Wall clock time and date at job start Tue Mar 31 2020 16:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.27116 * 2 1 4 4 C 1.54781 * 110.15432 * 237.80168 * 2 1 3 5 5 C 1.54937 * 102.83798 * 262.84810 * 4 2 1 6 6 N 1.48531 * 103.37331 * 322.79651 * 5 4 2 7 7 C 1.46908 * 110.99857 * 159.63431 * 6 5 4 8 8 C 1.50705 * 109.46685 * 69.87722 * 7 6 5 9 9 O 1.21284 * 120.00055 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00128 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47197 * 324.99506 * 11 10 8 13 13 C 1.53000 * 109.47164 * 204.99566 * 11 10 8 14 14 C 1.50707 * 109.47141 * 65.00036 * 13 11 10 15 15 H 1.07998 * 119.99561 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00098 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00064 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47243 * 89.99666 * 18 16 14 20 20 H 1.48506 * 109.46906 * 209.99540 * 18 16 14 21 21 H 1.48500 * 109.47184 * 329.99476 * 18 16 14 22 22 C 1.50701 * 109.47702 * 84.99803 * 11 10 8 23 23 C 1.38244 * 119.99651 * 39.72006 * 22 11 10 24 24 C 1.38229 * 119.99371 * 179.79049 * 23 22 11 25 25 C 1.38230 * 120.00704 * 0.44661 * 24 23 22 26 26 C 1.38236 * 119.99655 * 359.81362 * 25 24 23 27 27 C 1.38228 * 120.00427 * 220.00352 * 22 11 10 28 28 C 1.47901 * 105.82310 * 39.12709 * 6 5 4 29 29 H 1.09000 * 109.47025 * 297.90651 * 1 2 3 30 30 H 1.08993 * 109.47188 * 57.91650 * 1 2 3 31 31 H 1.09007 * 109.46831 * 177.91348 * 1 2 3 32 32 H 1.09004 * 109.46893 * 182.09015 * 3 2 1 33 33 H 1.08995 * 109.47387 * 302.08812 * 3 2 1 34 34 H 1.09003 * 109.47552 * 62.08942 * 3 2 1 35 35 H 1.08996 * 110.65506 * 144.56348 * 4 2 1 36 36 H 1.09005 * 110.87400 * 21.22897 * 4 2 1 37 37 H 1.09002 * 110.66811 * 204.28059 * 5 4 2 38 38 H 1.09001 * 110.66542 * 81.31698 * 5 4 2 39 39 H 1.08997 * 109.46891 * 189.87443 * 7 6 5 40 40 H 1.08998 * 109.47004 * 309.88012 * 7 6 5 41 41 H 0.96997 * 119.99624 * 359.97438 * 10 8 7 42 42 H 1.08996 * 109.47538 * 184.99460 * 13 11 10 43 43 H 1.09003 * 109.47434 * 304.99977 * 13 11 10 44 44 H 0.97003 * 119.99930 * 180.02562 * 17 16 14 45 45 H 1.07994 * 119.99975 * 0.02562 * 23 22 11 46 46 H 1.08011 * 119.99593 * 180.27548 * 24 23 22 47 47 H 1.08001 * 120.00660 * 179.83293 * 25 24 23 48 48 H 1.08005 * 119.99769 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.00120 * 359.97438 * 27 22 11 50 50 H 1.09004 * 109.92027 * 94.01264 * 28 6 5 51 51 H 1.08993 * 109.91982 * 215.11956 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0633 -0.7742 -1.2296 5 6 2.3585 -2.1803 -0.6495 6 7 2.8811 -1.8884 0.7098 7 6 2.7669 -3.0653 1.5817 8 6 3.7436 -4.1208 1.1309 9 8 4.4634 -3.9133 0.1771 10 7 3.8164 -5.2958 1.7871 11 6 4.7662 -6.3216 1.3493 12 1 4.8549 -6.2949 0.2632 13 6 4.2657 -7.6998 1.7862 14 6 2.9781 -8.0170 1.0702 15 1 2.5586 -7.3064 0.3734 16 6 2.3352 -9.2138 1.3053 17 7 2.8458 -10.0789 2.1541 18 14 0.7388 -9.6065 0.4182 19 1 1.0402 -10.3041 -0.8577 20 1 -0.1009 -10.4820 1.2747 21 1 0.0082 -8.3456 0.1324 22 6 6.1136 -6.0566 1.9700 23 6 6.1980 -5.6273 3.2814 24 6 7.4342 -5.3884 3.8520 25 6 8.5854 -5.5698 3.1087 26 6 8.5007 -5.9939 1.7957 27 6 7.2647 -6.2371 1.2264 28 6 2.0646 -0.7672 1.2236 29 1 -0.3633 0.4810 0.9082 30 1 -0.3633 0.5458 -0.8707 31 1 -0.3633 -1.0271 -0.0374 32 1 3.1494 1.4202 -0.0375 33 1 1.6739 1.9652 -0.8706 34 1 1.7348 1.9428 0.9081 35 1 2.9759 -0.3136 -1.6078 36 1 1.3059 -0.8308 -2.0114 37 1 3.1106 -2.6936 -1.2488 38 1 1.4450 -2.7721 -0.5917 39 1 2.9900 -2.7790 2.6094 40 1 1.7529 -3.4613 1.5266 41 1 3.2405 -5.4619 2.5497 42 1 5.0137 -8.4532 1.5393 43 1 4.0922 -7.6990 2.8624 44 1 2.3937 -10.9211 2.3193 45 1 5.2985 -5.4823 3.8611 46 1 7.5004 -5.0573 4.8780 47 1 9.5511 -5.3806 3.5537 48 1 9.4002 -6.1360 1.2150 49 1 7.1986 -6.5685 0.2005 50 1 1.2324 -1.1531 1.8124 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594328579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:18 Heat of formation + Delta-G solvation = -21.277787 kcal Electronic energy + Delta-G solvation = -28665.493403 eV Core-core repulsion = 24949.832052 eV Total energy + Delta-G solvation = -3715.661351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.98813 -39.20267 -38.13051 -35.21035 -34.09079 -32.73193 -31.22454 -30.43902 -29.93413 -28.84264 -27.58874 -27.41116 -25.04545 -24.15574 -22.26706 -21.95488 -21.53308 -20.14918 -19.66135 -19.14765 -17.03078 -16.57508 -16.16424 -15.83687 -15.37825 -15.12513 -14.94295 -14.65282 -14.50397 -14.16714 -13.90780 -13.69194 -13.51872 -13.26699 -13.05760 -12.94565 -12.70751 -12.48996 -12.42655 -12.09998 -11.89111 -11.73069 -11.63726 -11.55043 -11.27021 -11.12227 -10.93029 -10.84580 -10.72974 -10.72224 -10.61467 -10.55372 -10.41588 -9.77252 -9.33698 -9.21711 -8.51856 -8.46132 -8.41622 -8.26302 -8.14180 -6.10327 -4.13705 1.81978 1.84209 3.20390 3.25593 3.32707 3.35011 3.55551 4.16758 4.29240 4.38283 4.42189 4.54844 4.69906 5.10790 5.19190 5.24904 5.26130 5.26826 5.30402 5.31416 5.35089 5.40816 5.43002 5.45541 5.49854 5.54468 5.59536 5.70576 5.74111 5.80576 5.87840 5.94418 5.97543 6.01451 6.09211 6.19586 6.20985 6.24709 6.39317 6.47010 6.60602 6.88077 6.88884 6.91110 6.96040 6.97252 7.15369 7.44336 7.49525 7.64769 7.86504 8.19660 8.26066 8.86713 8.92173 9.51219 11.00234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.003995 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.880301 B = 7007.753525 C = 9823.165041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.114 4.114 5 C 0.036 3.964 6 N -0.495 5.495 7 C 0.026 3.974 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.704 5.704 11 C 0.187 3.813 12 H 0.085 0.915 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.069 4.069 23 C -0.107 4.107 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.108 4.108 28 C 0.043 3.957 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.040 0.960 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.399 0.601 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.044 0.956 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 17.977 0.626 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.192 4.192 4 C -0.152 4.152 5 C -0.091 4.091 6 N -0.219 5.219 7 C -0.106 4.106 8 C 0.297 3.703 9 O -0.409 6.409 10 N -0.354 5.354 11 C 0.082 3.918 12 H 0.103 0.897 13 C -0.013 4.013 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.071 4.071 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.233 0.767 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.137 0.863 50 H 0.063 0.937 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.223 18.068 0.009 18.109 hybrid contribution -2.056 -0.806 0.150 2.213 sum -0.833 17.262 0.158 17.282 Atomic orbital electron populations 1.21915 0.94216 1.01776 1.01726 1.21439 0.95282 0.95808 0.95265 1.21836 1.01304 0.94636 1.01404 1.22663 1.01008 0.95140 0.96391 1.23310 0.98794 0.96533 0.90468 1.64530 1.50828 1.04552 1.02014 1.22183 0.98298 0.91477 0.98607 1.20272 0.83924 0.82644 0.83431 1.90640 1.43520 1.79145 1.27561 1.45948 1.40508 1.14936 1.33991 1.20195 0.83194 0.89602 0.98782 0.89663 1.19385 0.96592 0.88130 0.97220 1.21129 1.07040 1.02516 1.25075 0.92463 1.24985 0.97690 0.96278 0.95176 1.69960 1.39501 1.08844 1.34752 0.86608 0.83490 0.78299 0.79680 1.20603 1.21241 1.19978 1.20551 0.96196 0.96232 0.94089 1.20891 0.97248 0.99553 0.94875 1.21032 0.92788 1.01127 0.99374 1.20985 0.97923 1.01681 0.94768 1.21036 0.97302 1.00361 0.95387 1.21011 0.92015 0.99836 0.99819 1.23041 0.95595 0.93379 0.96453 0.92607 0.92462 0.92691 0.92086 0.92738 0.92784 0.90624 0.91177 0.88528 0.94192 0.88358 0.91871 0.76679 0.94829 0.95765 0.92865 0.86632 0.86790 0.86884 0.86653 0.86253 0.93718 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.20 37.16 0.30 -0.86 16 2 C -0.08 -0.74 0.97 -153.05 -0.15 -0.89 16 3 C -0.13 -1.11 8.24 37.15 0.31 -0.81 16 4 C -0.11 -1.24 6.18 -24.77 -0.15 -1.39 16 5 C 0.04 0.50 5.86 -1.90 -0.01 0.49 16 6 N -0.50 -6.84 4.96 -231.88 -1.15 -7.99 16 7 C 0.03 0.36 5.18 -4.97 -0.03 0.33 16 8 C 0.51 9.06 7.59 -10.98 -0.08 8.98 16 9 O -0.53 -11.20 14.50 5.55 0.08 -11.12 16 10 N -0.70 -12.59 4.02 -54.93 -0.22 -12.81 16 11 C 0.19 3.80 2.12 -69.09 -0.15 3.66 16 12 H 0.09 1.91 7.44 -51.93 -0.39 1.53 16 13 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 14 C -0.52 -13.66 8.84 -34.44 -0.30 -13.97 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 C -0.07 -1.31 4.91 -104.62 -0.51 -1.82 16 23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 24 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 25 C -0.14 -1.98 10.05 -39.58 -0.40 -2.37 16 26 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 28 C 0.04 0.47 6.00 -2.75 -0.02 0.45 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 37 H 0.10 1.57 6.91 -51.93 -0.36 1.22 16 38 H 0.04 0.55 7.85 -51.93 -0.41 0.14 16 39 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 40 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 41 H 0.40 6.51 8.60 -40.82 -0.35 6.16 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 46 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 48 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 49 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 50 H 0.04 0.45 7.31 -51.93 -0.38 0.07 16 51 H 0.08 0.82 7.69 -51.93 -0.40 0.43 16 LS Contribution 409.42 15.07 6.17 6.17 Total: -1.00 -30.92 409.42 -11.31 -42.23 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.95 Total: 7.68 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.96 Total: -15.30 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.63 Total: -45.57 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.92 -11.31 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594328579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.957 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds