Wall clock time and date at job start Tue Mar 31 2020 15:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38187 * 119.96537 * 2 1 4 4 C 1.38128 * 120.14969 * 180.02562 * 3 2 1 5 5 C 1.38986 * 120.06309 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.03874 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00040 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47369 * 182.74522 * 7 6 5 9 9 C 1.50701 * 115.54848 * 303.86031 * 8 7 6 10 10 H 1.07995 * 120.00043 * 95.16442 * 9 8 7 11 11 C 1.37875 * 119.99791 * 275.16783 * 9 8 7 12 12 N 1.31518 * 120.00305 * 5.92488 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 185.92929 * 11 9 8 14 14 H 1.48502 * 109.47198 * 89.99956 * 13 11 9 15 15 H 1.48500 * 109.46834 * 209.99888 * 13 11 9 16 16 H 1.48500 * 109.46861 * 329.99618 * 13 11 9 17 17 C 1.53001 * 117.49754 * 89.52860 * 8 7 6 18 18 C 1.52999 * 117.49912 * 158.18860 * 8 7 6 19 19 C 1.38762 * 119.92209 * 0.23346 * 5 4 3 20 20 C 1.38766 * 119.85465 * 359.51020 * 19 5 4 21 21 N 1.39922 * 120.02927 * 180.23278 * 20 19 5 22 22 C 1.34777 * 120.00484 * 20.08562 * 21 20 19 23 23 O 1.21289 * 119.99262 * 5.32796 * 22 21 20 24 24 C 1.50695 * 120.00105 * 185.32834 * 22 21 20 25 25 C 1.53006 * 109.46996 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.47242 * 300.00138 * 24 22 21 27 27 C 1.52998 * 109.47054 * 60.00571 * 24 22 21 28 28 H 1.09002 * 109.47086 * 89.99998 * 1 2 3 29 29 H 1.09001 * 109.47050 * 210.00434 * 1 2 3 30 30 H 1.09006 * 109.46971 * 330.00107 * 1 2 3 31 31 H 1.08008 * 119.92350 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.96952 * 179.97438 * 4 3 2 33 33 H 0.97002 * 119.99859 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47080 * 62.74338 * 7 6 5 35 35 H 1.09001 * 109.47185 * 302.74979 * 7 6 5 36 36 H 0.96995 * 120.00454 * 174.98884 * 12 11 9 37 37 H 1.09005 * 117.49405 * 215.00373 * 17 8 7 38 38 H 1.09000 * 117.49781 * 0.02562 * 17 8 7 39 39 H 1.09001 * 117.49773 * 359.97376 * 18 8 7 40 40 H 1.09004 * 117.49676 * 144.97671 * 18 8 7 41 41 H 1.07998 * 120.07096 * 179.72887 * 19 5 4 42 42 H 0.97003 * 119.99662 * 200.08672 * 21 20 19 43 43 H 1.09001 * 109.46718 * 59.99960 * 25 24 22 44 44 H 1.09000 * 109.47011 * 180.02562 * 25 24 22 45 45 H 1.08996 * 109.47055 * 300.00170 * 25 24 22 46 46 H 1.08998 * 109.47247 * 59.99979 * 26 24 22 47 47 H 1.09006 * 109.46843 * 180.02562 * 26 24 22 48 48 H 1.09001 * 109.46792 * 299.99818 * 26 24 22 49 49 H 1.08996 * 109.47669 * 59.99419 * 27 24 22 50 50 H 1.09000 * 109.47168 * 179.97438 * 27 24 22 51 51 H 1.09010 * 109.47095 * 299.99703 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2016 -0.0005 5 6 4.2786 0.0010 -0.0016 6 7 5.6753 0.0060 -0.0027 7 6 6.4031 1.2774 -0.0033 8 6 7.9069 1.0042 -0.0735 9 6 8.4576 0.1161 1.0124 10 1 8.5711 -0.9436 0.8376 11 6 8.8163 0.6564 2.2290 12 7 8.5707 1.9230 2.4842 13 14 9.6514 -0.4105 3.5151 14 1 11.1237 -0.3452 3.3324 15 1 9.2985 0.0813 4.8711 16 1 9.1957 -1.8158 3.3641 17 6 8.5418 0.8993 -1.4616 18 6 8.8060 2.1294 -0.5897 19 6 3.5883 -1.2028 -0.0071 20 6 2.2007 -1.2034 -0.0011 21 7 1.5010 -2.4151 -0.0016 22 6 2.1149 -3.5481 0.3933 23 8 3.2416 -3.5031 0.8401 24 6 1.4016 -4.8707 0.2796 25 6 2.3135 -5.9876 0.7914 26 6 0.1212 -4.8331 1.1163 27 6 1.0462 -5.1342 -1.1850 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6553 2.1315 -0.0004 32 1 4.1149 2.1389 -0.0010 33 1 6.1633 -0.8323 -0.0031 34 1 6.1759 1.8265 0.9105 35 1 6.1005 1.8689 -0.8673 36 1 8.7562 2.2853 3.3646 37 1 9.3578 0.1880 -1.5894 38 1 7.8882 1.0254 -2.3248 39 1 8.3261 3.0641 -0.8796 40 1 9.7957 2.2275 -0.1435 41 1 4.1299 -2.1371 -0.0123 42 1 0.5740 -2.4397 -0.2863 43 1 2.5671 -5.8000 1.8348 44 1 1.7977 -6.9443 0.7088 45 1 3.2253 -6.0141 0.1949 46 1 -0.5282 -4.0375 0.7513 47 1 -0.3945 -5.7900 1.0344 48 1 0.3745 -4.6454 2.1598 49 1 1.9583 -5.1609 -1.7812 50 1 0.5306 -6.0910 -1.2674 51 1 0.3967 -4.3385 -1.5502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594706296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:41 Heat of formation + Delta-G solvation = 2.092951 kcal Electronic energy + Delta-G solvation = -28608.451170 eV Core-core repulsion = 24893.803250 eV Total energy + Delta-G solvation = -3714.647920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83177 -38.80747 -37.05402 -35.87233 -35.27131 -33.65434 -31.95493 -30.88423 -29.45106 -27.70544 -27.42677 -26.67345 -25.41349 -24.22906 -23.87266 -22.00213 -21.13419 -20.35522 -19.48435 -19.05376 -17.50086 -16.77809 -16.23233 -15.63437 -15.33792 -15.20169 -14.67859 -14.46039 -14.39585 -14.13043 -14.00489 -13.71395 -13.44971 -13.30713 -13.04007 -12.92242 -12.62654 -12.59544 -12.49536 -12.13296 -12.02116 -11.95284 -11.68046 -11.56454 -11.26962 -11.24826 -11.09197 -11.06978 -10.95300 -10.83880 -10.52229 -10.40273 -10.19943 -9.52827 -9.35783 -9.18734 -8.82830 -8.46018 -8.15801 -7.76864 -6.56502 -6.05442 -4.12947 1.74647 2.06563 2.73781 3.03231 3.29656 3.36947 3.40834 4.22070 4.34126 4.38480 4.41361 4.47446 4.57165 4.90157 5.17728 5.18797 5.23508 5.28158 5.29555 5.35384 5.36283 5.49467 5.50546 5.60322 5.61514 5.67698 5.73117 5.76331 5.88990 5.89622 6.00829 6.03590 6.10251 6.15703 6.25746 6.34525 6.44785 6.55017 6.61156 6.71433 6.73786 6.87600 6.97630 7.03013 7.08444 7.38433 7.41946 7.50457 7.54165 7.85101 8.14544 8.21668 8.39308 8.65740 8.87931 9.54088 11.02576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003298 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.485394 B = 8488.893098 C = 9731.943214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.206 4.206 3 C -0.048 4.048 4 C -0.221 4.221 5 C 0.250 3.750 6 N -0.712 5.712 7 C 0.167 3.833 8 C 0.031 3.969 9 C -0.498 4.498 10 H 0.059 0.941 11 C 0.076 3.924 12 N -0.876 5.876 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.211 4.211 18 C -0.150 4.150 19 C -0.225 4.225 20 C 0.192 3.808 21 N -0.665 5.665 22 C 0.515 3.485 23 O -0.505 6.505 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.142 4.142 27 C -0.141 4.141 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.403 0.597 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.406 0.594 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.616 -9.506 -6.582 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.211 4.211 3 C -0.068 4.068 4 C -0.245 4.245 5 C 0.140 3.860 6 N -0.335 5.335 7 C 0.043 3.957 8 C 0.030 3.970 9 C -0.535 4.535 10 H 0.077 0.923 11 C -0.128 4.128 12 N -0.513 5.513 13 Si 0.717 3.283 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.248 4.248 18 C -0.188 4.188 19 C -0.250 4.250 20 C 0.097 3.903 21 N -0.308 5.308 22 C 0.302 3.698 23 O -0.379 6.379 24 C -0.089 4.089 25 C -0.187 4.187 26 C -0.200 4.200 27 C -0.199 4.199 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.242 0.758 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.580 -9.186 -6.132 21.615 hybrid contribution 0.227 -0.624 0.720 0.979 sum -18.353 -9.810 -5.412 21.503 Atomic orbital electron populations 1.20481 0.92163 1.01717 1.00943 1.19048 0.94959 0.91677 1.15388 1.20415 0.93314 0.96169 0.96858 1.20618 0.94003 0.96842 1.13034 1.17818 0.84679 0.92980 0.90505 1.44920 1.01290 1.09800 1.77512 1.20933 0.92092 0.83967 0.98746 1.18976 0.88824 0.98172 0.91002 1.20334 1.42651 0.93440 0.97117 0.92256 1.24948 0.94965 0.94755 0.98150 1.69962 1.47111 1.12636 1.21553 0.86642 0.79859 0.80919 0.80882 1.20646 1.21240 1.19790 1.23037 1.04121 1.02518 0.95119 1.22489 1.01855 0.91211 1.03242 1.20857 0.92411 0.98320 1.13383 1.17213 0.90758 0.83803 0.98552 1.43533 1.15549 1.06528 1.65205 1.20747 0.86820 0.85332 0.76937 1.90697 1.18562 1.86329 1.42267 1.20839 0.96983 0.93066 0.97996 1.21682 0.98893 0.95792 1.02316 1.21892 0.95246 1.02760 1.00056 1.21881 1.02238 1.02453 0.93306 0.92519 0.93138 0.91924 0.86604 0.86292 0.76165 0.91794 0.95277 0.92934 0.90459 0.91671 0.91784 0.89886 0.83559 0.75835 0.91704 0.91959 0.91667 0.92253 0.91157 0.91788 0.91773 0.91195 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.45 36.00 0.34 -0.62 16 2 C -0.21 -2.92 5.90 -104.40 -0.62 -3.53 16 3 C -0.05 -0.73 9.68 -39.64 -0.38 -1.11 16 4 C -0.22 -3.96 9.30 -39.34 -0.37 -4.33 16 5 C 0.25 4.90 6.65 -83.82 -0.56 4.34 16 6 N -0.71 -15.09 5.59 -58.66 -0.33 -15.42 16 7 C 0.17 3.73 4.80 -4.04 -0.02 3.71 16 8 C 0.03 0.74 1.50 -155.66 -0.23 0.51 16 9 C -0.50 -13.31 8.18 -34.44 -0.28 -13.60 16 10 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 11 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 12 N -0.88 -24.64 12.92 55.43 0.72 -23.92 16 13 Si 0.89 21.47 29.55 -169.99 -5.02 16.44 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.21 -4.55 9.93 -26.69 -0.27 -4.81 16 18 C -0.15 -3.46 9.47 -26.69 -0.25 -3.71 16 19 C -0.22 -4.18 8.62 -39.19 -0.34 -4.52 16 20 C 0.19 2.99 6.48 -83.72 -0.54 2.45 16 21 N -0.66 -8.09 4.85 -9.88 -0.05 -8.14 16 22 C 0.51 6.79 6.33 -10.99 -0.07 6.72 16 23 O -0.50 -8.97 12.89 5.55 0.07 -8.90 16 24 C -0.09 -0.77 0.87 -155.66 -0.14 -0.91 16 25 C -0.13 -1.23 7.76 37.16 0.29 -0.94 16 26 C -0.14 -0.97 8.37 37.16 0.31 -0.66 16 27 C -0.14 -0.99 8.37 37.16 0.31 -0.68 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.44 6.88 -51.93 -0.36 0.08 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.12 2.13 6.72 -52.49 -0.35 1.78 16 33 H 0.40 8.79 8.05 -40.82 -0.33 8.46 16 34 H 0.06 1.59 8.06 -51.93 -0.42 1.18 16 35 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 36 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 41 H 0.15 2.93 5.44 -52.49 -0.29 2.64 16 42 H 0.41 3.55 6.06 -40.82 -0.25 3.30 16 43 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.06 0.33 7.45 -51.93 -0.39 -0.06 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.36 7.69 -51.92 -0.40 -0.04 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -30.46 408.21 -10.00 -40.47 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.64 Total: 13.02 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.91 Total: -19.71 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.34 Total: -47.47 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.07 Total: -8.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.46 -10.00 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594706296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.559 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds