 1.38238 * 119.99738 * 0.02562 * 26 25 24 28 28 C 1.38230 * 119.99923 * 359.95516 * 27 26 25 29 29 H 1.09005 * 109.47065 * 300.00191 * 1 2 3 30 30 H 1.09005 * 109.47092 * 59.99654 * 1 2 3 31 31 H 1.08990 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47048 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47421 * 299.99620 * 3 2 1 34 34 H 1.08997 * 109.47515 * 60.00100 * 3 2 1 35 35 H 1.09007 * 109.46748 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47364 * 299.99836 * 4 2 1 37 37 H 0.97005 * 119.99647 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47270 * 180.02562 * 13 2 1 39 39 H 1.09004 * 109.47433 * 59.99511 * 13 2 1 40 40 H 0.97001 * 119.99913 * 0.02562 * 14 13 2 41 41 H 0.96997 * 119.99646 * 0.02562 * 17 15 14 42 42 H 1.09005 * 117.49993 * 0.02562 * 20 18 17 43 43 H 1.09002 * 117.50380 * 214.98461 * 20 18 17 44 44 H 1.09000 * 109.47092 * 299.91481 * 22 21 18 45 45 H 1.09008 * 109.46671 * 59.91612 * 22 21 18 46 46 H 1.09001 * 109.46968 * 179.91061 * 22 21 18 47 47 H 1.08001 * 120.00220 * 0.05989 * 24 23 21 48 48 H 1.07997 * 119.99759 * 180.36949 * 25 24 23 49 49 H 1.08001 * 120.00194 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99777 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8671 -2.3807 7 6 1.8712 -0.4817 -3.7320 8 7 2.6280 -1.5505 -3.8526 9 14 1.2481 0.3985 -5.2572 10 1 1.7422 1.7989 -5.2571 11 1 1.7441 -0.3008 -6.4697 12 1 -0.2369 0.3976 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.5766 -1.4794 3.7811 17 7 1.4288 0.1449 4.7700 18 6 1.7835 -0.3549 6.1005 19 1 2.2885 -1.3207 6.1207 20 6 2.1854 0.6750 7.1582 21 6 0.8316 -0.0313 7.2537 22 6 0.6612 -1.0881 8.3470 23 6 -0.3990 0.7777 6.9341 24 6 -0.5540 2.0417 7.4717 25 6 -1.6826 2.7840 7.1780 26 6 -2.6569 2.2617 6.3482 27 6 -2.5030 0.9967 5.8125 28 6 -1.3742 0.2546 6.1058 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 2.8629 -1.8815 -4.7336 38 1 3.1300 -0.7209 1.2495 39 1 1.6765 -1.7489 1.2493 40 1 0.9937 0.7579 2.3564 41 1 0.8709 0.9334 4.6810 42 1 2.1854 1.7247 6.8641 43 1 2.9550 0.3871 7.8743 44 1 0.2760 -2.0077 7.9065 45 1 1.6258 -1.2855 8.8149 46 1 -0.0393 -0.7238 9.0984 47 1 0.2072 2.4499 8.1201 48 1 -1.8009 3.7740 7.5933 49 1 -3.5389 2.8415 6.1192 50 1 -3.2644 0.5883 5.1645 51 1 -1.2537 -0.7336 5.6869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588367411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:33 Heat of formation + Delta-G solvation = -0.360168 kcal Electronic energy + Delta-G solvation = -28186.196217 eV Core-core repulsion = 24471.441922 eV Total energy + Delta-G solvation = -3714.754295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54068 -39.47326 -37.78596 -36.91149 -33.67445 -33.12351 -31.94371 -31.17542 -30.71655 -28.50529 -27.07996 -26.49521 -26.02547 -23.44140 -23.31730 -22.77614 -21.80741 -20.64397 -19.79799 -18.78287 -17.68121 -17.20551 -16.38768 -16.19078 -15.27946 -15.21058 -15.10048 -14.70720 -14.64340 -14.39143 -13.82314 -13.74487 -13.66264 -13.55844 -13.15776 -13.01890 -12.98063 -12.72479 -12.48138 -12.23014 -12.09233 -12.04589 -11.50361 -11.41295 -11.16830 -11.04534 -10.98215 -10.86522 -10.61550 -10.38133 -10.26741 -10.20439 -10.03946 -9.85690 -9.21151 -9.18976 -9.13597 -8.92433 -8.84759 -8.44227 -8.34546 -5.98771 -4.00067 1.04959 1.12447 2.75741 3.17632 3.32484 3.37957 3.39130 3.49392 3.66803 4.25969 4.30710 4.46138 4.53047 4.59830 4.71525 4.75539 4.86285 4.89256 5.20689 5.29404 5.36621 5.41046 5.48849 5.50610 5.51116 5.53051 5.66186 5.71412 5.76535 5.77147 5.77860 5.88918 6.19697 6.21122 6.23757 6.25906 6.30002 6.34282 6.43185 6.50707 6.61421 6.64429 6.71475 6.81407 7.05921 7.08528 7.09031 7.16931 7.65564 7.78227 7.99937 8.18185 8.41796 8.78918 9.04525 9.62848 11.12682 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002432 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.164242 B =11509.010474 C =12524.096348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.704 3.296 16 O -0.593 6.593 17 N -0.719 5.719 18 C 0.126 3.874 19 H 0.141 0.859 20 C -0.183 4.183 21 C -0.106 4.106 22 C -0.108 4.108 23 C -0.049 4.049 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.104 4.104 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.395 0.605 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 7.587 25.734 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.024 3.976 14 N -0.390 5.390 15 C 0.404 3.596 16 O -0.471 6.471 17 N -0.373 5.373 18 C 0.018 3.982 19 H 0.159 0.841 20 C -0.221 4.221 21 C -0.108 4.108 22 C -0.165 4.165 23 C -0.049 4.049 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.122 4.122 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.194 6.526 25.623 27.402 hybrid contribution -0.887 1.291 -1.003 1.860 sum -8.080 7.817 24.619 27.065 Atomic orbital electron populations 1.21748 0.95318 1.01124 1.00108 1.20910 0.95445 0.95849 0.95048 1.21751 1.00543 0.95925 1.00106 1.19081 0.96382 0.95226 0.89402 1.21143 1.31206 1.12076 0.90536 0.92340 1.25011 0.95331 0.95087 0.99056 1.69960 1.36857 1.23036 1.23533 0.86713 0.79128 0.79762 0.82700 1.20350 1.21399 1.20344 1.21500 0.98677 0.95625 0.81807 1.45367 1.56006 1.33157 1.04505 1.15945 0.80325 0.82883 0.80479 1.90908 1.42742 1.27524 1.85916 1.44485 1.56275 1.32745 1.03749 1.21519 0.99928 0.98854 0.77900 0.84132 1.23752 0.96589 0.99025 1.02778 1.20779 0.89360 1.00383 1.00275 1.21296 1.02221 0.96820 0.96202 1.18991 0.94474 0.93975 0.97488 1.21021 0.97916 0.94111 0.99928 1.21138 0.94281 0.99832 0.98702 1.21186 0.99184 0.95911 0.97705 1.21198 0.97801 0.94767 0.99894 1.21051 0.93450 1.00130 0.97620 0.95342 0.91519 0.93373 0.93366 0.91500 0.95364 0.96311 0.96313 0.92987 0.91983 0.91979 0.77186 0.77043 0.88443 0.87682 0.91799 0.91780 0.91962 0.86095 0.86144 0.86162 0.85943 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.64 16 14 N -0.74 -10.98 4.96 -65.22 -0.32 -11.30 16 15 C 0.70 10.97 8.57 -86.92 -0.74 10.22 16 16 O -0.59 -11.64 15.91 5.29 0.08 -11.56 16 17 N -0.72 -8.38 5.04 -58.68 -0.30 -8.68 16 18 C 0.13 1.30 6.10 -67.94 -0.41 0.89 16 19 H 0.14 1.67 7.39 -51.92 -0.38 1.29 16 20 C -0.18 -1.46 9.43 -26.74 -0.25 -1.71 16 21 C -0.11 -0.87 2.19 -155.66 -0.34 -1.21 16 22 C -0.11 -0.77 9.84 37.16 0.37 -0.40 16 23 C -0.05 -0.42 4.07 -104.63 -0.43 -0.84 16 24 C -0.11 -0.87 9.33 -39.58 -0.37 -1.24 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 28 C -0.10 -0.94 8.99 -39.59 -0.36 -1.30 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.27 6.62 -51.92 -0.34 0.92 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.39 5.02 6.18 -40.82 -0.25 4.77 16 41 H 0.40 3.99 7.64 -40.82 -0.31 3.68 16 42 H 0.10 0.77 8.01 -51.93 -0.42 0.35 16 43 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.39 7.90 -51.92 -0.41 -0.02 16 46 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 47 H 0.12 0.80 7.94 -52.49 -0.42 0.38 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 408.43 15.07 6.15 6.15 Total: -1.00 -31.34 408.43 -10.88 -42.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.51 Total: 6.56 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.71 Total: -13.86 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.12 Total: -45.72 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.34 -10.88 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.869 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds