Wall clock time and date at job start Tue Mar 31 2020 16:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.27280 * 2 1 4 4 C 1.54597 * 110.30661 * 237.80926 * 2 1 3 5 5 C 1.54939 * 102.92127 * 263.03792 * 4 2 1 6 6 N 1.48534 * 103.22670 * 322.58825 * 5 4 2 7 7 C 1.46903 * 110.99998 * 159.71713 * 6 5 4 8 8 C 1.50701 * 109.46663 * 52.60290 * 7 6 5 9 9 O 1.21279 * 120.00321 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99636 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99802 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47157 * 35.00051 * 11 10 8 13 13 C 1.53005 * 109.47037 * 155.00168 * 11 10 8 14 14 C 1.50695 * 109.46948 * 295.00272 * 13 11 10 15 15 H 1.07996 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.37883 * 119.99585 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99617 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47260 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46795 * 120.00235 * 18 16 14 21 21 H 1.48498 * 109.47234 * 239.99754 * 18 16 14 22 22 C 1.50702 * 109.47629 * 275.00358 * 11 10 8 23 23 C 1.38234 * 120.00271 * 139.99738 * 22 11 10 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 319.97866 * 22 11 10 28 28 C 1.47905 * 105.81879 * 39.20492 * 6 5 4 29 29 H 1.08999 * 109.47213 * 297.90756 * 1 2 3 30 30 H 1.09004 * 109.47339 * 57.90666 * 1 2 3 31 31 H 1.08997 * 109.47372 * 177.90732 * 1 2 3 32 32 H 1.09000 * 109.47258 * 182.08758 * 3 2 1 33 33 H 1.09007 * 109.47589 * 302.09441 * 3 2 1 34 34 H 1.09006 * 109.47221 * 62.09514 * 3 2 1 35 35 H 1.08996 * 110.72447 * 21.40054 * 4 2 1 36 36 H 1.08998 * 110.72117 * 144.50403 * 4 2 1 37 37 H 1.08993 * 110.66884 * 204.14842 * 5 4 2 38 38 H 1.09003 * 110.66418 * 81.01845 * 5 4 2 39 39 H 1.08992 * 109.46897 * 292.60642 * 7 6 5 40 40 H 1.08998 * 109.47035 * 172.59964 * 7 6 5 41 41 H 0.96998 * 120.00356 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.47096 * 55.00279 * 13 11 10 43 43 H 1.09000 * 109.46911 * 174.99918 * 13 11 10 44 44 H 0.97006 * 119.99881 * 179.97438 * 17 16 14 45 45 H 1.08001 * 119.99769 * 359.97438 * 23 22 11 46 46 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 48 48 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00489 * 0.02562 * 27 22 11 50 50 H 1.08999 * 109.91416 * 94.02408 * 28 6 5 51 51 H 1.09004 * 109.91803 * 215.11716 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0665 -0.7724 -1.2270 5 6 2.3584 -2.1803 -0.6496 6 7 2.8809 -1.8884 0.7098 7 6 2.7668 -3.0653 1.5815 8 6 3.4045 -4.2531 0.9078 9 8 3.9042 -4.1312 -0.1905 10 7 3.4193 -5.4507 1.5259 11 6 4.0386 -6.6054 0.8707 12 1 4.9035 -6.2758 0.2949 13 6 4.4859 -7.6140 1.9308 14 6 5.5740 -7.0044 2.7766 15 1 5.9130 -5.9984 2.5778 16 6 6.1368 -7.7310 3.8045 17 7 5.7237 -8.9557 4.0470 18 14 7.4860 -6.9756 4.8525 19 1 7.7671 -5.5965 4.3790 20 1 7.0456 -6.9317 6.2701 21 1 8.7175 -7.7980 4.7421 22 6 3.0395 -7.2556 -0.0513 23 6 3.4437 -7.7274 -1.2862 24 6 2.5273 -8.3243 -2.1317 25 6 1.2069 -8.4498 -1.7421 26 6 0.8030 -7.9789 -0.5068 27 6 1.7191 -7.3804 0.3380 28 6 2.0645 -0.7672 1.2234 29 1 -0.3633 0.4810 0.9081 30 1 -0.3634 0.5460 -0.8706 31 1 -0.3634 -1.0269 -0.0375 32 1 3.1494 1.4202 -0.0374 33 1 1.6738 1.9653 -0.8706 34 1 1.7348 1.9427 0.9082 35 1 1.3102 -0.8258 -2.0101 36 1 2.9788 -0.3107 -1.6047 37 1 3.1104 -2.6935 -1.2489 38 1 1.4432 -2.7696 -0.5917 39 1 1.7145 -3.2766 1.7707 40 1 3.2735 -2.8682 2.5262 41 1 3.0193 -5.5482 2.4041 42 1 3.6379 -7.8763 2.5634 43 1 4.8655 -8.5110 1.4416 44 1 6.1199 -9.4670 4.7699 45 1 4.4753 -7.6298 -1.5904 46 1 2.8430 -8.6933 -3.0963 47 1 0.4900 -8.9121 -2.4045 48 1 -0.2286 -8.0765 -0.2026 49 1 1.4033 -7.0117 1.3027 50 1 1.2324 -1.1532 1.8123 51 1 2.6804 -0.1101 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594328571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:15 Heat of formation + Delta-G solvation = -17.897077 kcal Electronic energy + Delta-G solvation = -28832.866201 eV Core-core repulsion = 25117.351448 eV Total energy + Delta-G solvation = -3715.514752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10522 -39.20870 -38.16650 -35.28287 -34.03430 -32.74650 -31.29211 -30.49214 -29.88952 -28.85723 -27.59225 -27.40693 -25.04758 -24.13167 -22.30652 -21.97616 -21.56121 -20.17998 -19.73186 -19.13046 -16.97729 -16.57927 -16.18172 -15.93065 -15.47978 -15.05232 -14.98602 -14.64591 -14.51774 -14.19973 -13.94034 -13.72164 -13.52864 -13.26319 -13.08708 -12.98522 -12.63146 -12.56907 -12.41698 -12.12177 -11.83843 -11.80537 -11.60691 -11.53862 -11.31727 -11.13914 -10.95724 -10.81110 -10.75098 -10.70405 -10.60829 -10.51852 -10.44549 -9.78183 -9.29114 -9.13142 -8.56053 -8.47187 -8.41859 -8.29240 -8.18515 -6.09515 -4.12814 1.76776 1.78834 3.13286 3.26411 3.35196 3.40204 3.55866 4.14110 4.24583 4.40002 4.44165 4.57611 4.70523 5.10405 5.19561 5.24143 5.25962 5.27174 5.28329 5.29562 5.33345 5.38966 5.41944 5.43815 5.54002 5.55031 5.58673 5.72207 5.74525 5.82143 5.89504 5.90525 5.93224 6.02613 6.11574 6.17063 6.22550 6.34779 6.36625 6.42772 6.58323 6.83178 6.84266 6.92926 6.95559 7.00247 7.11582 7.39249 7.49193 7.62803 7.87601 8.14793 8.26038 8.80794 8.93699 9.52519 11.01030 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.003856 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.747950 B = 7259.474372 C = 9737.409352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.117 4.117 5 C 0.035 3.965 6 N -0.498 5.498 7 C 0.026 3.974 8 C 0.512 3.488 9 O -0.535 6.535 10 N -0.701 5.701 11 C 0.186 3.814 12 H 0.087 0.913 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.125 4.125 27 C -0.109 4.109 28 C 0.043 3.957 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.034 0.966 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.400 0.600 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.044 0.956 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 12.780 -7.953 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.155 4.155 5 C -0.092 4.092 6 N -0.222 5.222 7 C -0.105 4.105 8 C 0.297 3.703 9 O -0.413 6.413 10 N -0.351 5.351 11 C 0.081 3.919 12 H 0.105 0.895 13 C -0.013 4.013 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.234 0.766 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.062 0.938 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.607 12.839 -8.616 19.334 hybrid contribution -0.369 -0.136 1.329 1.386 sum -11.976 12.704 -7.286 18.918 Atomic orbital electron populations 1.21900 0.94293 1.01647 1.01687 1.21413 0.95221 0.95819 0.95410 1.21843 1.01318 0.94668 1.01368 1.22679 1.00881 0.95593 0.96335 1.23482 0.99150 0.95969 0.90611 1.64665 1.50831 1.04436 1.02257 1.22247 0.99921 0.90310 0.98072 1.20292 0.80020 0.83915 0.86080 1.90586 1.46056 1.84271 1.20353 1.45943 1.59045 1.08644 1.21419 1.20226 0.91953 0.85806 0.93886 0.89511 1.19389 0.96771 0.93201 0.91975 1.21182 1.19550 1.00550 1.14461 0.92257 1.24992 0.96940 0.94801 0.97436 1.69969 1.42525 1.09668 1.30964 0.86546 0.81950 0.79517 0.80096 1.19642 1.21051 1.20983 1.20562 0.94937 0.96867 0.94703 1.21023 0.99644 0.98395 0.93593 1.21042 0.93567 0.99981 0.99452 1.20989 0.96044 1.01545 0.96774 1.21037 0.99095 0.99525 0.94699 1.20899 0.93072 0.99439 0.99301 1.23081 0.95535 0.93527 0.96398 0.92632 0.92497 0.92810 0.92078 0.92771 0.92810 0.91413 0.90713 0.86876 0.94765 0.92320 0.87797 0.76584 0.95799 0.94829 0.92936 0.86178 0.86618 0.86874 0.86816 0.86669 0.93800 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.21 37.16 0.30 -0.84 16 2 C -0.08 -0.75 0.97 -153.16 -0.15 -0.90 16 3 C -0.13 -1.13 8.24 37.16 0.31 -0.83 16 4 C -0.12 -1.29 6.16 -24.87 -0.15 -1.44 16 5 C 0.03 0.48 5.30 -1.90 -0.01 0.47 16 6 N -0.50 -6.91 5.26 -231.89 -1.22 -8.13 16 7 C 0.03 0.36 5.52 -4.97 -0.03 0.33 16 8 C 0.51 8.89 7.50 -10.98 -0.08 8.81 16 9 O -0.54 -10.88 13.18 5.56 0.07 -10.81 16 10 N -0.70 -12.38 4.03 -54.93 -0.22 -12.60 16 11 C 0.19 3.74 2.12 -69.08 -0.15 3.59 16 12 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 13 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 14 C -0.52 -13.69 8.84 -34.44 -0.30 -14.00 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C -0.07 -1.27 4.91 -104.62 -0.51 -1.79 16 23 C -0.11 -1.87 9.67 -39.59 -0.38 -2.25 16 24 C -0.12 -1.83 10.05 -39.59 -0.40 -2.23 16 25 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 28 C 0.04 0.47 6.02 -2.76 -0.02 0.45 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.11 1.89 5.97 -51.93 -0.31 1.58 16 38 H 0.03 0.48 8.02 -51.93 -0.42 0.06 16 39 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.40 6.45 8.60 -40.82 -0.35 6.10 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 46 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.12 1.79 7.72 -52.49 -0.41 1.38 16 50 H 0.04 0.45 7.11 -51.93 -0.37 0.08 16 51 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -30.50 407.04 -11.37 -41.87 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.89 Total: 7.70 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.96 Total: -15.37 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.70 Total: -45.54 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.50 -11.37 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594328571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.972 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds