Wall clock time and date at job start Tue Mar 31 2020 16:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47313 * 2 1 4 4 C 1.50706 * 109.47143 * 119.99510 * 2 1 3 5 5 H 1.07999 * 120.00136 * 117.34637 * 4 2 1 6 6 C 1.37878 * 119.99882 * 297.35352 * 4 2 1 7 7 N 1.31513 * 120.00044 * 0.25078 * 6 4 2 8 8 Si 1.86802 * 119.99842 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47074 * 270.27186 * 8 6 4 10 10 H 1.48499 * 109.47115 * 30.26677 * 8 6 4 11 11 H 1.48501 * 109.47323 * 150.27249 * 8 6 4 12 12 C 1.53000 * 109.47176 * 239.99411 * 2 1 3 13 13 N 1.46500 * 109.47003 * 60.00624 * 12 2 1 14 14 C 1.34773 * 120.00182 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99758 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00198 * 179.97438 * 14 13 12 17 17 C 1.47065 * 136.05601 * 0.02562 * 16 14 13 18 18 C 1.53505 * 87.98427 * 207.07972 * 17 16 14 19 19 C 1.53001 * 114.20575 * 87.51457 * 18 17 16 20 20 C 1.52994 * 114.20868 * 220.14377 * 18 17 16 21 21 C 1.47070 * 136.05585 * 179.62493 * 16 14 13 22 22 H 1.09004 * 113.46677 * 38.14145 * 21 16 14 23 23 C 1.50692 * 113.46879 * 267.69916 * 21 16 14 24 24 C 1.38232 * 120.00000 * 159.18981 * 23 21 16 25 25 C 1.38236 * 119.99899 * 179.80647 * 24 23 21 26 26 C 1.38233 * 120.00106 * 0.42448 * 25 24 23 27 27 C 1.38236 * 120.00278 * 359.80768 * 26 25 24 28 28 C 1.38235 * 119.99369 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47324 * 288.39586 * 1 2 3 30 30 H 1.09005 * 109.47322 * 48.39022 * 1 2 3 31 31 H 1.08992 * 109.47574 * 168.39363 * 1 2 3 32 32 H 1.09004 * 109.47314 * 192.72244 * 3 2 1 33 33 H 1.09003 * 109.47008 * 312.71800 * 3 2 1 34 34 H 1.08997 * 109.47315 * 72.72130 * 3 2 1 35 35 H 0.96992 * 120.00043 * 6.63493 * 7 6 4 36 36 H 1.09008 * 109.46877 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.47033 * 300.00279 * 12 2 1 38 38 H 0.97003 * 119.99998 * 359.97438 * 13 12 2 39 39 H 1.09001 * 113.46490 * 321.85378 * 17 16 14 40 40 H 1.08997 * 113.47039 * 92.24701 * 17 16 14 41 41 H 1.08997 * 109.46736 * 79.50678 * 19 18 17 42 42 H 1.08997 * 109.47207 * 199.50500 * 19 18 17 43 43 H 1.08999 * 109.47637 * 319.50885 * 19 18 17 44 44 H 1.09001 * 109.46792 * 40.49454 * 20 18 17 45 45 H 1.08998 * 109.47219 * 160.49394 * 20 18 17 46 46 H 1.09000 * 109.47211 * 280.49858 * 20 18 17 47 47 H 1.07998 * 120.00340 * 0.02562 * 24 23 21 48 48 H 1.08009 * 119.99992 * 180.21163 * 25 24 23 49 49 H 1.08004 * 120.00058 * 179.78841 * 26 25 24 50 50 H 1.07990 * 120.00151 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99846 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6174 -1.6128 1.1322 6 6 1.7448 -0.2082 2.4821 7 7 1.0281 0.8879 2.6020 8 14 2.3669 -1.0890 4.0074 9 1 1.3619 -2.0909 4.4448 10 1 3.6464 -1.7751 3.6955 11 1 2.5868 -0.1014 5.0943 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 1.8769 -0.4916 -3.6694 15 8 2.5759 -1.4803 -3.7809 16 7 1.4273 0.1434 -4.7699 17 6 0.5936 1.3232 -5.0454 18 6 0.2007 0.6674 -6.3765 19 6 -1.0071 -0.2672 -6.2831 20 6 0.1237 1.6390 -7.5559 21 6 1.5604 -0.0344 -6.2238 22 1 1.5493 -1.0786 -6.5362 23 6 2.7063 0.7411 -6.8208 24 6 3.2309 0.3673 -8.0438 25 6 4.2795 1.0812 -8.5934 26 6 4.8092 2.1633 -7.9157 27 6 4.2877 2.5342 -6.6904 28 6 3.2369 1.8225 -6.1425 29 1 -0.3634 0.3243 0.9751 30 1 -0.3634 0.6824 -0.7684 31 1 -0.3634 -1.0066 -0.2067 32 1 3.1062 1.4509 -0.2263 33 1 1.5038 2.0174 -0.7551 34 1 1.8734 1.8868 0.9813 35 1 0.6210 1.2894 1.8185 36 1 3.1300 -0.7209 -1.2493 37 1 1.6766 -1.7490 -1.2491 38 1 0.9938 0.7577 -2.3565 39 1 -0.2414 1.4356 -4.3538 40 1 1.1676 2.2419 -5.1659 41 1 -1.9235 0.3229 -6.2782 42 1 -1.0129 -0.9402 -7.1404 43 1 -0.9454 -0.8500 -5.3640 44 1 0.9509 2.3464 -7.4984 45 1 0.1865 1.0816 -8.4905 46 1 -0.8212 2.1811 -7.5189 47 1 2.8194 -0.4801 -8.5718 48 1 4.6872 0.7912 -9.5506 49 1 5.6306 2.7189 -8.3435 50 1 4.7018 3.3794 -6.1608 51 1 2.8298 2.1119 -5.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:36 Heat of formation + Delta-G solvation = 37.454687 kcal Electronic energy + Delta-G solvation = -29297.688237 eV Core-core repulsion = 25584.573717 eV Total energy + Delta-G solvation = -3713.114520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53734 -39.04467 -38.17534 -36.64624 -33.50985 -32.52414 -31.57108 -31.04032 -30.36090 -27.59898 -26.95657 -26.27182 -26.04415 -25.58333 -23.91080 -22.67612 -21.81996 -20.14490 -18.91076 -18.78479 -18.04540 -16.79918 -16.51463 -16.09505 -15.72046 -15.28691 -14.88351 -14.71421 -14.35756 -14.26563 -13.89618 -13.72978 -13.60472 -13.15912 -12.97457 -12.78013 -12.71280 -12.59942 -12.44627 -12.31556 -12.04232 -11.73425 -11.55687 -11.43219 -11.31537 -11.14826 -11.11510 -10.90798 -10.63662 -10.55187 -10.50612 -10.10280 -9.88757 -9.78045 -9.50568 -9.09187 -8.88320 -8.74572 -8.45042 -8.32424 -8.22350 -6.25974 -4.11501 1.12428 1.24005 2.68504 3.43960 3.46407 3.53988 3.56467 3.62689 3.97955 4.25024 4.45121 4.53293 4.66818 4.72935 4.78713 4.88023 4.92896 4.95727 5.21762 5.29360 5.32216 5.34589 5.38679 5.48663 5.53123 5.66360 5.66947 5.70052 5.71707 5.80404 5.87867 5.90152 6.02648 6.11946 6.19934 6.25793 6.29636 6.34765 6.42911 6.57804 6.64026 6.72586 6.80745 6.81548 6.95340 7.07195 7.14173 7.51540 7.53723 7.67838 8.19373 8.37846 8.40879 8.83125 8.99746 9.59164 10.99951 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002876 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.854402 B = 9733.205667 C =10361.042485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 C -0.147 4.147 4 C -0.582 4.582 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.919 5.919 8 Si 1.066 2.934 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.284 1.284 12 C 0.159 3.841 13 N -0.731 5.731 14 C 0.730 3.270 15 O -0.591 6.591 16 N -0.658 5.658 17 C 0.096 3.904 18 C -0.088 4.088 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.197 3.803 22 H 0.093 0.907 23 C -0.080 4.080 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.015 0.985 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.014 0.986 34 H 0.078 0.922 35 H 0.281 0.719 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.392 0.608 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 5.162 -23.496 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.041 3.959 3 C -0.205 4.205 4 C -0.621 4.621 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.559 5.559 8 Si 0.895 3.105 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.210 1.210 12 C 0.036 3.964 13 N -0.385 5.385 14 C 0.433 3.567 15 O -0.469 6.469 16 N -0.397 5.397 17 C -0.028 4.028 18 C -0.089 4.089 19 C -0.181 4.181 20 C -0.190 4.190 21 C 0.092 3.908 22 H 0.111 0.889 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.124 4.124 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.226 0.774 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.886 4.383 -21.624 22.082 hybrid contribution -0.166 0.275 -1.538 1.571 sum -1.052 4.659 -23.162 23.649 Atomic orbital electron populations 1.22042 0.98436 0.98776 1.00664 1.18529 0.92154 0.92889 0.92331 1.22074 0.98732 0.98144 1.01545 1.21807 1.36711 1.12393 0.91177 0.92913 1.25665 0.95549 0.95687 1.00913 1.70812 1.31690 1.18251 1.35161 0.83583 0.76003 0.75451 0.75459 1.21533 1.21475 1.21020 1.21500 0.97961 0.95265 0.81637 1.45422 1.55797 1.32993 1.04266 1.15394 0.79502 0.82449 0.79337 1.90901 1.42874 1.27850 1.85323 1.48685 1.55406 1.31054 1.04601 1.23323 0.93926 0.90242 0.95271 1.22245 0.94295 0.96842 0.95490 1.21496 0.95468 0.98521 1.02638 1.21659 1.02266 0.98414 0.96709 1.21128 0.91512 0.99063 0.79083 0.88913 1.19833 0.97109 0.96059 0.95139 1.20902 0.96603 0.99727 0.95191 1.21094 0.96788 0.95946 1.00014 1.21157 0.99923 0.97455 0.95408 1.21167 0.96608 1.00051 0.95912 1.21173 0.96526 0.95014 0.99671 0.91299 0.96580 0.94549 0.94718 0.96745 0.90326 0.90350 0.92770 0.92825 0.77425 0.90590 0.89610 0.91728 0.91929 0.91868 0.91869 0.91961 0.91977 0.85978 0.86048 0.86212 0.86074 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 7.85 37.15 0.29 -2.86 16 2 C 0.04 0.99 0.50 -155.66 -0.08 0.91 16 3 C -0.15 -3.34 7.82 37.16 0.29 -3.05 16 4 C -0.58 -15.74 8.01 -34.44 -0.28 -16.02 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.03 0.69 5.04 -17.82 -0.09 0.60 16 7 N -0.92 -26.00 11.99 55.43 0.66 -25.34 16 8 Si 1.07 24.71 29.90 -169.99 -5.08 19.63 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.16 3.54 4.44 -4.04 -0.02 3.52 16 13 N -0.73 -13.77 5.06 -65.22 -0.33 -14.10 16 14 C 0.73 13.93 8.79 -86.92 -0.76 13.16 16 15 O -0.59 -13.78 17.12 5.28 0.09 -13.69 16 16 N -0.66 -9.45 2.67 -184.27 -0.49 -9.94 16 17 C 0.10 1.01 6.68 -8.49 -0.06 0.96 16 18 C -0.09 -0.79 1.50 -153.85 -0.23 -1.03 16 19 C -0.12 -1.07 9.22 37.16 0.34 -0.73 16 20 C -0.13 -0.95 8.61 37.15 0.32 -0.63 16 21 C 0.20 2.35 4.13 -73.39 -0.30 2.05 16 22 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 23 C -0.08 -0.91 3.70 -104.63 -0.39 -1.30 16 24 C -0.11 -1.05 9.74 -39.58 -0.39 -1.44 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.11 -1.24 8.10 -39.58 -0.32 -1.56 16 29 H 0.07 1.69 5.41 -51.93 -0.28 1.41 16 30 H 0.02 0.30 7.04 -51.93 -0.37 -0.06 16 31 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.01 0.27 7.07 -51.93 -0.37 -0.09 16 34 H 0.08 1.98 5.09 -51.93 -0.26 1.72 16 35 H 0.28 7.68 3.78 -40.82 -0.15 7.53 16 36 H 0.05 1.29 8.14 -51.92 -0.42 0.86 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.39 6.66 6.17 -40.82 -0.25 6.41 16 39 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.09 0.83 5.47 -51.93 -0.28 0.54 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.69 7.94 -51.93 -0.41 0.27 16 44 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 49 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 50 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 51 H 0.12 1.51 5.51 -52.49 -0.29 1.22 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -31.97 393.76 -10.21 -42.17 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.13 Total: 7.40 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.86 Total: -12.07 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.16 Total: -49.38 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.97 -10.21 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds