Wall clock time and date at job start Tue Mar 31 2020 16:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46861 * 2 1 4 4 C 1.38234 * 119.99740 * 90.00000 * 3 2 1 5 5 C 1.38234 * 119.99696 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00221 * 359.95677 * 5 4 3 7 7 C 1.50695 * 120.00357 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47347 * 20.00349 * 7 6 5 9 9 C 1.53000 * 109.47594 * 260.00048 * 7 6 5 10 10 N 1.46506 * 109.47241 * 139.99704 * 7 6 5 11 11 C 1.34770 * 120.00206 * 204.99956 * 10 7 6 12 12 O 1.21584 * 120.00098 * 5.08301 * 11 10 7 13 13 N 1.34777 * 119.99990 * 185.07826 * 11 10 7 14 14 C 1.46930 * 120.63129 * 354.94493 * 13 11 10 15 15 C 1.53193 * 108.77767 * 126.41238 * 14 13 11 16 16 C 1.53037 * 109.31528 * 54.63289 * 15 14 13 17 17 C 1.53040 * 109.53789 * 298.63873 * 16 15 14 18 18 H 1.09004 * 109.50136 * 301.41055 * 17 16 15 19 19 C 1.50699 * 109.52472 * 181.33086 * 17 16 15 20 20 H 1.08000 * 120.00242 * 0.07658 * 19 17 16 21 21 C 1.37877 * 120.00064 * 180.08106 * 19 17 16 22 22 N 1.31519 * 120.00024 * 179.97438 * 21 19 17 23 23 Si 1.86801 * 120.00307 * 359.97438 * 21 19 17 24 24 H 1.48498 * 109.46797 * 89.99921 * 23 21 19 25 25 H 1.48498 * 109.47294 * 210.00251 * 23 21 19 26 26 H 1.48505 * 109.46863 * 330.00468 * 23 21 19 27 27 C 1.46931 * 120.63305 * 174.96235 * 13 11 10 28 28 C 1.38243 * 119.99943 * 0.27461 * 6 5 4 29 29 C 1.38232 * 119.99701 * 359.51823 * 28 6 5 30 30 H 1.08994 * 109.47346 * 60.00135 * 1 2 3 31 31 H 1.08997 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46988 * 299.99241 * 1 2 3 33 33 H 1.08997 * 109.47388 * 240.00097 * 2 1 3 34 34 H 1.09002 * 109.47067 * 119.99821 * 2 1 3 35 35 H 1.07992 * 120.00567 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00212 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47229 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47040 * 300.00058 * 9 7 6 39 39 H 1.08994 * 109.46767 * 60.00089 * 9 7 6 40 40 H 0.97005 * 119.99639 * 25.00940 * 10 7 6 41 41 H 1.09005 * 109.58466 * 246.20165 * 14 13 11 42 42 H 1.08996 * 109.58242 * 6.47693 * 14 13 11 43 43 H 1.08998 * 109.49494 * 174.58731 * 15 14 13 44 44 H 1.09007 * 109.49200 * 294.68515 * 15 14 13 45 45 H 1.08989 * 109.46318 * 178.61521 * 16 15 14 46 46 H 1.09003 * 109.45750 * 58.65143 * 16 15 14 47 47 H 0.97004 * 120.00216 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58557 * 113.79719 * 27 13 11 49 49 H 1.08999 * 109.70038 * 353.44685 * 27 13 11 50 50 H 1.08000 * 120.00198 * 179.72709 * 28 6 5 51 51 H 1.07996 * 120.00214 * 180.25537 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4579 5.4476 0.0000 8 1 3.9093 5.6734 0.9660 9 6 2.2889 6.4019 -0.2522 10 7 4.4590 5.6117 -1.0570 11 6 5.3937 6.5773 -0.9559 12 8 5.4644 7.2516 0.0533 13 7 6.2502 6.7953 -1.9734 14 6 6.2506 5.9186 -3.1525 15 6 6.0992 6.7819 -4.4090 16 6 7.1922 7.8530 -4.4218 17 6 7.0396 8.7548 -3.1948 18 1 6.0517 9.2156 -3.2024 19 6 8.0958 9.8292 -3.2248 20 1 8.8051 9.8667 -4.0384 21 6 8.1569 10.7644 -2.2134 22 7 9.0791 11.7017 -2.2394 23 14 6.9299 10.7000 -0.8064 24 1 7.4716 9.8501 0.2842 25 1 6.6933 12.0731 -0.2928 26 1 5.6495 10.1256 -1.2921 27 6 7.2016 7.9139 -1.9246 28 6 2.7207 3.3768 -1.1972 29 6 2.2636 2.0722 -1.1972 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 1.5636 2.1324 36 1 2.9035 3.8849 2.1324 37 1 2.6523 7.4295 -0.2527 38 1 1.8374 6.1761 -1.2183 39 1 1.5442 6.2798 0.5343 40 1 4.4489 5.0253 -1.8297 41 1 7.1903 5.3682 -3.1983 42 1 5.4191 5.2170 -3.0863 43 1 6.1943 6.1544 -5.2951 44 1 5.1202 7.2612 -4.4052 45 1 7.1019 8.4532 -5.3270 46 1 8.1709 7.3734 -4.4004 47 1 9.1219 12.3599 -1.5280 48 1 8.2189 7.5262 -1.8702 49 1 6.9985 8.5310 -1.0494 50 1 2.8975 3.8870 -2.1325 51 1 2.0840 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595425510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:35 Heat of formation + Delta-G solvation = -12.249128 kcal Electronic energy + Delta-G solvation = -28734.725331 eV Core-core repulsion = 25019.455492 eV Total energy + Delta-G solvation = -3715.269839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43508 -39.56932 -37.34772 -35.89268 -33.90247 -33.29864 -31.99779 -31.25629 -30.84971 -30.13475 -28.67715 -25.21267 -25.07381 -24.32412 -23.12925 -22.25111 -22.01800 -20.67599 -19.89403 -19.06339 -18.04407 -16.78892 -16.50692 -16.12526 -15.57638 -15.32011 -15.02734 -14.69855 -14.14907 -14.08567 -14.04788 -13.91112 -13.80750 -13.64219 -13.49171 -13.13870 -12.94017 -12.81183 -12.66707 -12.42902 -12.20384 -12.15340 -11.83258 -11.66607 -11.44726 -11.27093 -11.12007 -11.03557 -10.89514 -10.60324 -10.38233 -10.07752 -9.78695 -9.68172 -9.22242 -9.18365 -9.09308 -9.01170 -8.76803 -8.55886 -7.94842 -6.07646 -4.09153 1.02747 1.14148 2.96423 3.42309 3.46614 3.50452 3.59264 3.62766 4.15332 4.33881 4.46038 4.47542 4.53985 4.73529 4.78684 4.96951 5.08869 5.13787 5.17725 5.20033 5.24923 5.27264 5.31794 5.34887 5.44521 5.50140 5.55726 5.59744 5.72668 5.75685 5.80008 5.82923 5.88282 5.99320 6.10432 6.11772 6.16739 6.20751 6.32264 6.33345 6.41260 6.56977 6.62295 6.70754 6.72520 6.75487 6.90327 7.13780 7.35125 7.47598 7.75990 8.29064 8.50694 8.94757 8.97184 9.54120 11.04196 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.002761 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.847051 B =10138.214124 C =10950.887940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.088 4.088 7 C 0.199 3.801 8 H 0.096 0.904 9 C -0.158 4.158 10 N -0.747 5.747 11 C 0.703 3.297 12 O -0.592 6.592 13 N -0.624 5.624 14 C 0.116 3.884 15 C -0.136 4.136 16 C -0.099 4.099 17 C 0.004 3.996 18 H 0.030 0.970 19 C -0.516 4.516 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.882 3.118 24 H -0.272 1.272 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.120 3.880 28 C -0.110 4.110 29 C -0.114 4.114 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.392 0.608 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.265 0.735 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.817 -23.936 2.013 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.089 4.089 7 C 0.094 3.906 8 H 0.114 0.886 9 C -0.216 4.216 10 N -0.407 5.407 11 C 0.405 3.595 12 O -0.470 6.470 13 N -0.361 5.361 14 C -0.007 4.007 15 C -0.174 4.174 16 C -0.137 4.137 17 C -0.016 4.016 18 H 0.048 0.952 19 C -0.554 4.554 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.711 3.289 24 H -0.198 1.198 25 H -0.225 1.225 26 H -0.189 1.189 27 C -0.001 4.001 28 C -0.129 4.129 29 C -0.132 4.132 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.669 -23.249 2.843 28.748 hybrid contribution -0.573 -0.207 0.410 0.735 sum -17.242 -23.456 3.253 29.293 Atomic orbital electron populations 1.21749 0.94695 1.01682 1.02283 1.20547 0.96195 0.92667 1.02851 1.19911 0.99158 0.96270 0.93233 1.20997 0.99960 0.94722 0.97577 1.21011 0.99092 0.94640 0.97538 1.19990 0.99791 0.95444 0.93677 1.19577 0.88210 0.90200 0.92648 0.88572 1.22188 0.97413 1.00237 1.01811 1.45450 1.32602 1.37273 1.25359 1.15920 0.79212 0.80716 0.83649 1.90895 1.74741 1.51392 1.29963 1.47661 1.38313 1.32469 1.17615 1.21548 1.00911 0.92202 0.86086 1.21989 1.00888 0.98443 0.96108 1.21422 0.96761 0.95881 0.99648 1.19507 0.98356 0.93511 0.90200 0.95227 1.20949 1.14990 1.09756 1.09676 0.90491 1.25049 0.95127 0.94951 0.97902 1.69896 1.33589 1.16186 1.33718 0.86957 0.82888 0.76018 0.82992 1.19817 1.22460 1.18931 1.22487 0.90086 0.85814 1.01757 1.20911 0.99590 0.94868 0.97504 1.20982 0.99961 0.94684 0.97582 0.92519 0.92425 0.92544 0.91044 0.91068 0.86045 0.85720 0.91413 0.92478 0.91715 0.77068 0.91569 0.91911 0.91736 0.92043 0.92245 0.92499 0.92546 0.91833 0.90286 0.86216 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.44 16 2 C -0.09 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.09 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 5 C -0.10 -1.01 9.67 -39.58 -0.38 -1.40 16 6 C -0.09 -0.94 4.95 -104.62 -0.52 -1.46 16 7 C 0.20 2.56 2.82 -69.08 -0.19 2.37 16 8 H 0.10 1.41 7.37 -51.93 -0.38 1.02 16 9 C -0.16 -1.94 9.46 37.16 0.35 -1.59 16 10 N -0.75 -10.71 4.94 -59.81 -0.30 -11.01 16 11 C 0.70 13.62 8.26 -86.92 -0.72 12.90 16 12 O -0.59 -13.98 15.41 5.29 0.08 -13.90 16 13 N -0.62 -11.87 2.97 -178.49 -0.53 -12.40 16 14 C 0.12 1.65 6.43 -3.71 -0.02 1.62 16 15 C -0.14 -1.98 6.08 -26.61 -0.16 -2.14 16 16 C -0.10 -1.87 5.11 -26.69 -0.14 -2.00 16 17 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 18 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 19 C -0.52 -14.41 9.15 -34.44 -0.31 -14.72 16 20 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 21 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 22 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 23 Si 0.88 23.71 24.32 -169.99 -4.13 19.57 16 24 H -0.27 -7.43 6.92 56.52 0.39 -7.04 16 25 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 26 H -0.26 -7.12 6.53 56.52 0.37 -6.75 16 27 C 0.12 2.75 5.10 -3.71 -0.02 2.73 16 28 C -0.11 -1.04 9.05 -39.58 -0.36 -1.39 16 29 C -0.11 -0.96 9.70 -39.58 -0.38 -1.34 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.39 4.58 4.34 -40.82 -0.18 4.40 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.69 5.56 -51.93 -0.29 0.40 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.11 8.14 -51.94 -0.42 0.69 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.08 2.05 2.36 -51.93 -0.12 1.93 16 50 H 0.12 0.99 6.93 -52.49 -0.36 0.62 16 51 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -34.05 394.11 -10.50 -44.56 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.49 Total: 2.35 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.85 Total: -8.19 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.05 Total: -50.33 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.13 Total: 19.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.05 -10.50 -44.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.308 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds