Wall clock time and date at job start Tue Mar 31 2020 16:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.27280 * 2 1 4 4 C 1.54597 * 110.30661 * 237.80926 * 2 1 3 5 5 C 1.54939 * 102.92127 * 263.03792 * 4 2 1 6 6 N 1.48534 * 103.22670 * 322.58825 * 5 4 2 7 7 C 1.46903 * 110.99998 * 159.71713 * 6 5 4 8 8 C 1.50701 * 109.46663 * 52.60290 * 7 6 5 9 9 O 1.21279 * 120.00321 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99636 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99802 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47157 * 35.00051 * 11 10 8 13 13 C 1.53005 * 109.47037 * 155.00168 * 11 10 8 14 14 C 1.50695 * 109.46948 * 295.00272 * 13 11 10 15 15 H 1.07996 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.37883 * 119.99585 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99617 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47260 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46795 * 120.00235 * 18 16 14 21 21 H 1.48498 * 109.47234 * 239.99754 * 18 16 14 22 22 C 1.50702 * 109.47629 * 275.00358 * 11 10 8 23 23 C 1.38234 * 120.00271 * 139.99738 * 22 11 10 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 319.97866 * 22 11 10 28 28 C 1.47905 * 105.81879 * 39.20492 * 6 5 4 29 29 H 1.08999 * 109.47213 * 297.90756 * 1 2 3 30 30 H 1.09004 * 109.47339 * 57.90666 * 1 2 3 31 31 H 1.08997 * 109.47372 * 177.90732 * 1 2 3 32 32 H 1.09000 * 109.47258 * 182.08758 * 3 2 1 33 33 H 1.09007 * 109.47589 * 302.09441 * 3 2 1 34 34 H 1.09006 * 109.47221 * 62.09514 * 3 2 1 35 35 H 1.08996 * 110.72447 * 21.40054 * 4 2 1 36 36 H 1.08998 * 110.72117 * 144.50403 * 4 2 1 37 37 H 1.08993 * 110.66884 * 204.14842 * 5 4 2 38 38 H 1.09003 * 110.66418 * 81.01845 * 5 4 2 39 39 H 1.08992 * 109.46897 * 292.60642 * 7 6 5 40 40 H 1.08998 * 109.47035 * 172.59964 * 7 6 5 41 41 H 0.96998 * 120.00356 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.47096 * 55.00279 * 13 11 10 43 43 H 1.09000 * 109.46911 * 174.99918 * 13 11 10 44 44 H 0.97006 * 119.99881 * 179.97438 * 17 16 14 45 45 H 1.08001 * 119.99769 * 359.97438 * 23 22 11 46 46 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 48 48 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00489 * 0.02562 * 27 22 11 50 50 H 1.08999 * 109.91416 * 94.02408 * 28 6 5 51 51 H 1.09004 * 109.91803 * 215.11716 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0665 -0.7724 -1.2270 5 6 2.3584 -2.1803 -0.6496 6 7 2.8809 -1.8884 0.7098 7 6 2.7668 -3.0653 1.5815 8 6 3.4045 -4.2531 0.9078 9 8 3.9042 -4.1312 -0.1905 10 7 3.4193 -5.4507 1.5259 11 6 4.0386 -6.6054 0.8707 12 1 4.9035 -6.2758 0.2949 13 6 4.4859 -7.6140 1.9308 14 6 5.5740 -7.0044 2.7766 15 1 5.9130 -5.9984 2.5778 16 6 6.1368 -7.7310 3.8045 17 7 5.7237 -8.9557 4.0470 18 14 7.4860 -6.9756 4.8525 19 1 7.7671 -5.5965 4.3790 20 1 7.0456 -6.9317 6.2701 21 1 8.7175 -7.7980 4.7421 22 6 3.0395 -7.2556 -0.0513 23 6 3.4437 -7.7274 -1.2862 24 6 2.5273 -8.3243 -2.1317 25 6 1.2069 -8.4498 -1.7421 26 6 0.8030 -7.9789 -0.5068 27 6 1.7191 -7.3804 0.3380 28 6 2.0645 -0.7672 1.2234 29 1 -0.3633 0.4810 0.9081 30 1 -0.3634 0.5460 -0.8706 31 1 -0.3634 -1.0269 -0.0375 32 1 3.1494 1.4202 -0.0374 33 1 1.6738 1.9653 -0.8706 34 1 1.7348 1.9427 0.9082 35 1 1.3102 -0.8258 -2.0101 36 1 2.9788 -0.3107 -1.6047 37 1 3.1104 -2.6935 -1.2489 38 1 1.4432 -2.7696 -0.5917 39 1 1.7145 -3.2766 1.7707 40 1 3.2735 -2.8682 2.5262 41 1 3.0193 -5.5482 2.4041 42 1 3.6379 -7.8763 2.5634 43 1 4.8655 -8.5110 1.4416 44 1 6.1199 -9.4670 4.7699 45 1 4.4753 -7.6298 -1.5904 46 1 2.8430 -8.6933 -3.0963 47 1 0.4900 -8.9121 -2.4045 48 1 -0.2286 -8.0765 -0.2026 49 1 1.4033 -7.0117 1.3027 50 1 1.2324 -1.1532 1.8123 51 1 2.6804 -0.1101 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594328571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:14 Heat of formation + Delta-G solvation = -35.349149 kcal Electronic energy + Delta-G solvation = -28833.622979 eV Core-core repulsion = 25117.351448 eV Total energy + Delta-G solvation = -3716.271531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34734 -40.36624 -39.39293 -36.82374 -35.05376 -34.72664 -32.70003 -31.71912 -30.90477 -30.51656 -28.62567 -28.15595 -26.65601 -25.22081 -23.80809 -23.39243 -22.66527 -21.53159 -21.15747 -19.98319 -18.69350 -17.94064 -17.71336 -17.22558 -16.67194 -16.43809 -16.21588 -16.18282 -15.84418 -15.22648 -15.08964 -14.67698 -14.54909 -14.44353 -14.33551 -14.20173 -14.05152 -13.87176 -13.68365 -13.44620 -13.33632 -12.94554 -12.80616 -12.64344 -12.57899 -12.47745 -12.39598 -12.27955 -12.13698 -11.88570 -11.60293 -11.59421 -11.49398 -11.45518 -11.28609 -10.65389 -10.46852 -9.95408 -9.76534 -9.52877 -9.34693 -8.21157 -6.31173 0.50380 0.54770 1.37851 1.40832 1.52530 1.74828 2.24422 2.39613 2.95580 3.10410 3.14173 3.60072 3.69951 3.91208 3.93542 4.02136 4.03194 4.19681 4.25590 4.31143 4.32615 4.38758 4.43358 4.46781 4.51377 4.65069 4.66831 4.75855 4.78427 4.80453 4.84535 4.90481 4.97002 5.09887 5.11501 5.12928 5.18497 5.19707 5.30056 5.32824 5.38379 5.43573 5.50241 5.60285 5.62279 5.63852 5.77598 5.87515 5.93941 6.01863 6.15242 6.19878 6.74141 6.81894 7.37664 7.41334 8.89758 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.003856 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.747950 B = 7259.474372 C = 9737.409352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.112 4.112 5 C 0.039 3.961 6 N -0.518 5.518 7 C 0.034 3.966 8 C 0.508 3.492 9 O -0.569 6.569 10 N -0.698 5.698 11 C 0.203 3.797 12 H 0.055 0.945 13 C 0.039 3.961 14 C -0.528 4.528 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.282 1.282 22 C -0.095 4.095 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.121 4.121 28 C 0.042 3.958 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.408 0.592 42 H 0.012 0.988 43 H 0.001 0.999 44 H 0.264 0.736 45 H 0.110 0.890 46 H 0.143 0.857 47 H 0.151 0.849 48 H 0.146 0.854 49 H 0.121 0.879 50 H 0.056 0.944 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 14.180 -7.818 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.150 4.150 5 C -0.089 4.089 6 N -0.243 5.243 7 C -0.097 4.097 8 C 0.295 3.705 9 O -0.448 6.448 10 N -0.348 5.348 11 C 0.097 3.903 12 H 0.073 0.927 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.208 1.208 22 C -0.096 4.096 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.086 4.086 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.243 0.757 42 H 0.031 0.969 43 H 0.020 0.980 44 H 0.073 0.927 45 H 0.129 0.871 46 H 0.161 0.839 47 H 0.169 0.831 48 H 0.164 0.836 49 H 0.139 0.861 50 H 0.074 0.926 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.821 14.256 -8.468 21.586 hybrid contribution 0.303 -0.615 1.211 1.391 sum -13.517 13.641 -7.258 20.530 Atomic orbital electron populations 1.21871 0.92904 1.01553 1.02812 1.21422 0.96254 0.96066 0.93740 1.21813 1.00590 0.93961 1.02507 1.22651 1.01093 0.93960 0.97335 1.23283 0.97662 0.97297 0.90626 1.64627 1.52285 1.05063 1.02350 1.22216 1.00975 0.88664 0.97824 1.20983 0.79419 0.84422 0.85706 1.90590 1.47506 1.84772 1.21959 1.45847 1.58835 1.08381 1.21714 1.19670 0.92083 0.85733 0.92785 0.92699 1.19122 0.95618 0.92901 0.92225 1.21424 1.20109 1.00300 1.14772 0.92900 1.25774 0.99120 0.95171 0.98698 1.70076 1.43887 1.10914 1.31732 0.85528 0.79012 0.78578 0.78691 1.19395 1.19972 1.20821 1.20434 0.95477 0.98599 0.95130 1.21167 1.00084 0.99782 0.94208 1.21377 0.93733 0.98981 1.00026 1.21461 0.96161 1.00170 0.96927 1.21436 1.00190 0.98127 0.94459 1.21059 0.92644 1.00103 1.00151 1.23173 0.95656 0.92612 0.97127 0.91444 0.91488 0.93492 0.93198 0.91748 0.91576 0.90142 0.91426 0.90509 0.95102 0.89831 0.86585 0.75693 0.96933 0.98029 0.92715 0.87146 0.83942 0.83135 0.83609 0.86146 0.92579 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.21 71.98 0.59 -1.27 16 2 C -0.07 -1.28 0.97 -51.31 -0.05 -1.33 16 3 C -0.13 -1.92 8.24 71.98 0.59 -1.33 16 4 C -0.11 -2.39 6.16 31.80 0.20 -2.19 16 5 C 0.04 1.08 5.30 86.65 0.46 1.54 16 6 N -0.52 -14.15 5.26 -887.57 -4.67 -18.82 16 7 C 0.03 0.92 5.52 85.56 0.47 1.39 16 8 C 0.51 18.16 7.50 87.66 0.66 18.82 16 9 O -0.57 -24.39 13.18 -3.03 -0.04 -24.43 16 10 N -0.70 -25.59 4.03 -446.09 -1.80 -27.38 16 11 C 0.20 8.68 2.12 44.25 0.09 8.77 16 12 H 0.05 2.66 7.44 -2.39 -0.02 2.64 16 13 C 0.04 1.95 4.49 29.85 0.13 2.09 16 14 C -0.53 -28.83 8.84 25.60 0.23 -28.60 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.61 5.46 84.66 0.46 1.07 16 17 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 18 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 C -0.10 -3.64 4.91 -19.87 -0.10 -3.74 16 23 C -0.13 -4.82 9.67 22.27 0.22 -4.60 16 24 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 25 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 26 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16 27 C -0.12 -4.01 9.32 22.27 0.21 -3.80 16 28 C 0.04 0.84 6.02 86.44 0.52 1.36 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.84 8.11 -2.39 -0.02 0.82 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 1.48 7.85 -2.39 -0.02 1.46 16 36 H 0.07 1.52 7.85 -2.39 -0.02 1.50 16 37 H 0.08 2.72 5.97 -2.39 -0.01 2.71 16 38 H 0.03 0.86 8.02 -2.39 -0.02 0.84 16 39 H 0.08 1.84 7.81 -2.39 -0.02 1.82 16 40 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.41 13.46 8.60 -92.71 -0.80 12.66 16 42 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 45 H 0.11 4.02 8.04 -2.91 -0.02 3.99 16 46 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 48 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 49 H 0.12 3.72 7.72 -2.91 -0.02 3.70 16 50 H 0.06 0.99 7.11 -2.39 -0.02 0.98 16 51 H 0.08 1.61 7.69 -2.38 -0.02 1.59 16 Total: -1.00 -68.59 407.04 1.25 -67.34 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.10 Total: 32.86 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 5.35 Total: -21.40 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -6.18 Total: -100.08 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.59 1.25 -67.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594328571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.987 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds