Wall clock time and date at job start Tue Mar 31 2020 16:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47313 * 2 1 4 4 C 1.50706 * 109.47143 * 119.99510 * 2 1 3 5 5 H 1.07999 * 120.00136 * 117.34637 * 4 2 1 6 6 C 1.37878 * 119.99882 * 297.35352 * 4 2 1 7 7 N 1.31513 * 120.00044 * 0.25078 * 6 4 2 8 8 Si 1.86802 * 119.99842 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47074 * 270.27186 * 8 6 4 10 10 H 1.48499 * 109.47115 * 30.26677 * 8 6 4 11 11 H 1.48501 * 109.47323 * 150.27249 * 8 6 4 12 12 C 1.53000 * 109.47176 * 239.99411 * 2 1 3 13 13 N 1.46500 * 109.47003 * 60.00624 * 12 2 1 14 14 C 1.34773 * 120.00182 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99758 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00198 * 179.97438 * 14 13 12 17 17 C 1.47065 * 136.05601 * 0.02562 * 16 14 13 18 18 C 1.53505 * 87.98427 * 207.07972 * 17 16 14 19 19 C 1.53001 * 114.20575 * 87.51457 * 18 17 16 20 20 C 1.52994 * 114.20868 * 220.14377 * 18 17 16 21 21 C 1.47070 * 136.05585 * 179.62493 * 16 14 13 22 22 H 1.09004 * 113.46677 * 38.14145 * 21 16 14 23 23 C 1.50692 * 113.46879 * 267.69916 * 21 16 14 24 24 C 1.38232 * 120.00000 * 159.18981 * 23 21 16 25 25 C 1.38236 * 119.99899 * 179.80647 * 24 23 21 26 26 C 1.38233 * 120.00106 * 0.42448 * 25 24 23 27 27 C 1.38236 * 120.00278 * 359.80768 * 26 25 24 28 28 C 1.38235 * 119.99369 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47324 * 288.39586 * 1 2 3 30 30 H 1.09005 * 109.47322 * 48.39022 * 1 2 3 31 31 H 1.08992 * 109.47574 * 168.39363 * 1 2 3 32 32 H 1.09004 * 109.47314 * 192.72244 * 3 2 1 33 33 H 1.09003 * 109.47008 * 312.71800 * 3 2 1 34 34 H 1.08997 * 109.47315 * 72.72130 * 3 2 1 35 35 H 0.96992 * 120.00043 * 6.63493 * 7 6 4 36 36 H 1.09008 * 109.46877 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.47033 * 300.00279 * 12 2 1 38 38 H 0.97003 * 119.99998 * 359.97438 * 13 12 2 39 39 H 1.09001 * 113.46490 * 321.85378 * 17 16 14 40 40 H 1.08997 * 113.47039 * 92.24701 * 17 16 14 41 41 H 1.08997 * 109.46736 * 79.50678 * 19 18 17 42 42 H 1.08997 * 109.47207 * 199.50500 * 19 18 17 43 43 H 1.08999 * 109.47637 * 319.50885 * 19 18 17 44 44 H 1.09001 * 109.46792 * 40.49454 * 20 18 17 45 45 H 1.08998 * 109.47219 * 160.49394 * 20 18 17 46 46 H 1.09000 * 109.47211 * 280.49858 * 20 18 17 47 47 H 1.07998 * 120.00340 * 0.02562 * 24 23 21 48 48 H 1.08009 * 119.99992 * 180.21163 * 25 24 23 49 49 H 1.08004 * 120.00058 * 179.78841 * 26 25 24 50 50 H 1.07990 * 120.00151 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99846 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6174 -1.6128 1.1322 6 6 1.7448 -0.2082 2.4821 7 7 1.0281 0.8879 2.6020 8 14 2.3669 -1.0890 4.0074 9 1 1.3619 -2.0909 4.4448 10 1 3.6464 -1.7751 3.6955 11 1 2.5868 -0.1014 5.0943 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 1.8769 -0.4916 -3.6694 15 8 2.5759 -1.4803 -3.7809 16 7 1.4273 0.1434 -4.7699 17 6 0.5936 1.3232 -5.0454 18 6 0.2007 0.6674 -6.3765 19 6 -1.0071 -0.2672 -6.2831 20 6 0.1237 1.6390 -7.5559 21 6 1.5604 -0.0344 -6.2238 22 1 1.5493 -1.0786 -6.5362 23 6 2.7063 0.7411 -6.8208 24 6 3.2309 0.3673 -8.0438 25 6 4.2795 1.0812 -8.5934 26 6 4.8092 2.1633 -7.9157 27 6 4.2877 2.5342 -6.6904 28 6 3.2369 1.8225 -6.1425 29 1 -0.3634 0.3243 0.9751 30 1 -0.3634 0.6824 -0.7684 31 1 -0.3634 -1.0066 -0.2067 32 1 3.1062 1.4509 -0.2263 33 1 1.5038 2.0174 -0.7551 34 1 1.8734 1.8868 0.9813 35 1 0.6210 1.2894 1.8185 36 1 3.1300 -0.7209 -1.2493 37 1 1.6766 -1.7490 -1.2491 38 1 0.9938 0.7577 -2.3565 39 1 -0.2414 1.4356 -4.3538 40 1 1.1676 2.2419 -5.1659 41 1 -1.9235 0.3229 -6.2782 42 1 -1.0129 -0.9402 -7.1404 43 1 -0.9454 -0.8500 -5.3640 44 1 0.9509 2.3464 -7.4984 45 1 0.1865 1.0816 -8.4905 46 1 -0.8212 2.1811 -7.5189 47 1 2.8194 -0.4801 -8.5718 48 1 4.6872 0.7912 -9.5506 49 1 5.6306 2.7189 -8.3435 50 1 4.7018 3.3794 -6.1608 51 1 2.8298 2.1119 -5.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:35 Heat of formation + Delta-G solvation = 21.084539 kcal Electronic energy + Delta-G solvation = -29298.398100 eV Core-core repulsion = 25584.573717 eV Total energy + Delta-G solvation = -3713.824383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51604 -40.40779 -39.18331 -38.42840 -35.27721 -33.58759 -32.51721 -32.10552 -31.73335 -28.32335 -28.25319 -27.90348 -27.40489 -27.11665 -25.63635 -23.43957 -22.66236 -21.56392 -20.79277 -19.68075 -19.40026 -18.36232 -17.66621 -17.43063 -16.73088 -16.22275 -16.09066 -15.79119 -15.68194 -15.58577 -15.26956 -15.01998 -14.62189 -14.58437 -14.40863 -14.33721 -13.93172 -13.53184 -13.39356 -13.33202 -13.14724 -13.07467 -12.80927 -12.77356 -12.56543 -12.46528 -12.42207 -12.27008 -11.93423 -11.91882 -11.88128 -11.75322 -11.43915 -11.38392 -11.18635 -10.45945 -10.38023 -10.27565 -9.85839 -9.67990 -9.53435 -8.40408 -6.27165 0.33797 0.47254 1.42990 1.55948 1.61601 1.80329 2.07183 2.58279 2.75660 2.99237 3.16647 3.22900 3.58496 3.85807 3.90923 4.03113 4.11214 4.14226 4.22019 4.25261 4.29927 4.33734 4.42810 4.47107 4.58526 4.68212 4.71930 4.75411 4.78552 4.79325 4.83262 4.88166 4.94320 5.01021 5.01194 5.05480 5.09682 5.12479 5.13147 5.17668 5.29376 5.42245 5.46420 5.54972 5.59734 5.61507 5.62054 5.80002 6.07436 6.13702 6.22260 6.28553 6.72025 6.98931 7.48070 7.51878 8.87462 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002876 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.854402 B = 9733.205667 C =10361.042485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.038 3.962 3 C -0.136 4.136 4 C -0.603 4.603 5 H 0.036 0.964 6 C -0.014 4.014 7 N -0.937 5.937 8 Si 1.105 2.895 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.178 3.822 13 N -0.723 5.723 14 C 0.726 3.274 15 O -0.642 6.642 16 N -0.658 5.658 17 C 0.092 3.908 18 C -0.067 4.067 19 C -0.123 4.123 20 C -0.126 4.126 21 C 0.189 3.811 22 H 0.080 0.920 23 C -0.092 4.092 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.125 4.125 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.279 0.721 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.403 0.597 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.137 0.863 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.132 0.868 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 6.421 -25.808 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.037 3.963 3 C -0.194 4.194 4 C -0.641 4.641 5 H 0.055 0.945 6 C -0.213 4.213 7 N -0.578 5.578 8 Si 0.929 3.071 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.054 3.946 13 N -0.377 5.377 14 C 0.429 3.571 15 O -0.524 6.524 16 N -0.396 5.396 17 C -0.030 4.030 18 C -0.068 4.068 19 C -0.180 4.180 20 C -0.183 4.183 21 C 0.085 3.915 22 H 0.098 0.902 23 C -0.094 4.094 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.148 4.148 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.239 0.761 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.155 0.845 48 H 0.166 0.834 49 H 0.161 0.839 50 H 0.150 0.850 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.551 5.694 -23.996 24.711 hybrid contribution 0.051 -0.097 -0.949 0.955 sum -1.500 5.597 -24.944 25.608 Atomic orbital electron populations 1.21879 0.97216 0.99282 1.00438 1.18517 0.93034 0.93183 0.91574 1.21911 0.98676 0.97638 1.01146 1.22114 1.36768 1.12275 0.92982 0.94530 1.26753 0.95360 0.95779 1.03457 1.70869 1.32562 1.18970 1.35380 0.83063 0.76182 0.74933 0.72899 1.20318 1.20675 1.20775 1.21013 0.96452 0.94493 0.82664 1.45079 1.56011 1.33086 1.03552 1.15520 0.79150 0.82249 0.80147 1.90853 1.45139 1.30224 1.86217 1.48706 1.54613 1.31758 1.04487 1.23627 0.93657 0.89419 0.96283 1.22184 0.92687 0.96476 0.95463 1.21516 0.96060 0.98641 1.01802 1.21622 1.03004 0.97842 0.95842 1.21432 0.93787 0.99023 0.77289 0.90237 1.19822 0.97377 0.96229 0.95949 1.21151 0.96858 1.00267 0.94827 1.21446 0.96067 0.95359 1.00884 1.21492 1.00218 0.97546 0.94885 1.21383 0.96384 1.00387 0.96630 1.21182 0.97630 0.95904 0.99582 0.93451 0.93395 0.94948 0.95436 0.93596 0.92610 0.90531 0.94991 0.94718 0.76144 0.89644 0.88355 0.89708 0.90782 0.94490 0.92347 0.90962 0.90216 0.84477 0.83431 0.83872 0.85028 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 7.85 71.98 0.57 -5.21 16 2 C 0.04 1.80 0.50 -52.93 -0.03 1.77 16 3 C -0.14 -6.14 7.82 71.98 0.56 -5.58 16 4 C -0.60 -33.30 8.01 25.60 0.21 -33.10 16 5 H 0.04 2.08 7.74 -2.91 -0.02 2.06 16 6 C -0.01 -0.77 5.04 84.66 0.43 -0.34 16 7 N -0.94 -53.33 11.99 21.45 0.26 -53.08 16 8 Si 1.11 50.10 29.90 68.60 2.05 52.15 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.18 8.15 4.44 86.38 0.38 8.53 16 13 N -0.72 -27.41 5.06 -478.53 -2.42 -29.83 16 14 C 0.73 28.29 8.79 179.06 1.57 29.86 16 15 O -0.64 -31.12 17.12 -4.01 -0.07 -31.19 16 16 N -0.66 -18.80 2.67 -855.17 -2.29 -21.09 16 17 C 0.09 1.81 6.68 83.19 0.56 2.36 16 18 C -0.07 -1.09 1.50 -51.75 -0.08 -1.17 16 19 C -0.12 -1.89 9.22 71.98 0.66 -1.22 16 20 C -0.13 -1.42 8.61 71.98 0.62 -0.80 16 21 C 0.19 4.40 4.13 41.14 0.17 4.57 16 22 H 0.08 2.03 8.13 -2.38 -0.02 2.01 16 23 C -0.09 -2.02 3.70 -19.87 -0.07 -2.10 16 24 C -0.11 -2.04 9.74 22.27 0.22 -1.83 16 25 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 26 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 28 C -0.12 -2.84 8.10 22.27 0.18 -2.66 16 29 H 0.05 2.32 5.41 -2.39 -0.01 2.31 16 30 H 0.05 1.77 7.04 -2.38 -0.02 1.76 16 31 H 0.03 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.05 1.74 7.07 -2.39 -0.02 1.72 16 34 H 0.06 2.81 5.09 -2.39 -0.01 2.80 16 35 H 0.28 15.40 3.78 -92.71 -0.35 15.05 16 36 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.40 13.27 6.17 -92.71 -0.57 12.70 16 39 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 40 H 0.10 1.74 5.47 -2.39 -0.01 1.73 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.04 0.77 7.94 -2.39 -0.02 0.75 16 44 H 0.06 0.76 6.71 -2.39 -0.02 0.74 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 48 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 49 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 50 H 0.13 2.16 8.06 -2.92 -0.02 2.14 16 51 H 0.11 2.71 5.51 -2.91 -0.02 2.70 16 Total: -1.00 -71.29 393.76 4.92 -66.38 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.77 Total: 29.30 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 6.62 Total: -12.64 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -4.45 Total: -104.00 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.07 Total: -31.19 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -71.29 4.92 -66.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.461 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds