Wall clock time and date at job start Tue Mar 31 2020 16:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47503 * 2 1 4 4 C 1.53002 * 109.47038 * 240.00029 * 2 1 3 5 5 C 1.50701 * 109.47275 * 59.99881 * 4 2 1 6 6 H 1.08003 * 119.99691 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00287 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00319 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47369 * 89.99524 * 9 7 5 11 11 H 1.48500 * 109.46915 * 210.00001 * 9 7 5 12 12 H 1.48499 * 109.46903 * 329.99708 * 9 7 5 13 13 C 1.53001 * 109.47429 * 120.00089 * 2 1 3 14 14 N 1.46492 * 109.46935 * 299.99689 * 13 2 1 15 15 C 1.34778 * 119.99957 * 179.97438 * 14 13 2 16 16 O 1.21595 * 120.00167 * 5.01671 * 15 14 13 17 17 N 1.34782 * 120.00218 * 185.01875 * 15 14 13 18 18 C 1.46534 * 124.97667 * 354.94079 * 17 15 14 19 19 C 1.53741 * 105.19459 * 179.97438 * 18 17 15 20 20 C 1.52999 * 110.41782 * 241.22446 * 19 18 17 21 21 C 1.53000 * 110.51382 * 118.82765 * 19 18 17 22 22 C 1.51220 * 104.58769 * 0.02562 * 19 18 17 23 23 C 1.38188 * 130.97156 * 179.97438 * 22 19 18 24 24 C 1.38224 * 120.15219 * 179.97438 * 23 22 19 25 25 C 1.38298 * 119.82267 * 0.02562 * 24 23 22 26 26 C 1.37841 * 120.22368 * 0.02562 * 25 24 23 27 27 C 1.38556 * 108.56078 * 359.97438 * 22 19 18 28 28 H 1.09005 * 109.46596 * 299.99963 * 1 2 3 29 29 H 1.08998 * 109.47168 * 59.99783 * 1 2 3 30 30 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46617 * 300.00518 * 3 2 1 33 33 H 1.08995 * 109.46814 * 60.00003 * 3 2 1 34 34 H 1.08997 * 109.47652 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46968 * 300.00466 * 4 2 1 36 36 H 0.96995 * 119.99902 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47203 * 179.97438 * 13 2 1 38 38 H 1.08999 * 109.47264 * 59.99958 * 13 2 1 39 39 H 0.96995 * 120.00566 * 0.02562 * 14 13 2 40 40 H 1.08996 * 110.29691 * 61.03784 * 18 17 15 41 41 H 1.08996 * 110.30117 * 298.89425 * 18 17 15 42 42 H 1.08993 * 109.47549 * 176.61679 * 20 19 18 43 43 H 1.09000 * 109.47063 * 296.62213 * 20 19 18 44 44 H 1.09002 * 109.46892 * 56.61533 * 20 19 18 45 45 H 1.08999 * 109.47398 * 303.32412 * 21 19 18 46 46 H 1.09004 * 109.47121 * 63.32457 * 21 19 18 47 47 H 1.09003 * 109.47455 * 183.32783 * 21 19 18 48 48 H 1.08000 * 119.92473 * 0.02562 * 23 22 19 49 49 H 1.07989 * 120.08671 * 180.02562 * 24 23 22 50 50 H 1.08004 * 119.88471 * 179.71609 * 25 24 23 51 51 H 1.08000 * 119.85492 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5515 -3.8528 9 14 1.2481 0.3989 -5.2572 10 1 2.2268 1.4398 -5.6615 11 1 1.0822 -0.5802 -6.3614 12 1 -0.0596 1.0373 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5519 -0.0306 2.4453 15 6 1.8771 -0.4914 3.6694 16 8 2.6488 -1.4242 3.7827 17 7 1.3469 0.0817 4.7681 18 6 0.4928 1.2724 4.7652 19 6 0.1500 1.5260 6.2423 20 6 -1.3612 1.4344 6.4630 21 6 0.6710 2.8943 6.6864 22 6 0.8610 0.4225 6.9931 23 6 0.9193 0.1376 8.3441 24 6 1.6486 -0.9470 8.7940 25 6 2.3210 -1.7471 7.8883 26 6 2.2664 -1.4661 6.5400 27 6 1.5311 -0.3730 6.0778 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2496 35 1 1.6766 -1.7489 -1.2493 36 1 2.8600 -1.8832 -4.7338 37 1 3.1301 -0.7216 1.2489 38 1 1.6768 -1.7489 1.2492 39 1 0.9939 0.7578 2.3564 40 1 -0.4157 1.0847 4.1930 41 1 1.0324 2.1239 4.3509 42 1 -1.5817 1.5567 7.5233 43 1 -1.8595 2.2202 5.8952 44 1 -1.7190 0.4610 6.1274 45 1 1.7450 2.9495 6.5083 46 1 0.1678 3.6766 6.1181 47 1 0.4716 3.0317 7.7492 48 1 0.3932 0.7633 9.0499 49 1 1.6931 -1.1690 9.8499 50 1 2.8949 -2.5922 8.2392 51 1 2.7942 -2.0946 5.8380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588754683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:06 Heat of formation + Delta-G solvation = -16.799161 kcal Electronic energy + Delta-G solvation = -28815.537920 eV Core-core repulsion = 25100.070777 eV Total energy + Delta-G solvation = -3715.467143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55369 -39.31332 -37.24224 -36.93960 -34.37789 -33.69869 -32.13258 -30.28305 -29.82375 -27.68606 -27.26625 -26.90863 -26.55913 -25.93004 -23.42535 -22.92918 -22.18483 -20.30950 -19.79158 -18.78549 -17.56769 -16.79097 -16.32125 -16.26467 -15.90961 -15.25467 -14.90914 -14.72423 -14.52024 -14.25777 -14.03368 -13.72231 -13.70275 -13.41517 -13.16998 -13.03355 -12.79110 -12.69099 -12.32816 -12.25298 -12.14669 -12.08960 -11.96896 -11.53482 -11.28942 -11.20753 -11.04690 -10.88129 -10.81470 -10.67429 -10.44612 -10.35486 -10.28473 -10.05482 -9.91989 -9.24857 -8.96217 -8.94206 -8.86016 -8.38029 -7.83251 -6.01961 -4.03497 1.21734 1.31040 2.42187 3.13729 3.29325 3.36504 3.37918 3.71393 3.82954 4.03668 4.23871 4.43413 4.57786 4.73046 4.87360 4.95934 5.04893 5.20747 5.23360 5.28310 5.28574 5.33514 5.37771 5.49432 5.49906 5.54570 5.58397 5.58794 5.69593 5.74785 5.90062 5.92173 6.03599 6.11843 6.17878 6.24791 6.34076 6.35000 6.36592 6.45626 6.52791 6.58614 6.71532 6.88183 7.01355 7.03293 7.07000 7.08585 7.61383 7.73351 7.87795 7.96468 8.37583 8.53228 9.01135 9.59750 11.09494 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.002501 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.041152 B =11193.293775 C =12023.867370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.144 3.856 14 N -0.727 5.727 15 C 0.711 3.289 16 O -0.570 6.570 17 N -0.570 5.570 18 C 0.103 3.897 19 C -0.026 4.026 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.074 4.074 24 C -0.152 4.152 25 C -0.091 4.091 26 C -0.136 4.136 27 C 0.178 3.822 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.125 0.875 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 7.609 24.972 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.021 3.979 14 N -0.382 5.382 15 C 0.413 3.587 16 O -0.447 6.447 17 N -0.296 5.296 18 C -0.020 4.020 19 C -0.026 4.026 20 C -0.192 4.192 21 C -0.192 4.192 22 C -0.140 4.140 23 C -0.093 4.093 24 C -0.171 4.171 25 C -0.110 4.110 26 C -0.157 4.157 27 C 0.081 3.919 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.143 0.857 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.808 6.779 24.653 26.219 hybrid contribution -0.514 0.760 -1.094 1.428 sum -6.322 7.539 23.559 25.531 Atomic orbital electron populations 1.21760 0.95252 1.01209 1.00148 1.20924 0.95495 0.95904 0.94915 1.21757 1.00634 0.95846 1.00140 1.19092 0.96435 0.95253 0.89344 1.21163 1.31247 1.12076 0.90479 0.92262 1.25013 0.95321 0.95062 0.99093 1.69963 1.36924 1.22970 1.23475 0.86646 0.79163 0.79419 0.83064 1.20765 1.21325 1.19958 1.21600 0.99024 0.95666 0.81598 1.45424 1.55605 1.32992 1.04199 1.15694 0.80800 0.82283 0.79947 1.90900 1.37944 1.30700 1.85153 1.45046 1.50820 1.29586 1.04138 1.22330 0.94688 0.87377 0.97576 1.20019 0.96146 0.94503 0.91945 1.21857 0.92616 1.02345 1.02420 1.21855 1.01364 0.94197 1.01807 1.19859 1.02542 0.98243 0.93330 1.20252 0.98742 0.97249 0.93028 1.20952 1.00187 0.96501 0.99507 1.20926 0.98597 0.99213 0.92262 1.21014 1.01067 0.97394 0.96264 1.18161 0.96266 0.94767 0.82702 0.95467 0.91320 0.93295 0.93267 0.91337 0.95453 0.96246 0.96257 0.93007 0.91606 0.91765 0.76876 0.89925 0.89965 0.91819 0.91799 0.92170 0.92195 0.91810 0.91809 0.86166 0.85935 0.85689 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 C 0.14 2.56 4.57 -4.05 -0.02 2.54 16 14 N -0.73 -10.98 4.91 -65.23 -0.32 -11.30 16 15 C 0.71 11.67 8.42 -86.91 -0.73 10.93 16 16 O -0.57 -11.32 14.54 5.28 0.08 -11.25 16 17 N -0.57 -7.70 3.13 -118.25 -0.37 -8.07 16 18 C 0.10 0.99 5.65 -3.64 -0.02 0.97 16 19 C -0.03 -0.21 1.03 -155.02 -0.16 -0.37 16 20 C -0.14 -0.92 8.38 37.16 0.31 -0.61 16 21 C -0.13 -0.91 8.39 37.16 0.31 -0.60 16 22 C -0.14 -1.44 4.87 -104.27 -0.51 -1.94 16 23 C -0.07 -0.68 10.04 -39.60 -0.40 -1.07 16 24 C -0.15 -1.39 10.06 -39.56 -0.40 -1.79 16 25 C -0.09 -0.97 10.02 -39.70 -0.40 -1.37 16 26 C -0.14 -1.86 9.46 -39.21 -0.37 -2.23 16 27 C 0.18 2.38 6.62 -83.56 -0.55 1.83 16 28 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 5.05 5.10 -40.82 -0.21 4.84 16 40 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 41 H 0.08 0.70 7.71 -51.93 -0.40 0.30 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 51 H 0.14 2.20 6.29 -52.49 -0.33 1.87 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -31.45 397.61 -10.31 -41.76 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.51 Total: 2.74 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.89 Total: -10.35 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.05 Total: -44.90 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.45 -10.31 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588754683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds