Wall clock time and date at job start Tue Mar 31 2020 16:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.27116 * 2 1 4 4 C 1.54781 * 110.15432 * 237.80168 * 2 1 3 5 5 C 1.54937 * 102.83798 * 262.84810 * 4 2 1 6 6 N 1.48531 * 103.37331 * 322.79651 * 5 4 2 7 7 C 1.46908 * 110.99857 * 159.63431 * 6 5 4 8 8 C 1.50705 * 109.46685 * 69.87722 * 7 6 5 9 9 O 1.21284 * 120.00055 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00128 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47197 * 324.99506 * 11 10 8 13 13 C 1.53000 * 109.47164 * 204.99566 * 11 10 8 14 14 C 1.50707 * 109.47141 * 65.00036 * 13 11 10 15 15 H 1.07998 * 119.99561 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00098 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00064 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47243 * 89.99666 * 18 16 14 20 20 H 1.48506 * 109.46906 * 209.99540 * 18 16 14 21 21 H 1.48500 * 109.47184 * 329.99476 * 18 16 14 22 22 C 1.50701 * 109.47702 * 84.99803 * 11 10 8 23 23 C 1.38244 * 119.99651 * 39.72006 * 22 11 10 24 24 C 1.38229 * 119.99371 * 179.79049 * 23 22 11 25 25 C 1.38230 * 120.00704 * 0.44661 * 24 23 22 26 26 C 1.38236 * 119.99655 * 359.81362 * 25 24 23 27 27 C 1.38228 * 120.00427 * 220.00352 * 22 11 10 28 28 C 1.47901 * 105.82310 * 39.12709 * 6 5 4 29 29 H 1.09000 * 109.47025 * 297.90651 * 1 2 3 30 30 H 1.08993 * 109.47188 * 57.91650 * 1 2 3 31 31 H 1.09007 * 109.46831 * 177.91348 * 1 2 3 32 32 H 1.09004 * 109.46893 * 182.09015 * 3 2 1 33 33 H 1.08995 * 109.47387 * 302.08812 * 3 2 1 34 34 H 1.09003 * 109.47552 * 62.08942 * 3 2 1 35 35 H 1.08996 * 110.65506 * 144.56348 * 4 2 1 36 36 H 1.09005 * 110.87400 * 21.22897 * 4 2 1 37 37 H 1.09002 * 110.66811 * 204.28059 * 5 4 2 38 38 H 1.09001 * 110.66542 * 81.31698 * 5 4 2 39 39 H 1.08997 * 109.46891 * 189.87443 * 7 6 5 40 40 H 1.08998 * 109.47004 * 309.88012 * 7 6 5 41 41 H 0.96997 * 119.99624 * 359.97438 * 10 8 7 42 42 H 1.08996 * 109.47538 * 184.99460 * 13 11 10 43 43 H 1.09003 * 109.47434 * 304.99977 * 13 11 10 44 44 H 0.97003 * 119.99930 * 180.02562 * 17 16 14 45 45 H 1.07994 * 119.99975 * 0.02562 * 23 22 11 46 46 H 1.08011 * 119.99593 * 180.27548 * 24 23 22 47 47 H 1.08001 * 120.00660 * 179.83293 * 25 24 23 48 48 H 1.08005 * 119.99769 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.00120 * 359.97438 * 27 22 11 50 50 H 1.09004 * 109.92027 * 94.01264 * 28 6 5 51 51 H 1.08993 * 109.91982 * 215.11956 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0633 -0.7742 -1.2296 5 6 2.3585 -2.1803 -0.6495 6 7 2.8811 -1.8884 0.7098 7 6 2.7669 -3.0653 1.5817 8 6 3.7436 -4.1208 1.1309 9 8 4.4634 -3.9133 0.1771 10 7 3.8164 -5.2958 1.7871 11 6 4.7662 -6.3216 1.3493 12 1 4.8549 -6.2949 0.2632 13 6 4.2657 -7.6998 1.7862 14 6 2.9781 -8.0170 1.0702 15 1 2.5586 -7.3064 0.3734 16 6 2.3352 -9.2138 1.3053 17 7 2.8458 -10.0789 2.1541 18 14 0.7388 -9.6065 0.4182 19 1 1.0402 -10.3041 -0.8577 20 1 -0.1009 -10.4820 1.2747 21 1 0.0082 -8.3456 0.1324 22 6 6.1136 -6.0566 1.9700 23 6 6.1980 -5.6273 3.2814 24 6 7.4342 -5.3884 3.8520 25 6 8.5854 -5.5698 3.1087 26 6 8.5007 -5.9939 1.7957 27 6 7.2647 -6.2371 1.2264 28 6 2.0646 -0.7672 1.2236 29 1 -0.3633 0.4810 0.9082 30 1 -0.3633 0.5458 -0.8707 31 1 -0.3633 -1.0271 -0.0374 32 1 3.1494 1.4202 -0.0375 33 1 1.6739 1.9652 -0.8706 34 1 1.7348 1.9428 0.9081 35 1 2.9759 -0.3136 -1.6078 36 1 1.3059 -0.8308 -2.0114 37 1 3.1106 -2.6936 -1.2488 38 1 1.4450 -2.7721 -0.5917 39 1 2.9900 -2.7790 2.6094 40 1 1.7529 -3.4613 1.5266 41 1 3.2405 -5.4619 2.5497 42 1 5.0137 -8.4532 1.5393 43 1 4.0922 -7.6990 2.8624 44 1 2.3937 -10.9211 2.3193 45 1 5.2985 -5.4823 3.8611 46 1 7.5004 -5.0573 4.8780 47 1 9.5511 -5.3806 3.5537 48 1 9.4002 -6.1360 1.2150 49 1 7.1986 -6.5685 0.2005 50 1 1.2324 -1.1531 1.8124 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594328579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:17 Heat of formation + Delta-G solvation = -38.927743 kcal Electronic energy + Delta-G solvation = -28666.258763 eV Core-core repulsion = 24949.832052 eV Total energy + Delta-G solvation = -3716.426711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23846 -40.36167 -39.40562 -36.78388 -35.10203 -34.71724 -32.65612 -31.69891 -30.94139 -30.52121 -28.62929 -28.15333 -26.65426 -25.25137 -23.79464 -23.39009 -22.63841 -21.52643 -21.09910 -19.99116 -18.71853 -18.02983 -17.70248 -17.13395 -16.60467 -16.40090 -16.33239 -16.11984 -15.82809 -15.21996 -15.06862 -14.67146 -14.55040 -14.41210 -14.30870 -14.18379 -14.11993 -13.88648 -13.67522 -13.45481 -13.36580 -12.94527 -12.75415 -12.67224 -12.59299 -12.46141 -12.40142 -12.25940 -12.13273 -11.87057 -11.63914 -11.58567 -11.51203 -11.39613 -11.32942 -10.74089 -10.55671 -9.94054 -9.74731 -9.50942 -9.35888 -8.21451 -6.31741 0.52200 0.56680 1.37788 1.39599 1.49270 1.79541 2.24631 2.38436 2.96845 3.10696 3.14817 3.58140 3.67498 3.89538 3.95891 4.03604 4.05155 4.21338 4.26205 4.29713 4.32746 4.34344 4.40870 4.46981 4.48641 4.64955 4.66560 4.77356 4.79340 4.79682 4.84341 4.88899 4.92824 5.09421 5.11407 5.13454 5.15897 5.20613 5.29560 5.31035 5.35764 5.42702 5.49915 5.61595 5.62693 5.64832 5.77087 5.86165 5.92734 6.00467 6.15835 6.20680 6.77483 6.80853 7.37020 7.44486 8.89346 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.003995 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.880301 B = 7007.753525 C = 9823.165041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.109 4.109 5 C 0.036 3.964 6 N -0.515 5.515 7 C 0.035 3.965 8 C 0.509 3.491 9 O -0.571 6.571 10 N -0.700 5.700 11 C 0.203 3.797 12 H 0.054 0.946 13 C 0.039 3.961 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.096 4.096 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.135 4.135 28 C 0.043 3.957 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.407 0.593 42 H 0.001 0.999 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.122 0.878 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.143 0.857 49 H 0.110 0.890 50 H 0.056 0.944 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 20.084 1.896 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.074 4.074 3 C -0.188 4.188 4 C -0.147 4.147 5 C -0.092 4.092 6 N -0.239 5.239 7 C -0.097 4.097 8 C 0.296 3.704 9 O -0.450 6.450 10 N -0.350 5.350 11 C 0.098 3.902 12 H 0.072 0.928 13 C 0.002 3.998 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.781 3.219 19 H -0.205 1.205 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.084 4.084 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.243 0.757 42 H 0.019 0.981 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.140 0.860 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.160 0.840 49 H 0.128 0.872 50 H 0.075 0.925 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.602 20.193 1.293 20.243 hybrid contribution -1.761 -1.466 -0.243 2.305 sum -1.159 18.727 1.049 18.792 Atomic orbital electron populations 1.21888 0.92986 1.01559 1.02847 1.21449 0.96189 0.96137 0.93653 1.21803 1.00608 0.93844 1.02557 1.22643 1.01221 0.93469 0.97387 1.23198 0.97388 0.97961 0.90634 1.64475 1.52234 1.05166 1.02040 1.22156 0.97366 0.90427 0.99709 1.21011 0.83960 0.82894 0.82547 1.90624 1.45267 1.79838 1.29226 1.45851 1.40240 1.14688 1.34228 1.19652 0.85055 0.88520 0.96992 0.92821 1.19118 0.95009 0.89587 0.96121 1.21383 1.07793 1.02579 1.24911 0.92941 1.25774 1.00980 0.96126 0.95858 1.70073 1.41045 1.09313 1.36144 0.85589 0.79579 0.78322 0.78385 1.20506 1.20510 1.19051 1.20451 0.95263 0.98634 0.95390 1.21070 0.98798 0.99827 0.94172 1.21445 0.91984 0.99890 1.00892 1.21465 0.99482 0.99716 0.94123 1.21379 0.97095 0.99432 0.96329 1.21166 0.93186 1.01179 0.99844 1.23136 0.95728 0.92426 0.97151 0.91389 0.91493 0.93556 0.93133 0.91777 0.91474 0.91292 0.89940 0.92111 0.94423 0.85723 0.90606 0.75719 0.98064 0.96903 0.92699 0.85984 0.83512 0.83115 0.83969 0.87202 0.92543 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.20 71.98 0.59 -1.33 16 2 C -0.07 -1.26 0.97 -51.24 -0.05 -1.31 16 3 C -0.13 -1.87 8.24 71.98 0.59 -1.27 16 4 C -0.11 -2.31 6.18 31.86 0.20 -2.11 16 5 C 0.04 1.01 5.86 86.65 0.51 1.51 16 6 N -0.51 -13.96 4.96 -887.54 -4.40 -18.36 16 7 C 0.03 0.93 5.18 85.56 0.44 1.38 16 8 C 0.51 18.50 7.59 87.66 0.67 19.17 16 9 O -0.57 -25.26 14.50 -3.04 -0.04 -25.30 16 10 N -0.70 -25.93 4.02 -446.10 -1.79 -27.73 16 11 C 0.20 8.80 2.12 44.25 0.09 8.90 16 12 H 0.05 2.63 7.44 -2.39 -0.02 2.61 16 13 C 0.04 1.98 4.50 29.85 0.13 2.11 16 14 C -0.53 -28.79 8.84 25.60 0.23 -28.56 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C 0.01 0.63 5.46 84.65 0.46 1.09 16 17 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 18 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C -0.10 -3.76 4.91 -19.86 -0.10 -3.86 16 23 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 24 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 27 C -0.14 -5.00 9.67 22.27 0.22 -4.79 16 28 C 0.04 0.84 6.00 86.45 0.52 1.36 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.05 0.83 8.12 -2.38 -0.02 0.81 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 36 H 0.08 1.51 7.86 -2.38 -0.02 1.49 16 37 H 0.06 2.12 6.91 -2.39 -0.02 2.10 16 38 H 0.04 1.04 7.85 -2.39 -0.02 1.02 16 39 H 0.12 2.68 8.11 -2.39 -0.02 2.66 16 40 H 0.08 1.86 7.90 -2.39 -0.02 1.84 16 41 H 0.41 13.54 8.60 -92.71 -0.80 12.74 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 45 H 0.12 3.83 7.71 -2.91 -0.02 3.81 16 46 H 0.15 3.11 8.06 -2.90 -0.02 3.08 16 47 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 48 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 49 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 50 H 0.06 0.99 7.31 -2.38 -0.02 0.97 16 51 H 0.09 1.58 7.69 -2.39 -0.02 1.57 16 Total: -1.00 -69.63 409.42 1.55 -68.09 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.09 Total: 33.33 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 5.38 Total: -21.57 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -5.91 Total: -99.91 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.63 1.55 -68.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594328579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.158 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds