Wall clock time and date at job start Tue Mar 31 2020 15:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38187 * 119.96537 * 2 1 4 4 C 1.38128 * 120.14969 * 180.02562 * 3 2 1 5 5 C 1.38986 * 120.06309 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.03874 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00040 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47369 * 182.74522 * 7 6 5 9 9 C 1.50701 * 115.54848 * 303.86031 * 8 7 6 10 10 H 1.07995 * 120.00043 * 95.16442 * 9 8 7 11 11 C 1.37875 * 119.99791 * 275.16783 * 9 8 7 12 12 N 1.31518 * 120.00305 * 5.92488 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 185.92929 * 11 9 8 14 14 H 1.48502 * 109.47198 * 89.99956 * 13 11 9 15 15 H 1.48500 * 109.46834 * 209.99888 * 13 11 9 16 16 H 1.48500 * 109.46861 * 329.99618 * 13 11 9 17 17 C 1.53001 * 117.49754 * 89.52860 * 8 7 6 18 18 C 1.52999 * 117.49912 * 158.18860 * 8 7 6 19 19 C 1.38762 * 119.92209 * 0.23346 * 5 4 3 20 20 C 1.38766 * 119.85465 * 359.51020 * 19 5 4 21 21 N 1.39922 * 120.02927 * 180.23278 * 20 19 5 22 22 C 1.34777 * 120.00484 * 20.08562 * 21 20 19 23 23 O 1.21289 * 119.99262 * 5.32796 * 22 21 20 24 24 C 1.50695 * 120.00105 * 185.32834 * 22 21 20 25 25 C 1.53006 * 109.46996 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.47242 * 300.00138 * 24 22 21 27 27 C 1.52998 * 109.47054 * 60.00571 * 24 22 21 28 28 H 1.09002 * 109.47086 * 89.99998 * 1 2 3 29 29 H 1.09001 * 109.47050 * 210.00434 * 1 2 3 30 30 H 1.09006 * 109.46971 * 330.00107 * 1 2 3 31 31 H 1.08008 * 119.92350 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.96952 * 179.97438 * 4 3 2 33 33 H 0.97002 * 119.99859 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47080 * 62.74338 * 7 6 5 35 35 H 1.09001 * 109.47185 * 302.74979 * 7 6 5 36 36 H 0.96995 * 120.00454 * 174.98884 * 12 11 9 37 37 H 1.09005 * 117.49405 * 215.00373 * 17 8 7 38 38 H 1.09000 * 117.49781 * 0.02562 * 17 8 7 39 39 H 1.09001 * 117.49773 * 359.97376 * 18 8 7 40 40 H 1.09004 * 117.49676 * 144.97671 * 18 8 7 41 41 H 1.07998 * 120.07096 * 179.72887 * 19 5 4 42 42 H 0.97003 * 119.99662 * 200.08672 * 21 20 19 43 43 H 1.09001 * 109.46718 * 59.99960 * 25 24 22 44 44 H 1.09000 * 109.47011 * 180.02562 * 25 24 22 45 45 H 1.08996 * 109.47055 * 300.00170 * 25 24 22 46 46 H 1.08998 * 109.47247 * 59.99979 * 26 24 22 47 47 H 1.09006 * 109.46843 * 180.02562 * 26 24 22 48 48 H 1.09001 * 109.46792 * 299.99818 * 26 24 22 49 49 H 1.08996 * 109.47669 * 59.99419 * 27 24 22 50 50 H 1.09000 * 109.47168 * 179.97438 * 27 24 22 51 51 H 1.09010 * 109.47095 * 299.99703 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2016 -0.0005 5 6 4.2786 0.0010 -0.0016 6 7 5.6753 0.0060 -0.0027 7 6 6.4031 1.2774 -0.0033 8 6 7.9069 1.0042 -0.0735 9 6 8.4576 0.1161 1.0124 10 1 8.5711 -0.9436 0.8376 11 6 8.8163 0.6564 2.2290 12 7 8.5707 1.9230 2.4842 13 14 9.6514 -0.4105 3.5151 14 1 11.1237 -0.3452 3.3324 15 1 9.2985 0.0813 4.8711 16 1 9.1957 -1.8158 3.3641 17 6 8.5418 0.8993 -1.4616 18 6 8.8060 2.1294 -0.5897 19 6 3.5883 -1.2028 -0.0071 20 6 2.2007 -1.2034 -0.0011 21 7 1.5010 -2.4151 -0.0016 22 6 2.1149 -3.5481 0.3933 23 8 3.2416 -3.5031 0.8401 24 6 1.4016 -4.8707 0.2796 25 6 2.3135 -5.9876 0.7914 26 6 0.1212 -4.8331 1.1163 27 6 1.0462 -5.1342 -1.1850 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6553 2.1315 -0.0004 32 1 4.1149 2.1389 -0.0010 33 1 6.1633 -0.8323 -0.0031 34 1 6.1759 1.8265 0.9105 35 1 6.1005 1.8689 -0.8673 36 1 8.7562 2.2853 3.3646 37 1 9.3578 0.1880 -1.5894 38 1 7.8882 1.0254 -2.3248 39 1 8.3261 3.0641 -0.8796 40 1 9.7957 2.2275 -0.1435 41 1 4.1299 -2.1371 -0.0123 42 1 0.5740 -2.4397 -0.2863 43 1 2.5671 -5.8000 1.8348 44 1 1.7977 -6.9443 0.7088 45 1 3.2253 -6.0141 0.1949 46 1 -0.5282 -4.0375 0.7513 47 1 -0.3945 -5.7900 1.0344 48 1 0.3745 -4.6454 2.1598 49 1 1.9583 -5.1609 -1.7812 50 1 0.5306 -6.0910 -1.2674 51 1 0.3967 -4.3385 -1.5502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594706296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:40 Heat of formation + Delta-G solvation = -14.407984 kcal Electronic energy + Delta-G solvation = -28609.166704 eV Core-core repulsion = 24893.803250 eV Total energy + Delta-G solvation = -3715.363454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92492 -40.08257 -38.75408 -36.74888 -36.66003 -34.92618 -34.03241 -32.16879 -30.68282 -28.33000 -28.22671 -28.01101 -27.31675 -25.63967 -24.99102 -23.16197 -22.93596 -21.69262 -21.05550 -20.33350 -18.69035 -18.19616 -17.71839 -16.96551 -16.73084 -16.57469 -16.35650 -15.82671 -15.54153 -15.46853 -14.91191 -14.83021 -14.76329 -14.53897 -14.46898 -14.15524 -14.10834 -13.49883 -13.33917 -13.12891 -13.05627 -13.01572 -12.93572 -12.83742 -12.79718 -12.64614 -12.43941 -12.32680 -12.18769 -12.07680 -11.93777 -11.89299 -11.68172 -11.42121 -10.90530 -10.51862 -10.49824 -10.41248 -10.02262 -9.05071 -8.15845 -8.02911 -6.26449 0.46617 0.76956 1.34517 1.36767 1.45368 1.65138 2.02737 2.37149 2.72908 3.04978 3.13413 3.48357 3.53561 3.79260 3.90164 4.05637 4.21438 4.22451 4.25602 4.40221 4.51579 4.54006 4.62702 4.64945 4.69467 4.71666 4.72753 4.80563 4.82671 4.93060 4.93471 4.95126 4.97085 4.97688 4.98449 5.08218 5.21376 5.23045 5.25426 5.31802 5.33511 5.42002 5.46841 5.57264 5.59649 5.64957 5.72764 5.73687 6.15414 6.32681 6.48771 6.68852 6.78064 7.01991 7.15121 7.41949 8.92155 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003298 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.485394 B = 8488.893098 C = 9731.943214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.190 4.190 3 C -0.048 4.048 4 C -0.236 4.236 5 C 0.221 3.779 6 N -0.725 5.725 7 C 0.188 3.812 8 C 0.005 3.995 9 C -0.506 4.506 10 H 0.048 0.952 11 C 0.032 3.968 12 N -0.901 5.901 13 Si 0.943 3.057 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.276 1.276 17 C -0.186 4.186 18 C -0.152 4.152 19 C -0.244 4.244 20 C 0.187 3.813 21 N -0.649 5.649 22 C 0.507 3.493 23 O -0.559 6.559 24 C -0.078 4.078 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.139 4.139 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.394 0.606 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.425 0.575 43 H 0.043 0.957 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.048 0.952 49 H 0.046 0.954 50 H 0.096 0.904 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.452 -10.303 -7.615 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.195 4.195 3 C -0.067 4.067 4 C -0.260 4.260 5 C 0.114 3.886 6 N -0.350 5.350 7 C 0.064 3.936 8 C 0.004 3.996 9 C -0.544 4.544 10 H 0.066 0.934 11 C -0.169 4.169 12 N -0.539 5.539 13 Si 0.769 3.231 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.223 4.223 18 C -0.190 4.190 19 C -0.269 4.269 20 C 0.091 3.909 21 N -0.294 5.294 22 C 0.297 3.703 23 O -0.436 6.436 24 C -0.081 4.081 25 C -0.188 4.188 26 C -0.197 4.197 27 C -0.196 4.196 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.167 0.833 32 H 0.130 0.870 33 H 0.228 0.772 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.265 0.735 43 H 0.063 0.937 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.114 0.886 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.491 -9.992 -7.188 25.639 hybrid contribution 1.290 -0.434 1.017 1.700 sum -21.200 -10.426 -6.171 24.418 Atomic orbital electron populations 1.20609 0.88326 1.03360 1.03007 1.19582 0.97589 0.90414 1.11920 1.20824 0.92219 0.98134 0.95499 1.20749 0.95485 0.95843 1.13904 1.18057 0.84001 0.94127 0.92442 1.44774 1.02072 1.08616 1.79547 1.20532 0.91202 0.84413 0.97469 1.19055 0.89776 0.98793 0.91974 1.20559 1.42322 0.93346 0.98192 0.93382 1.25566 0.95676 0.95816 0.99875 1.70055 1.48269 1.13728 1.21808 0.85806 0.79250 0.79210 0.78827 1.19815 1.21084 1.20154 1.23012 1.03608 1.01091 0.94560 1.22419 1.00659 0.92181 1.03720 1.20830 0.94071 0.97129 1.14868 1.17368 0.89969 0.85830 0.97726 1.43455 1.16206 1.05249 1.64504 1.21708 0.86322 0.86854 0.75449 1.90689 1.21148 1.87137 1.44647 1.20895 0.97350 0.89796 1.00087 1.21711 0.98736 0.97730 1.00629 1.21928 0.94120 1.05016 0.98643 1.21912 1.02041 1.04561 0.91104 0.90061 0.91425 0.90494 0.83332 0.87033 0.77230 0.95305 0.93958 0.93102 0.90433 0.89329 0.90331 0.91966 0.85760 0.73465 0.93733 0.88838 0.93803 0.90308 0.88598 0.93250 0.93474 0.88564 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 9.45 71.23 0.67 -0.79 16 2 C -0.19 -4.89 5.90 -19.72 -0.12 -5.01 16 3 C -0.05 -1.36 9.68 22.23 0.22 -1.14 16 4 C -0.24 -8.57 9.30 22.42 0.21 -8.36 16 5 C 0.22 9.05 6.65 38.20 0.25 9.30 16 6 N -0.73 -32.61 5.59 -339.49 -1.90 -34.51 16 7 C 0.19 8.81 4.80 86.38 0.41 9.23 16 8 C 0.00 0.23 1.50 -52.93 -0.08 0.15 16 9 C -0.51 -28.12 8.18 25.60 0.21 -27.91 16 10 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 11 C 0.03 1.78 5.39 84.65 0.46 2.24 16 12 N -0.90 -52.30 12.92 21.45 0.28 -52.02 16 13 Si 0.94 45.38 29.55 68.60 2.03 47.41 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 C -0.19 -8.01 9.93 30.62 0.30 -7.70 16 18 C -0.15 -7.11 9.47 30.62 0.29 -6.82 16 19 C -0.24 -9.47 8.62 22.52 0.19 -9.28 16 20 C 0.19 5.69 6.48 38.14 0.25 5.93 16 21 N -0.65 -14.70 4.85 -303.56 -1.47 -16.17 16 22 C 0.51 13.29 6.33 87.66 0.55 13.84 16 23 O -0.56 -21.02 12.89 -3.06 -0.04 -21.06 16 24 C -0.08 -1.27 0.87 -52.93 -0.05 -1.32 16 25 C -0.13 -2.43 7.76 71.98 0.56 -1.87 16 26 C -0.14 -1.45 8.37 71.98 0.60 -0.85 16 27 C -0.14 -1.55 8.37 71.98 0.60 -0.95 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.82 6.88 -2.39 -0.02 0.81 16 30 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.11 4.12 6.72 -2.91 -0.02 4.10 16 33 H 0.39 18.53 8.05 -92.71 -0.75 17.78 16 34 H 0.03 1.52 8.06 -2.39 -0.02 1.50 16 35 H 0.04 1.82 7.77 -2.39 -0.02 1.80 16 36 H 0.26 14.52 8.32 -92.71 -0.77 13.74 16 37 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 38 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.12 5.39 5.44 -2.91 -0.02 5.37 16 42 H 0.43 5.90 6.06 -92.71 -0.56 5.34 16 43 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 46 H 0.08 0.52 7.45 -2.39 -0.02 0.50 16 47 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.08 0.61 7.69 -2.38 -0.02 0.59 16 Total: -1.00 -71.14 408.21 4.06 -67.09 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.38 Total: 40.56 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 5.54 Total: -31.30 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -3.09 Total: -102.70 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.04 Total: -21.06 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.14 4.06 -67.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594706296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.679 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds