Wall clock time and date at job start Tue Mar 31 2020 16:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47503 * 2 1 4 4 C 1.53002 * 109.47038 * 240.00029 * 2 1 3 5 5 C 1.50701 * 109.47275 * 59.99881 * 4 2 1 6 6 H 1.08003 * 119.99691 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00287 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00319 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47369 * 89.99524 * 9 7 5 11 11 H 1.48500 * 109.46915 * 210.00001 * 9 7 5 12 12 H 1.48499 * 109.46903 * 329.99708 * 9 7 5 13 13 C 1.53001 * 109.47429 * 120.00089 * 2 1 3 14 14 N 1.46492 * 109.46935 * 299.99689 * 13 2 1 15 15 C 1.34778 * 119.99957 * 179.97438 * 14 13 2 16 16 O 1.21595 * 120.00167 * 5.01671 * 15 14 13 17 17 N 1.34782 * 120.00218 * 185.01875 * 15 14 13 18 18 C 1.46534 * 124.97667 * 354.94079 * 17 15 14 19 19 C 1.53741 * 105.19459 * 179.97438 * 18 17 15 20 20 C 1.52999 * 110.41782 * 241.22446 * 19 18 17 21 21 C 1.53000 * 110.51382 * 118.82765 * 19 18 17 22 22 C 1.51220 * 104.58769 * 0.02562 * 19 18 17 23 23 C 1.38188 * 130.97156 * 179.97438 * 22 19 18 24 24 C 1.38224 * 120.15219 * 179.97438 * 23 22 19 25 25 C 1.38298 * 119.82267 * 0.02562 * 24 23 22 26 26 C 1.37841 * 120.22368 * 0.02562 * 25 24 23 27 27 C 1.38556 * 108.56078 * 359.97438 * 22 19 18 28 28 H 1.09005 * 109.46596 * 299.99963 * 1 2 3 29 29 H 1.08998 * 109.47168 * 59.99783 * 1 2 3 30 30 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46617 * 300.00518 * 3 2 1 33 33 H 1.08995 * 109.46814 * 60.00003 * 3 2 1 34 34 H 1.08997 * 109.47652 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46968 * 300.00466 * 4 2 1 36 36 H 0.96995 * 119.99902 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47203 * 179.97438 * 13 2 1 38 38 H 1.08999 * 109.47264 * 59.99958 * 13 2 1 39 39 H 0.96995 * 120.00566 * 0.02562 * 14 13 2 40 40 H 1.08996 * 110.29691 * 61.03784 * 18 17 15 41 41 H 1.08996 * 110.30117 * 298.89425 * 18 17 15 42 42 H 1.08993 * 109.47549 * 176.61679 * 20 19 18 43 43 H 1.09000 * 109.47063 * 296.62213 * 20 19 18 44 44 H 1.09002 * 109.46892 * 56.61533 * 20 19 18 45 45 H 1.08999 * 109.47398 * 303.32412 * 21 19 18 46 46 H 1.09004 * 109.47121 * 63.32457 * 21 19 18 47 47 H 1.09003 * 109.47455 * 183.32783 * 21 19 18 48 48 H 1.08000 * 119.92473 * 0.02562 * 23 22 19 49 49 H 1.07989 * 120.08671 * 180.02562 * 24 23 22 50 50 H 1.08004 * 119.88471 * 179.71609 * 25 24 23 51 51 H 1.08000 * 119.85492 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5515 -3.8528 9 14 1.2481 0.3989 -5.2572 10 1 2.2268 1.4398 -5.6615 11 1 1.0822 -0.5802 -6.3614 12 1 -0.0596 1.0373 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5519 -0.0306 2.4453 15 6 1.8771 -0.4914 3.6694 16 8 2.6488 -1.4242 3.7827 17 7 1.3469 0.0817 4.7681 18 6 0.4928 1.2724 4.7652 19 6 0.1500 1.5260 6.2423 20 6 -1.3612 1.4344 6.4630 21 6 0.6710 2.8943 6.6864 22 6 0.8610 0.4225 6.9931 23 6 0.9193 0.1376 8.3441 24 6 1.6486 -0.9470 8.7940 25 6 2.3210 -1.7471 7.8883 26 6 2.2664 -1.4661 6.5400 27 6 1.5311 -0.3730 6.0778 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2496 35 1 1.6766 -1.7489 -1.2493 36 1 2.8600 -1.8832 -4.7338 37 1 3.1301 -0.7216 1.2489 38 1 1.6768 -1.7489 1.2492 39 1 0.9939 0.7578 2.3564 40 1 -0.4157 1.0847 4.1930 41 1 1.0324 2.1239 4.3509 42 1 -1.5817 1.5567 7.5233 43 1 -1.8595 2.2202 5.8952 44 1 -1.7190 0.4610 6.1274 45 1 1.7450 2.9495 6.5083 46 1 0.1678 3.6766 6.1181 47 1 0.4716 3.0317 7.7492 48 1 0.3932 0.7633 9.0499 49 1 1.6931 -1.1690 9.8499 50 1 2.8949 -2.5922 8.2392 51 1 2.7942 -2.0946 5.8380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588754683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:05 Heat of formation + Delta-G solvation = -33.330577 kcal Electronic energy + Delta-G solvation = -28816.254776 eV Core-core repulsion = 25100.070777 eV Total energy + Delta-G solvation = -3716.183999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49137 -40.50343 -38.73145 -37.77269 -35.37281 -35.24597 -33.96182 -31.07662 -30.75249 -29.09254 -28.16421 -28.01256 -27.99236 -27.16593 -25.01124 -23.93676 -23.28239 -21.47005 -20.54705 -20.12626 -18.92026 -18.37091 -17.79890 -17.31661 -16.67374 -16.58302 -16.18752 -15.96882 -15.86236 -15.33819 -15.04896 -14.86671 -14.70204 -14.57874 -14.36704 -14.01887 -13.95115 -13.93236 -13.82667 -13.29238 -13.04526 -12.88760 -12.77493 -12.74441 -12.69964 -12.61696 -12.36010 -12.24666 -12.11125 -11.99975 -11.91543 -11.59549 -11.57524 -11.29828 -11.23751 -11.01214 -10.88239 -10.51776 -10.25931 -9.73834 -8.75440 -8.14207 -6.22204 0.37446 0.45362 1.31544 1.42976 1.43225 1.53584 1.93302 2.43810 2.75742 2.87797 3.20470 3.34906 3.48351 3.90619 3.95109 4.04221 4.04894 4.13842 4.18377 4.25197 4.37220 4.50659 4.53846 4.58186 4.60216 4.65390 4.67649 4.71199 4.86336 4.92505 4.93315 4.97062 5.03425 5.04342 5.09978 5.15579 5.24672 5.29630 5.34101 5.42224 5.43047 5.48392 5.50238 5.53382 5.54986 5.56870 5.65599 5.77956 5.88960 5.93184 6.13612 6.29462 6.72324 6.92897 7.29622 7.45689 8.98470 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.002501 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.041152 B =11193.293775 C =12023.867370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.159 3.841 14 N -0.713 5.713 15 C 0.706 3.294 16 O -0.616 6.616 17 N -0.569 5.569 18 C 0.091 3.909 19 C -0.021 4.021 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.072 4.072 24 C -0.143 4.143 25 C -0.099 4.099 26 C -0.167 4.167 27 C 0.138 3.862 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.067 0.933 34 H -0.014 1.014 35 H -0.013 1.013 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.410 0.590 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.155 0.845 49 H 0.156 0.844 50 H 0.139 0.861 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 11.035 27.436 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.182 1.182 13 C 0.035 3.965 14 N -0.369 5.369 15 C 0.408 3.592 16 O -0.496 6.496 17 N -0.295 5.295 18 C -0.030 4.030 19 C -0.022 4.022 20 C -0.189 4.189 21 C -0.188 4.188 22 C -0.133 4.133 23 C -0.091 4.091 24 C -0.161 4.161 25 C -0.117 4.117 26 C -0.188 4.188 27 C 0.042 3.958 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.173 0.827 49 H 0.173 0.827 50 H 0.157 0.843 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.558 10.262 27.163 30.271 hybrid contribution 0.356 -0.356 -1.703 1.775 sum -8.201 9.907 25.460 28.524 Atomic orbital electron populations 1.21689 0.93401 1.01021 1.01673 1.20710 0.96836 0.96342 0.92397 1.21690 0.99927 0.94528 1.01681 1.18972 0.94334 0.94257 0.92230 1.21575 1.30423 1.12080 0.90916 0.90733 1.25963 0.95690 0.95846 1.02782 1.70126 1.38846 1.25001 1.24095 0.85529 0.79228 0.78079 0.78714 1.20176 1.21681 1.18179 1.21175 0.97758 0.95033 0.82554 1.45038 1.55661 1.33181 1.03033 1.15852 0.80611 0.81993 0.80772 1.90874 1.40023 1.32805 1.85931 1.45021 1.50732 1.30355 1.03372 1.22730 0.94746 0.86200 0.99295 1.20108 0.97097 0.94544 0.90417 1.21849 0.91134 1.02209 1.03659 1.21847 1.00515 0.93458 1.03015 1.20233 1.01489 0.98034 0.93578 1.20705 0.98137 0.97290 0.92931 1.21370 0.98481 0.95543 1.00744 1.21148 0.99090 1.00162 0.91310 1.20985 1.02484 0.98176 0.97201 1.18506 0.98114 0.95958 0.83222 0.91400 0.92188 0.94433 0.94484 0.92141 0.91422 0.99559 0.99507 0.93190 0.93609 0.93591 0.75127 0.88530 0.88599 0.90432 0.89955 0.93638 0.93663 0.89959 0.90414 0.82724 0.82660 0.84279 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -27.22 7.65 25.60 0.20 -27.03 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 9 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 13 C 0.16 5.91 4.57 86.38 0.39 6.30 16 14 N -0.71 -21.42 4.91 -478.53 -2.35 -23.77 16 15 C 0.71 23.94 8.42 179.05 1.51 25.45 16 16 O -0.62 -26.38 14.54 -4.01 -0.06 -26.44 16 17 N -0.57 -15.34 3.13 -646.30 -2.02 -17.36 16 18 C 0.09 1.55 5.65 86.62 0.49 2.04 16 19 C -0.02 -0.29 1.03 -52.51 -0.05 -0.34 16 20 C -0.13 -1.28 8.38 71.98 0.60 -0.67 16 21 C -0.13 -1.27 8.39 71.98 0.60 -0.67 16 22 C -0.13 -2.47 4.87 -19.64 -0.10 -2.57 16 23 C -0.07 -1.08 10.04 22.25 0.22 -0.85 16 24 C -0.14 -2.22 10.06 22.28 0.22 -1.99 16 25 C -0.10 -2.08 10.02 22.19 0.22 -1.86 16 26 C -0.17 -4.84 9.46 22.51 0.21 -4.63 16 27 C 0.14 3.72 6.62 38.27 0.25 3.97 16 28 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 29 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 2.12 6.62 -2.39 -0.02 2.11 16 33 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 34 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 9.57 5.10 -92.71 -0.47 9.10 16 40 H 0.10 1.35 7.69 -2.39 -0.02 1.33 16 41 H 0.10 1.35 7.71 -2.39 -0.02 1.33 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 49 H 0.16 1.40 8.06 -2.92 -0.02 1.37 16 50 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 51 H 0.11 3.72 6.29 -2.91 -0.02 3.70 16 Total: -1.00 -74.21 397.61 4.81 -69.40 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.44 Total: 19.64 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 6.49 Total: -9.84 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -4.09 Total: -98.15 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.21 4.81 -69.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588754683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.065 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds