Wall clock time and date at job start Tue Mar 31 2020 16:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46700 * 2 1 4 4 C 1.50696 * 109.47405 * 120.00016 * 2 1 3 5 5 H 1.08001 * 119.99495 * 118.48643 * 4 2 1 6 6 C 1.37870 * 120.00184 * 298.48652 * 4 2 1 7 7 N 1.31513 * 120.00150 * 0.58698 * 6 4 2 8 8 Si 1.86795 * 120.00020 * 180.59327 * 6 4 2 9 9 H 1.48508 * 109.47227 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47228 * 299.99932 * 8 6 4 11 11 H 1.48504 * 109.47395 * 59.99978 * 8 6 4 12 12 C 1.53001 * 109.46665 * 240.00455 * 2 1 3 13 13 N 1.46496 * 109.47566 * 59.99841 * 12 2 1 14 14 C 1.34773 * 120.00349 * 179.97438 * 13 12 2 15 15 O 1.21585 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00365 * 179.97438 * 14 13 12 17 17 C 1.47064 * 136.05423 * 359.63354 * 16 14 13 18 18 C 1.53756 * 87.88737 * 152.95859 * 17 16 14 19 19 C 1.52997 * 114.39944 * 272.67426 * 18 17 16 20 20 C 1.53005 * 114.08578 * 139.77628 * 18 17 16 21 21 C 1.47065 * 136.05799 * 180.02562 * 16 14 13 22 22 H 1.08995 * 113.46690 * 321.86225 * 21 16 14 23 23 C 1.50696 * 113.47031 * 92.30958 * 21 16 14 24 24 C 1.38241 * 119.99817 * 21.58483 * 23 21 16 25 25 C 1.38230 * 119.99857 * 179.76496 * 24 23 21 26 26 C 1.38237 * 120.00099 * 0.51536 * 25 24 23 27 27 C 1.38234 * 120.00003 * 359.74010 * 26 25 24 28 28 C 1.38228 * 120.00326 * 201.86694 * 23 21 16 29 29 H 1.09000 * 109.46732 * 292.10991 * 1 2 3 30 30 H 1.08991 * 109.47349 * 52.11036 * 1 2 3 31 31 H 1.09002 * 109.46805 * 172.11418 * 1 2 3 32 32 H 1.09002 * 109.46552 * 187.96071 * 3 2 1 33 33 H 1.09000 * 109.46974 * 307.95370 * 3 2 1 34 34 H 1.08996 * 109.47300 * 67.95965 * 3 2 1 35 35 H 0.97000 * 120.00079 * 2.43602 * 7 6 4 36 36 H 1.09007 * 109.46842 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.47268 * 299.99601 * 12 2 1 38 38 H 0.97000 * 120.00053 * 359.97438 * 13 12 2 39 39 H 1.09002 * 113.47086 * 267.69329 * 17 16 14 40 40 H 1.09000 * 113.46969 * 38.13427 * 17 16 14 41 41 H 1.09006 * 109.47307 * 153.58051 * 19 18 17 42 42 H 1.08992 * 109.47413 * 273.58562 * 19 18 17 43 43 H 1.09000 * 109.47011 * 33.58774 * 19 18 17 44 44 H 1.08997 * 109.47455 * 326.56737 * 20 18 17 45 45 H 1.09003 * 109.46927 * 86.56915 * 20 18 17 46 46 H 1.09002 * 109.47212 * 206.55950 * 20 18 17 47 47 H 1.07999 * 119.99871 * 0.02562 * 24 23 21 48 48 H 1.08004 * 120.00075 * 180.23013 * 25 24 23 49 49 H 1.08005 * 120.00155 * 179.71711 * 26 25 24 50 50 H 1.07999 * 120.00372 * 179.97438 * 27 26 25 51 51 H 1.08002 * 119.99688 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6330 -1.6025 1.1314 6 6 1.7254 -0.2215 2.4824 7 7 0.9844 0.8583 2.6032 8 14 2.3620 -1.0926 4.0072 9 1 1.8956 -0.3728 5.2196 10 1 1.8502 -2.4864 4.0310 11 1 3.8467 -1.1108 3.9835 12 6 2.0399 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8775 -0.4907 -3.6696 15 8 2.5765 -1.4792 -3.7812 16 7 1.4278 0.1444 -4.7700 17 6 0.5875 1.3195 -5.0453 18 6 1.3411 1.4756 -6.3764 19 6 2.6239 2.3042 -6.2831 20 6 0.4493 1.8665 -7.5567 21 6 1.5557 -0.0369 -6.2238 22 1 2.5465 -0.3682 -6.5344 23 6 0.4487 -0.8637 -6.8253 24 6 -0.7565 -0.9933 -6.1606 25 6 -1.7737 -1.7478 -6.7146 26 6 -1.5820 -2.3815 -7.9281 27 6 -0.3750 -2.2563 -8.5902 28 6 0.6403 -1.4975 -8.0387 29 1 -0.3633 0.3868 0.9521 30 1 -0.3633 0.6311 -0.8109 31 1 -0.3633 -1.0180 -0.1410 32 1 3.1206 1.4458 -0.1423 33 1 1.5651 1.9957 -0.8103 34 1 1.7975 1.9137 0.9525 35 1 0.6245 1.2905 1.8128 36 1 3.1300 -0.7208 -1.2496 37 1 1.6766 -1.7488 -1.2494 38 1 0.9936 0.7579 -2.3564 39 1 -0.4683 1.0788 -5.1698 40 1 0.7534 2.1439 -4.3517 41 1 3.3123 1.9980 -7.0708 42 1 2.3834 3.3607 -6.4012 43 1 3.0899 2.1441 -5.3109 44 1 -0.5349 1.4145 -7.4338 45 1 0.3491 2.9513 -7.5927 46 1 0.8986 1.5123 -8.4845 47 1 -0.9048 -0.5015 -5.2106 48 1 -2.7166 -1.8459 -6.1971 49 1 -2.3752 -2.9748 -8.3588 50 1 -0.2251 -2.7517 -9.5381 51 1 1.5834 -1.3996 -8.5559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:32 Heat of formation + Delta-G solvation = 22.370510 kcal Electronic energy + Delta-G solvation = -29297.057521 eV Core-core repulsion = 25583.288902 eV Total energy + Delta-G solvation = -3713.768619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52106 -40.41128 -39.18107 -38.43005 -35.27809 -33.58604 -32.50981 -32.10243 -31.73591 -28.32662 -28.26407 -27.90833 -27.41085 -27.12478 -25.63369 -23.43682 -22.66049 -21.57406 -20.77745 -19.69471 -19.41435 -18.37379 -17.66122 -17.43494 -16.72958 -16.22046 -16.10061 -15.79171 -15.67922 -15.58778 -15.27043 -15.00316 -14.62885 -14.58897 -14.40508 -14.33428 -13.92769 -13.53277 -13.38674 -13.31059 -13.15013 -13.05696 -12.81498 -12.78129 -12.58370 -12.46680 -12.43934 -12.27121 -11.92343 -11.91444 -11.87437 -11.75591 -11.44065 -11.38805 -11.17918 -10.44132 -10.40536 -10.27271 -9.85602 -9.68052 -9.53541 -8.40769 -6.26979 0.33807 0.47408 1.43137 1.56309 1.61381 1.81113 2.07205 2.58584 2.75974 2.99183 3.16054 3.23561 3.58082 3.85401 3.90717 4.03131 4.11917 4.14238 4.21859 4.25131 4.29956 4.33494 4.42940 4.47321 4.58762 4.68025 4.71961 4.75614 4.77920 4.79483 4.82437 4.87631 4.94050 5.01486 5.01733 5.05320 5.09865 5.12135 5.13142 5.16871 5.28977 5.42186 5.45968 5.55122 5.59773 5.60469 5.61952 5.79283 6.07575 6.13817 6.22155 6.28862 6.72121 6.98932 7.48381 7.51952 8.87271 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.002869 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.972458 B = 9758.340714 C =10376.168152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.038 3.962 3 C -0.134 4.134 4 C -0.606 4.606 5 H 0.037 0.963 6 C -0.013 4.013 7 N -0.937 5.937 8 Si 1.104 2.896 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.178 3.822 13 N -0.723 5.723 14 C 0.726 3.274 15 O -0.642 6.642 16 N -0.658 5.658 17 C 0.092 3.908 18 C -0.068 4.068 19 C -0.123 4.123 20 C -0.125 4.125 21 C 0.189 3.811 22 H 0.079 0.921 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.279 0.721 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.403 0.597 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.132 0.868 49 H 0.143 0.857 50 H 0.147 0.853 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 3.843 -25.804 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.037 3.963 3 C -0.192 4.192 4 C -0.644 4.644 5 H 0.055 0.945 6 C -0.213 4.213 7 N -0.578 5.578 8 Si 0.928 3.072 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.054 3.946 13 N -0.378 5.378 14 C 0.429 3.571 15 O -0.524 6.524 16 N -0.396 5.396 17 C -0.030 4.030 18 C -0.069 4.069 19 C -0.180 4.180 20 C -0.182 4.182 21 C 0.085 3.915 22 H 0.097 0.903 23 C -0.094 4.094 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.131 4.131 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.239 0.761 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.132 0.868 48 H 0.150 0.850 49 H 0.161 0.839 50 H 0.165 0.835 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.155 3.106 -23.984 24.728 hybrid contribution -0.084 -0.211 -0.970 0.996 sum -5.239 2.895 -24.954 25.662 Atomic orbital electron populations 1.21873 0.97344 0.99259 1.00408 1.18512 0.92965 0.93207 0.91587 1.21894 0.98950 0.97632 1.00720 1.22080 1.36200 1.13153 0.92998 0.94496 1.26763 0.94912 0.96135 1.03517 1.70934 1.32814 1.19155 1.34879 0.83083 0.76208 0.75003 0.72955 1.20779 1.20331 1.20362 1.20995 0.96582 0.94388 0.82670 1.45089 1.55852 1.33261 1.03558 1.15517 0.80049 0.81351 0.80146 1.90850 1.45825 1.29534 1.86210 1.48710 1.54097 1.32291 1.04474 1.23718 0.96149 0.86904 0.96244 1.22192 0.97443 0.91733 0.95486 1.21527 0.94692 1.00180 1.01618 1.21627 0.98250 1.02580 0.95779 1.21395 0.96923 0.95902 0.77297 0.90274 1.19828 0.94503 0.99072 0.96009 1.21201 0.93542 0.99924 0.99610 1.21388 0.99335 0.97434 0.96607 1.21493 0.98309 0.99274 0.95061 1.21443 0.93058 0.98422 1.00873 1.21153 1.00224 0.96838 0.94926 0.93219 0.93464 0.95240 0.95277 0.93503 0.92820 0.90489 0.94777 0.94902 0.76134 0.88242 0.89652 0.91043 0.89588 0.94371 0.92277 0.90196 0.91122 0.86828 0.84967 0.83877 0.83476 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 7.88 71.98 0.57 -5.29 16 2 C 0.04 1.82 0.50 -52.93 -0.03 1.79 16 3 C -0.13 -6.02 7.86 71.98 0.57 -5.45 16 4 C -0.61 -33.48 8.01 25.60 0.21 -33.28 16 5 H 0.04 2.10 7.74 -2.91 -0.02 2.07 16 6 C -0.01 -0.74 5.10 84.65 0.43 -0.31 16 7 N -0.94 -53.41 12.11 21.44 0.26 -53.15 16 8 Si 1.10 50.02 29.90 68.60 2.05 52.07 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.18 8.14 4.49 86.38 0.39 8.52 16 13 N -0.72 -27.39 5.05 -478.54 -2.42 -29.81 16 14 C 0.73 28.26 8.79 179.06 1.57 29.84 16 15 O -0.64 -31.09 17.12 -3.98 -0.07 -31.16 16 16 N -0.66 -18.78 2.74 -855.26 -2.34 -21.12 16 17 C 0.09 1.79 6.66 83.27 0.55 2.35 16 18 C -0.07 -1.10 1.50 -51.75 -0.08 -1.18 16 19 C -0.12 -1.90 9.24 71.98 0.67 -1.23 16 20 C -0.12 -1.42 8.47 71.98 0.61 -0.81 16 21 C 0.19 4.39 4.11 41.05 0.17 4.56 16 22 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 23 C -0.09 -2.03 3.83 -19.87 -0.08 -2.10 16 24 C -0.12 -2.80 8.10 22.27 0.18 -2.62 16 25 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 26 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 27 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 28 C -0.11 -2.06 9.74 22.27 0.22 -1.84 16 29 H 0.05 2.45 5.31 -2.39 -0.01 2.43 16 30 H 0.05 1.76 7.05 -2.39 -0.02 1.74 16 31 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.05 1.75 7.05 -2.39 -0.02 1.73 16 34 H 0.05 2.66 5.14 -2.39 -0.01 2.65 16 35 H 0.28 15.41 3.58 -92.71 -0.33 15.08 16 36 H 0.03 1.67 8.14 -2.38 -0.02 1.66 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.40 13.25 6.03 -92.71 -0.56 12.69 16 39 H 0.10 1.74 5.29 -2.39 -0.01 1.73 16 40 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 41 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.09 0.97 8.13 -2.39 -0.02 0.95 16 43 H 0.04 0.79 7.93 -2.39 -0.02 0.77 16 44 H 0.06 0.75 6.86 -2.39 -0.02 0.73 16 45 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 2.69 5.44 -2.91 -0.02 2.68 16 48 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 49 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 50 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 51 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -71.41 393.66 4.90 -66.50 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.80 Total: 29.40 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 6.62 Total: -12.73 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.50 Total: -104.08 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.07 Total: -31.16 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -71.41 4.90 -66.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.875 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds