Wall clock time and date at job start Tue Mar 31 2020 16:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46700 * 2 1 4 4 C 1.50696 * 109.47405 * 120.00016 * 2 1 3 5 5 H 1.08001 * 119.99495 * 118.48643 * 4 2 1 6 6 C 1.37870 * 120.00184 * 298.48652 * 4 2 1 7 7 N 1.31513 * 120.00150 * 0.58698 * 6 4 2 8 8 Si 1.86795 * 120.00020 * 180.59327 * 6 4 2 9 9 H 1.48508 * 109.47227 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47228 * 299.99932 * 8 6 4 11 11 H 1.48504 * 109.47395 * 59.99978 * 8 6 4 12 12 C 1.53001 * 109.46665 * 240.00455 * 2 1 3 13 13 N 1.46496 * 109.47566 * 59.99841 * 12 2 1 14 14 C 1.34773 * 120.00349 * 179.97438 * 13 12 2 15 15 O 1.21585 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00365 * 179.97438 * 14 13 12 17 17 C 1.47064 * 136.05423 * 359.63354 * 16 14 13 18 18 C 1.53756 * 87.88737 * 152.95859 * 17 16 14 19 19 C 1.52997 * 114.39944 * 272.67426 * 18 17 16 20 20 C 1.53005 * 114.08578 * 139.77628 * 18 17 16 21 21 C 1.47065 * 136.05799 * 180.02562 * 16 14 13 22 22 H 1.08995 * 113.46690 * 321.86225 * 21 16 14 23 23 C 1.50696 * 113.47031 * 92.30958 * 21 16 14 24 24 C 1.38241 * 119.99817 * 21.58483 * 23 21 16 25 25 C 1.38230 * 119.99857 * 179.76496 * 24 23 21 26 26 C 1.38237 * 120.00099 * 0.51536 * 25 24 23 27 27 C 1.38234 * 120.00003 * 359.74010 * 26 25 24 28 28 C 1.38228 * 120.00326 * 201.86694 * 23 21 16 29 29 H 1.09000 * 109.46732 * 292.10991 * 1 2 3 30 30 H 1.08991 * 109.47349 * 52.11036 * 1 2 3 31 31 H 1.09002 * 109.46805 * 172.11418 * 1 2 3 32 32 H 1.09002 * 109.46552 * 187.96071 * 3 2 1 33 33 H 1.09000 * 109.46974 * 307.95370 * 3 2 1 34 34 H 1.08996 * 109.47300 * 67.95965 * 3 2 1 35 35 H 0.97000 * 120.00079 * 2.43602 * 7 6 4 36 36 H 1.09007 * 109.46842 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.47268 * 299.99601 * 12 2 1 38 38 H 0.97000 * 120.00053 * 359.97438 * 13 12 2 39 39 H 1.09002 * 113.47086 * 267.69329 * 17 16 14 40 40 H 1.09000 * 113.46969 * 38.13427 * 17 16 14 41 41 H 1.09006 * 109.47307 * 153.58051 * 19 18 17 42 42 H 1.08992 * 109.47413 * 273.58562 * 19 18 17 43 43 H 1.09000 * 109.47011 * 33.58774 * 19 18 17 44 44 H 1.08997 * 109.47455 * 326.56737 * 20 18 17 45 45 H 1.09003 * 109.46927 * 86.56915 * 20 18 17 46 46 H 1.09002 * 109.47212 * 206.55950 * 20 18 17 47 47 H 1.07999 * 119.99871 * 0.02562 * 24 23 21 48 48 H 1.08004 * 120.00075 * 180.23013 * 25 24 23 49 49 H 1.08005 * 120.00155 * 179.71711 * 26 25 24 50 50 H 1.07999 * 120.00372 * 179.97438 * 27 26 25 51 51 H 1.08002 * 119.99688 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6330 -1.6025 1.1314 6 6 1.7254 -0.2215 2.4824 7 7 0.9844 0.8583 2.6032 8 14 2.3620 -1.0926 4.0072 9 1 1.8956 -0.3728 5.2196 10 1 1.8502 -2.4864 4.0310 11 1 3.8467 -1.1108 3.9835 12 6 2.0399 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8775 -0.4907 -3.6696 15 8 2.5765 -1.4792 -3.7812 16 7 1.4278 0.1444 -4.7700 17 6 0.5875 1.3195 -5.0453 18 6 1.3411 1.4756 -6.3764 19 6 2.6239 2.3042 -6.2831 20 6 0.4493 1.8665 -7.5567 21 6 1.5557 -0.0369 -6.2238 22 1 2.5465 -0.3682 -6.5344 23 6 0.4487 -0.8637 -6.8253 24 6 -0.7565 -0.9933 -6.1606 25 6 -1.7737 -1.7478 -6.7146 26 6 -1.5820 -2.3815 -7.9281 27 6 -0.3750 -2.2563 -8.5902 28 6 0.6403 -1.4975 -8.0387 29 1 -0.3633 0.3868 0.9521 30 1 -0.3633 0.6311 -0.8109 31 1 -0.3633 -1.0180 -0.1410 32 1 3.1206 1.4458 -0.1423 33 1 1.5651 1.9957 -0.8103 34 1 1.7975 1.9137 0.9525 35 1 0.6245 1.2905 1.8128 36 1 3.1300 -0.7208 -1.2496 37 1 1.6766 -1.7488 -1.2494 38 1 0.9936 0.7579 -2.3564 39 1 -0.4683 1.0788 -5.1698 40 1 0.7534 2.1439 -4.3517 41 1 3.3123 1.9980 -7.0708 42 1 2.3834 3.3607 -6.4012 43 1 3.0899 2.1441 -5.3109 44 1 -0.5349 1.4145 -7.4338 45 1 0.3491 2.9513 -7.5927 46 1 0.8986 1.5123 -8.4845 47 1 -0.9048 -0.5015 -5.2106 48 1 -2.7166 -1.8459 -6.1971 49 1 -2.3752 -2.9748 -8.3588 50 1 -0.2251 -2.7517 -9.5381 51 1 1.5834 -1.3996 -8.5559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:33 Heat of formation + Delta-G solvation = 38.828941 kcal Electronic energy + Delta-G solvation = -29296.343830 eV Core-core repulsion = 25583.288902 eV Total energy + Delta-G solvation = -3713.054928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54300 -39.04618 -38.17621 -36.64759 -33.50983 -32.52051 -31.56723 -31.04600 -30.35485 -27.60759 -26.95406 -26.28116 -26.04852 -25.59360 -23.90673 -22.67646 -21.82071 -20.15211 -18.89484 -18.80058 -18.05440 -16.79704 -16.52938 -16.09841 -15.71941 -15.29703 -14.88308 -14.70156 -14.35502 -14.27577 -13.88454 -13.73388 -13.61068 -13.16009 -12.98030 -12.78472 -12.71001 -12.59926 -12.43610 -12.31108 -12.03378 -11.73989 -11.56458 -11.43591 -11.28391 -11.14443 -11.10996 -10.90973 -10.62551 -10.60569 -10.50203 -10.08459 -9.88535 -9.77644 -9.50604 -9.09256 -8.88575 -8.74685 -8.43706 -8.34257 -8.22160 -6.26286 -4.11047 1.12293 1.23852 2.68588 3.44833 3.45166 3.54071 3.56660 3.63854 3.97636 4.24383 4.45063 4.53449 4.66181 4.72440 4.78482 4.87965 4.92171 4.95829 5.21227 5.29432 5.33066 5.34752 5.38955 5.48316 5.53366 5.66834 5.67237 5.70106 5.71763 5.80292 5.87717 5.89930 6.03442 6.11620 6.20204 6.25909 6.29580 6.34540 6.42730 6.56882 6.64369 6.71869 6.81009 6.81434 6.95104 7.07366 7.13803 7.50449 7.53372 7.66875 8.19663 8.37884 8.40927 8.83324 8.99803 9.59709 10.99826 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.002869 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.972458 B = 9758.340714 C =10376.168152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 C -0.145 4.145 4 C -0.585 4.585 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.918 5.918 8 Si 1.065 2.935 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.159 3.841 13 N -0.731 5.731 14 C 0.730 3.270 15 O -0.591 6.591 16 N -0.658 5.658 17 C 0.095 3.905 18 C -0.088 4.088 19 C -0.124 4.124 20 C -0.132 4.132 21 C 0.197 3.803 22 H 0.093 0.907 23 C -0.080 4.080 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.014 0.986 34 H 0.074 0.926 35 H 0.280 0.720 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.392 0.608 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 2.955 -23.496 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 C -0.203 4.203 4 C -0.623 4.623 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.558 5.558 8 Si 0.893 3.107 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.215 1.215 12 C 0.036 3.964 13 N -0.385 5.385 14 C 0.433 3.567 15 O -0.469 6.469 16 N -0.397 5.397 17 C -0.028 4.028 18 C -0.089 4.089 19 C -0.181 4.181 20 C -0.190 4.190 21 C 0.092 3.908 22 H 0.111 0.889 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.124 4.124 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.226 0.774 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.053 2.166 -21.616 22.099 hybrid contribution -0.392 0.079 -1.557 1.607 sum -4.445 2.245 -23.173 23.702 Atomic orbital electron populations 1.22038 0.98431 0.99164 1.00377 1.18522 0.92192 0.92805 0.92333 1.22056 0.99222 0.98309 1.00713 1.21758 1.36156 1.13234 0.91191 0.92963 1.25668 0.95118 0.96039 1.00958 1.70877 1.31908 1.18429 1.34636 0.83601 0.76030 0.75375 0.75651 1.20841 1.21454 1.21454 1.21482 0.97980 0.95263 0.81651 1.45430 1.55668 1.33135 1.04270 1.15390 0.80244 0.81705 0.79339 1.90898 1.43531 1.27196 1.85317 1.48687 1.54601 1.31872 1.04586 1.23412 0.95759 0.88364 0.95266 1.22253 0.97205 0.93944 0.95491 1.21504 0.94934 0.98919 1.02730 1.21663 0.99082 1.01471 0.96749 1.21092 0.97069 0.93533 0.79092 0.88943 1.19840 0.94841 0.98260 0.95203 1.21184 0.92781 0.98792 0.99649 1.21167 0.99129 0.97520 0.95942 1.21157 0.97509 0.99700 0.95567 1.21093 0.93560 0.99139 1.00048 1.20907 0.99201 0.97050 0.95260 0.91146 0.96686 0.94505 0.94516 0.96737 0.90706 0.90334 0.92764 0.92819 0.77414 0.89566 0.90571 0.91920 0.91743 0.91866 0.91939 0.91998 0.91941 0.85778 0.86081 0.86216 0.86050 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 7.88 37.16 0.29 -2.90 16 2 C 0.04 1.00 0.50 -155.66 -0.08 0.92 16 3 C -0.14 -3.27 7.86 37.16 0.29 -2.98 16 4 C -0.58 -15.83 8.01 -34.44 -0.28 -16.11 16 5 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 6 C 0.03 0.71 5.10 -17.82 -0.09 0.62 16 7 N -0.92 -26.01 12.11 55.43 0.67 -25.34 16 8 Si 1.07 24.69 29.90 -169.99 -5.08 19.60 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.16 3.54 4.49 -4.04 -0.02 3.52 16 13 N -0.73 -13.79 5.05 -65.23 -0.33 -14.11 16 14 C 0.73 13.94 8.79 -86.92 -0.76 13.18 16 15 O -0.59 -13.79 17.12 5.29 0.09 -13.70 16 16 N -0.66 -9.45 2.74 -184.30 -0.50 -9.96 16 17 C 0.10 1.01 6.66 -8.37 -0.06 0.95 16 18 C -0.09 -0.80 1.50 -153.84 -0.23 -1.03 16 19 C -0.12 -1.07 9.24 37.16 0.34 -0.73 16 20 C -0.13 -0.94 8.47 37.16 0.31 -0.63 16 21 C 0.20 2.35 4.11 -73.53 -0.30 2.05 16 22 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 23 C -0.08 -0.91 3.83 -104.63 -0.40 -1.31 16 24 C -0.11 -1.23 8.10 -39.58 -0.32 -1.55 16 25 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 28 C -0.11 -1.05 9.74 -39.58 -0.39 -1.44 16 29 H 0.07 1.74 5.31 -51.93 -0.28 1.46 16 30 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 31 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.01 0.27 7.05 -51.93 -0.37 -0.09 16 34 H 0.07 1.86 5.14 -51.93 -0.27 1.59 16 35 H 0.28 7.67 3.58 -40.82 -0.15 7.53 16 36 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.39 6.66 6.03 -40.82 -0.25 6.42 16 39 H 0.09 0.83 5.29 -51.93 -0.27 0.55 16 40 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 43 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 44 H 0.06 0.48 6.86 -51.93 -0.36 0.12 16 45 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.12 1.50 5.44 -52.49 -0.29 1.21 16 48 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 49 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -32.06 393.66 -10.21 -42.27 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.11 Total: 7.40 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.87 Total: -12.10 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.16 Total: -49.41 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.06 -10.21 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.099 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds