Wall clock time and date at job start Tue Mar 31 2020 16:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.53002 * 109.46744 * 239.99825 * 2 1 3 5 5 C 1.50693 * 109.47400 * 60.00643 * 4 2 1 6 6 H 1.08004 * 120.00238 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00413 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99489 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00355 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46963 * 60.00184 * 9 7 5 11 11 H 1.48502 * 109.47212 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47284 * 300.00207 * 9 7 5 13 13 C 1.52995 * 109.46880 * 120.00081 * 2 1 3 14 14 N 1.46504 * 109.47285 * 299.99732 * 13 2 1 15 15 C 1.34770 * 120.00369 * 180.02562 * 14 13 2 16 16 O 1.21590 * 120.00080 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00444 * 179.97438 * 15 14 13 18 18 C 1.46492 * 120.00440 * 180.02562 * 17 15 14 19 19 H 1.09008 * 115.54750 * 351.48661 * 18 17 15 20 20 C 1.52995 * 117.50249 * 137.19365 * 18 17 15 21 21 C 1.52995 * 117.50052 * 205.81789 * 18 17 15 22 22 C 1.53006 * 117.50021 * 144.99494 * 21 18 17 23 23 C 1.50696 * 117.50032 * 359.97438 * 21 18 17 24 24 C 1.38233 * 119.99956 * 244.93262 * 23 21 18 25 25 C 1.38239 * 119.99823 * 179.97438 * 24 23 21 26 26 C 1.38231 * 120.00282 * 0.08697 * 25 24 23 27 27 C 1.38238 * 119.99738 * 0.02562 * 26 25 24 28 28 C 1.38230 * 119.99923 * 359.95516 * 27 26 25 29 29 H 1.09005 * 109.47065 * 300.00191 * 1 2 3 30 30 H 1.09005 * 109.47092 * 59.99654 * 1 2 3 31 31 H 1.08990 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47048 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47421 * 299.99620 * 3 2 1 34 34 H 1.08997 * 109.47515 * 60.00100 * 3 2 1 35 35 H 1.09007 * 109.46748 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47364 * 299.99836 * 4 2 1 37 37 H 0.97005 * 119.99647 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47270 * 180.02562 * 13 2 1 39 39 H 1.09004 * 109.47433 * 59.99511 * 13 2 1 40 40 H 0.97001 * 119.99913 * 0.02562 * 14 13 2 41 41 H 0.96997 * 119.99646 * 0.02562 * 17 15 14 42 42 H 1.09005 * 117.49993 * 0.02562 * 20 18 17 43 43 H 1.09002 * 117.50380 * 214.98461 * 20 18 17 44 44 H 1.09000 * 109.47092 * 299.91481 * 22 21 18 45 45 H 1.09008 * 109.46671 * 59.91612 * 22 21 18 46 46 H 1.09001 * 109.46968 * 179.91061 * 22 21 18 47 47 H 1.08001 * 120.00220 * 0.05989 * 24 23 21 48 48 H 1.07997 * 119.99759 * 180.36949 * 25 24 23 49 49 H 1.08001 * 120.00194 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99777 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8671 -2.3807 7 6 1.8712 -0.4817 -3.7320 8 7 2.6280 -1.5505 -3.8526 9 14 1.2481 0.3985 -5.2572 10 1 1.7422 1.7989 -5.2571 11 1 1.7441 -0.3008 -6.4697 12 1 -0.2369 0.3976 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.5766 -1.4794 3.7811 17 7 1.4288 0.1449 4.7700 18 6 1.7835 -0.3549 6.1005 19 1 2.2885 -1.3207 6.1207 20 6 2.1854 0.6750 7.1582 21 6 0.8316 -0.0313 7.2537 22 6 0.6612 -1.0881 8.3470 23 6 -0.3990 0.7777 6.9341 24 6 -0.5540 2.0417 7.4717 25 6 -1.6826 2.7840 7.1780 26 6 -2.6569 2.2617 6.3482 27 6 -2.5030 0.9967 5.8125 28 6 -1.3742 0.2546 6.1058 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 2.8629 -1.8815 -4.7336 38 1 3.1300 -0.7209 1.2495 39 1 1.6765 -1.7489 1.2493 40 1 0.9937 0.7579 2.3564 41 1 0.8709 0.9334 4.6810 42 1 2.1854 1.7247 6.8641 43 1 2.9550 0.3871 7.8743 44 1 0.2760 -2.0077 7.9065 45 1 1.6258 -1.2855 8.8149 46 1 -0.0393 -0.7238 9.0984 47 1 0.2072 2.4499 8.1201 48 1 -1.8009 3.7740 7.5933 49 1 -3.5389 2.8415 6.1192 50 1 -3.2644 0.5883 5.1645 51 1 -1.2537 -0.7336 5.6869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588367411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:33 Heat of formation + Delta-G solvation = -17.227239 kcal Electronic energy + Delta-G solvation = -28186.927628 eV Core-core repulsion = 24471.441922 eV Total energy + Delta-G solvation = -3715.485706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46803 -40.47314 -38.88619 -38.09619 -35.24363 -34.47505 -33.57427 -31.75702 -31.36019 -29.28904 -28.93604 -27.95923 -27.46506 -24.97892 -24.02166 -23.69488 -22.69736 -21.83352 -20.48561 -20.16580 -19.01722 -18.36490 -18.01134 -17.10388 -16.58533 -16.52770 -16.07210 -15.77091 -15.76207 -15.32829 -15.23927 -14.93229 -14.67387 -14.34540 -14.26100 -14.18999 -13.93650 -13.92688 -13.70216 -13.61802 -13.03506 -12.85101 -12.75008 -12.73593 -12.60352 -12.32516 -12.27006 -12.21749 -11.99973 -11.98502 -11.73373 -11.52784 -11.44067 -11.00804 -10.89799 -10.83253 -10.49529 -10.21536 -9.80108 -9.73935 -9.38509 -8.12772 -6.20640 0.45247 0.53067 1.43031 1.45228 1.52350 1.63949 2.06052 2.45173 2.83325 2.90264 3.21571 3.23148 3.61696 3.77624 3.88992 3.97893 4.10097 4.14492 4.20664 4.23117 4.23938 4.33999 4.61139 4.67032 4.70096 4.72708 4.74126 4.80945 4.88664 4.92797 4.94633 4.97000 5.00699 5.11828 5.12730 5.18743 5.20272 5.32217 5.40150 5.48521 5.50754 5.53934 5.54471 5.59651 5.65588 5.67945 5.73581 5.81324 5.90823 5.98227 6.14254 6.32016 6.94050 7.07056 7.46959 7.57351 8.99661 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002432 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.164242 B =11509.010474 C =12524.096348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.266 1.266 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.702 3.298 16 O -0.637 6.637 17 N -0.700 5.700 18 C 0.094 3.906 19 H 0.120 0.880 20 C -0.163 4.163 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.058 4.058 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.067 0.933 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.408 0.592 41 H 0.406 0.594 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.135 0.865 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.129 0.871 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 10.696 27.475 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.191 1.191 13 C 0.038 3.962 14 N -0.379 5.379 15 C 0.402 3.598 16 O -0.519 6.519 17 N -0.353 5.353 18 C -0.013 4.013 19 H 0.138 0.862 20 C -0.201 4.201 21 C -0.092 4.092 22 C -0.166 4.166 23 C -0.058 4.058 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.123 0.877 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.153 0.847 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.147 0.853 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.906 9.693 27.410 30.407 hybrid contribution -0.383 0.303 -1.441 1.522 sum -9.289 9.996 25.969 29.336 Atomic orbital electron populations 1.21674 0.93600 1.00912 1.01502 1.20700 0.96679 0.96277 0.92689 1.21679 0.99904 0.94639 1.01517 1.18961 0.94309 0.94208 0.92245 1.21557 1.30456 1.12116 0.91046 0.90913 1.25950 0.95672 0.95864 1.02717 1.70123 1.38722 1.25011 1.24140 0.85599 0.78964 0.78756 0.78324 1.19138 1.21732 1.19126 1.21062 0.97468 0.94924 0.82787 1.45010 1.56103 1.33335 1.03491 1.16060 0.80006 0.82522 0.81170 1.90883 1.44829 1.29637 1.86553 1.44260 1.55426 1.32388 1.03215 1.21600 1.02578 0.99284 0.77855 0.86202 1.23823 0.96693 0.98627 1.00973 1.20779 0.89484 1.00247 0.98712 1.21331 1.03063 0.96206 0.95999 1.19041 0.94380 0.94501 0.97856 1.21208 0.98502 0.93648 0.99877 1.21433 0.93827 1.00650 0.98198 1.21447 0.99903 0.95688 0.97401 1.21355 0.97763 0.95246 1.00257 1.21030 0.94293 0.99874 0.98463 0.91426 0.92513 0.94471 0.94446 0.92496 0.91417 0.99548 0.99555 0.93180 0.93840 0.93866 0.75479 0.75754 0.87658 0.86131 0.92556 0.90626 0.91250 0.84675 0.84106 0.84496 0.85320 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -27.59 7.65 25.60 0.20 -27.39 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.16 5.99 4.56 86.38 0.39 6.38 16 14 N -0.72 -20.93 4.96 -478.53 -2.37 -23.31 16 15 C 0.70 21.77 8.57 179.06 1.53 23.30 16 16 O -0.64 -25.79 15.91 -4.00 -0.06 -25.85 16 17 N -0.70 -15.60 5.04 -457.83 -2.31 -17.91 16 18 C 0.09 1.88 6.10 44.99 0.27 2.15 16 19 H 0.12 2.94 7.39 -2.38 -0.02 2.92 16 20 C -0.16 -2.22 9.43 30.59 0.29 -1.93 16 21 C -0.09 -1.34 2.19 -52.93 -0.12 -1.46 16 22 C -0.11 -1.39 9.84 71.98 0.71 -0.68 16 23 C -0.06 -0.87 4.07 -19.87 -0.08 -0.95 16 24 C -0.11 -1.45 9.33 22.27 0.21 -1.25 16 25 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 26 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 27 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 28 C -0.12 -2.00 8.99 22.27 0.20 -1.80 16 29 H 0.07 1.75 6.86 -2.38 -0.02 1.73 16 30 H 0.06 2.04 6.62 -2.38 -0.02 2.03 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 2.05 6.62 -2.38 -0.02 2.03 16 34 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 35 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.41 9.31 6.18 -92.71 -0.57 8.74 16 41 H 0.41 7.37 7.64 -92.71 -0.71 6.66 16 42 H 0.11 1.32 8.01 -2.38 -0.02 1.30 16 43 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.79 7.90 -2.38 -0.02 0.77 16 46 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 47 H 0.14 1.30 7.94 -2.91 -0.02 1.28 16 48 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 50 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 51 H 0.11 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -70.66 408.43 3.20 -67.47 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.36 Total: 26.03 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.99 Total: -14.96 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.40 Total: -98.35 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.06 Total: -25.85 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.66 3.20 -67.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.240 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds