Wall clock time and date at job start Tue Mar 31 2020 16:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46861 * 2 1 4 4 C 1.38234 * 119.99740 * 90.00000 * 3 2 1 5 5 C 1.38234 * 119.99696 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00221 * 359.95677 * 5 4 3 7 7 C 1.50695 * 120.00357 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47347 * 20.00349 * 7 6 5 9 9 C 1.53000 * 109.47594 * 260.00048 * 7 6 5 10 10 N 1.46506 * 109.47241 * 139.99704 * 7 6 5 11 11 C 1.34770 * 120.00206 * 204.99956 * 10 7 6 12 12 O 1.21584 * 120.00098 * 5.08301 * 11 10 7 13 13 N 1.34777 * 119.99990 * 185.07826 * 11 10 7 14 14 C 1.46930 * 120.63129 * 354.94493 * 13 11 10 15 15 C 1.53193 * 108.77767 * 126.41238 * 14 13 11 16 16 C 1.53037 * 109.31528 * 54.63289 * 15 14 13 17 17 C 1.53040 * 109.53789 * 298.63873 * 16 15 14 18 18 H 1.09004 * 109.50136 * 301.41055 * 17 16 15 19 19 C 1.50699 * 109.52472 * 181.33086 * 17 16 15 20 20 H 1.08000 * 120.00242 * 0.07658 * 19 17 16 21 21 C 1.37877 * 120.00064 * 180.08106 * 19 17 16 22 22 N 1.31519 * 120.00024 * 179.97438 * 21 19 17 23 23 Si 1.86801 * 120.00307 * 359.97438 * 21 19 17 24 24 H 1.48498 * 109.46797 * 89.99921 * 23 21 19 25 25 H 1.48498 * 109.47294 * 210.00251 * 23 21 19 26 26 H 1.48505 * 109.46863 * 330.00468 * 23 21 19 27 27 C 1.46931 * 120.63305 * 174.96235 * 13 11 10 28 28 C 1.38243 * 119.99943 * 0.27461 * 6 5 4 29 29 C 1.38232 * 119.99701 * 359.51823 * 28 6 5 30 30 H 1.08994 * 109.47346 * 60.00135 * 1 2 3 31 31 H 1.08997 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46988 * 299.99241 * 1 2 3 33 33 H 1.08997 * 109.47388 * 240.00097 * 2 1 3 34 34 H 1.09002 * 109.47067 * 119.99821 * 2 1 3 35 35 H 1.07992 * 120.00567 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00212 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47229 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47040 * 300.00058 * 9 7 6 39 39 H 1.08994 * 109.46767 * 60.00089 * 9 7 6 40 40 H 0.97005 * 119.99639 * 25.00940 * 10 7 6 41 41 H 1.09005 * 109.58466 * 246.20165 * 14 13 11 42 42 H 1.08996 * 109.58242 * 6.47693 * 14 13 11 43 43 H 1.08998 * 109.49494 * 174.58731 * 15 14 13 44 44 H 1.09007 * 109.49200 * 294.68515 * 15 14 13 45 45 H 1.08989 * 109.46318 * 178.61521 * 16 15 14 46 46 H 1.09003 * 109.45750 * 58.65143 * 16 15 14 47 47 H 0.97004 * 120.00216 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58557 * 113.79719 * 27 13 11 49 49 H 1.08999 * 109.70038 * 353.44685 * 27 13 11 50 50 H 1.08000 * 120.00198 * 179.72709 * 28 6 5 51 51 H 1.07996 * 120.00214 * 180.25537 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4579 5.4476 0.0000 8 1 3.9093 5.6734 0.9660 9 6 2.2889 6.4019 -0.2522 10 7 4.4590 5.6117 -1.0570 11 6 5.3937 6.5773 -0.9559 12 8 5.4644 7.2516 0.0533 13 7 6.2502 6.7953 -1.9734 14 6 6.2506 5.9186 -3.1525 15 6 6.0992 6.7819 -4.4090 16 6 7.1922 7.8530 -4.4218 17 6 7.0396 8.7548 -3.1948 18 1 6.0517 9.2156 -3.2024 19 6 8.0958 9.8292 -3.2248 20 1 8.8051 9.8667 -4.0384 21 6 8.1569 10.7644 -2.2134 22 7 9.0791 11.7017 -2.2394 23 14 6.9299 10.7000 -0.8064 24 1 7.4716 9.8501 0.2842 25 1 6.6933 12.0731 -0.2928 26 1 5.6495 10.1256 -1.2921 27 6 7.2016 7.9139 -1.9246 28 6 2.7207 3.3768 -1.1972 29 6 2.2636 2.0722 -1.1972 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 1.5636 2.1324 36 1 2.9035 3.8849 2.1324 37 1 2.6523 7.4295 -0.2527 38 1 1.8374 6.1761 -1.2183 39 1 1.5442 6.2798 0.5343 40 1 4.4489 5.0253 -1.8297 41 1 7.1903 5.3682 -3.1983 42 1 5.4191 5.2170 -3.0863 43 1 6.1943 6.1544 -5.2951 44 1 5.1202 7.2612 -4.4052 45 1 7.1019 8.4532 -5.3270 46 1 8.1709 7.3734 -4.4004 47 1 9.1219 12.3599 -1.5280 48 1 8.2189 7.5262 -1.8702 49 1 6.9985 8.5310 -1.0494 50 1 2.8975 3.8870 -2.1325 51 1 2.0840 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595425510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:33 Heat of formation + Delta-G solvation = -32.328264 kcal Electronic energy + Delta-G solvation = -28735.596027 eV Core-core repulsion = 25019.455492 eV Total energy + Delta-G solvation = -3716.140536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.68664 -40.49171 -38.77783 -36.99667 -35.42372 -34.52208 -33.64958 -32.32815 -31.90774 -31.42940 -29.42158 -27.04277 -26.45382 -25.21485 -23.82256 -23.56202 -23.11693 -21.68139 -21.13758 -20.53422 -19.39883 -18.87946 -17.67434 -17.15889 -16.56682 -16.51818 -16.31711 -15.97554 -15.48337 -15.33972 -15.32893 -14.96210 -14.84948 -14.67473 -14.50209 -14.45932 -14.10796 -14.07298 -13.80674 -13.60930 -13.38066 -13.24683 -13.04272 -12.88226 -12.51718 -12.33532 -12.32223 -12.13720 -12.06655 -11.85212 -11.67765 -11.62075 -11.59184 -11.39226 -11.06485 -10.99600 -10.80420 -10.32425 -9.83682 -9.50904 -9.43325 -8.39627 -6.40792 0.33229 0.48710 1.22368 1.29048 1.41109 1.61558 2.09376 2.20458 2.77555 2.92133 2.99690 3.54067 3.86692 3.94602 3.95461 4.04188 4.10637 4.13271 4.18312 4.26472 4.39274 4.43456 4.50478 4.52662 4.57549 4.59310 4.63672 4.69619 4.71021 4.72235 4.85518 4.86472 4.98765 5.05523 5.07003 5.12432 5.12740 5.17382 5.20259 5.21882 5.39190 5.40075 5.41262 5.49520 5.53164 5.61749 5.68855 5.70841 5.73141 5.96621 6.08500 6.26634 6.67894 6.96576 7.24751 7.50927 8.76292 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.002761 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.847051 B =10138.214124 C =10950.887940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.101 4.101 7 C 0.200 3.800 8 H 0.071 0.929 9 C -0.152 4.152 10 N -0.725 5.725 11 C 0.697 3.303 12 O -0.642 6.642 13 N -0.628 5.628 14 C 0.109 3.891 15 C -0.126 4.126 16 C -0.098 4.098 17 C 0.004 3.996 18 H 0.013 0.987 19 C -0.509 4.509 20 H 0.053 0.947 21 C 0.029 3.971 22 N -0.936 5.936 23 Si 0.939 3.061 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.127 3.873 28 C -0.114 4.114 29 C -0.117 4.117 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.408 0.592 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.267 0.733 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.133 0.867 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 -27.798 0.675 33.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.102 4.102 7 C 0.095 3.905 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.385 5.385 11 C 0.399 3.601 12 O -0.524 6.524 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.164 4.164 16 C -0.135 4.135 17 C -0.015 4.015 18 H 0.031 0.969 19 C -0.547 4.547 20 H 0.071 0.929 21 C -0.170 4.170 22 N -0.576 5.576 23 Si 0.769 3.231 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.003 3.997 28 C -0.132 4.132 29 C -0.134 4.134 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.248 0.752 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.151 0.849 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.827 -27.170 1.461 33.088 hybrid contribution 0.073 0.891 0.795 1.197 sum -18.754 -26.279 2.256 32.363 Atomic orbital electron populations 1.21736 0.94272 1.02357 1.01907 1.20596 0.96451 0.91409 1.03711 1.20237 0.98110 0.97233 0.93033 1.21218 0.99625 0.94274 0.98704 1.21140 0.99509 0.95356 0.97473 1.19767 1.01525 0.94112 0.94768 1.19583 0.87676 0.92221 0.90998 0.91067 1.22124 0.97522 0.98006 1.03360 1.45262 1.31286 1.35796 1.26128 1.16143 0.79799 0.81181 0.83023 1.90858 1.76069 1.53434 1.32067 1.47567 1.37491 1.32050 1.19254 1.21944 1.03619 0.91957 0.83727 1.21935 0.98709 0.97578 0.98131 1.21366 0.98914 0.96417 0.96828 1.19439 0.95569 0.93396 0.93144 0.96879 1.21319 1.14888 1.10511 1.08030 0.92919 1.25604 0.96332 0.95191 0.99840 1.69983 1.35381 1.17426 1.34854 0.86056 0.81012 0.75392 0.80645 1.21141 1.22171 1.19492 1.21982 0.90981 0.86953 0.99736 1.21068 0.99418 0.95373 0.97336 1.21260 0.99254 0.94333 0.98603 0.92771 0.91277 0.93052 0.90037 0.90427 0.84520 0.85681 0.94731 0.90911 0.90065 0.75197 0.89818 0.87966 0.87242 0.92311 0.92442 0.92167 0.92386 0.92123 0.93529 0.84910 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 71.98 0.71 -0.47 16 2 C -0.08 -0.75 6.06 29.85 0.18 -0.57 16 3 C -0.09 -1.14 5.13 -19.86 -0.10 -1.25 16 4 C -0.12 -1.79 9.70 22.27 0.22 -1.58 16 5 C -0.12 -2.11 9.67 22.27 0.22 -1.89 16 6 C -0.10 -1.96 4.95 -19.87 -0.10 -2.06 16 7 C 0.20 5.01 2.82 44.24 0.12 5.13 16 8 H 0.07 2.15 7.37 -2.39 -0.02 2.13 16 9 C -0.15 -3.61 9.46 71.98 0.68 -2.93 16 10 N -0.72 -19.55 4.94 -461.42 -2.28 -21.83 16 11 C 0.70 26.63 8.26 179.06 1.48 28.11 16 12 O -0.64 -31.15 15.41 -3.98 -0.06 -31.21 16 13 N -0.63 -23.04 2.97 -836.89 -2.49 -25.53 16 14 C 0.11 2.66 6.43 86.36 0.56 3.22 16 15 C -0.13 -3.15 6.08 30.67 0.19 -2.96 16 16 C -0.10 -3.48 5.11 30.62 0.16 -3.32 16 17 C 0.00 0.20 1.84 -11.46 -0.02 0.18 16 18 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 19 C -0.51 -29.11 9.15 25.60 0.23 -28.88 16 20 H 0.05 3.22 7.99 -2.91 -0.02 3.19 16 21 C 0.03 1.76 5.45 84.65 0.46 2.22 16 22 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 23 Si 0.94 51.44 24.32 68.60 1.67 53.11 16 24 H -0.28 -15.99 6.92 99.48 0.69 -15.31 16 25 H -0.29 -15.73 7.11 99.48 0.71 -15.02 16 26 H -0.27 -14.80 6.53 99.48 0.65 -14.15 16 27 C 0.13 5.84 5.10 86.36 0.44 6.28 16 28 C -0.11 -1.77 9.05 22.27 0.20 -1.57 16 29 C -0.12 -1.54 9.70 22.27 0.22 -1.32 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.13 2.14 8.04 -2.91 -0.02 2.12 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 8.10 4.34 -92.70 -0.40 7.70 16 41 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.10 1.70 5.56 -2.39 -0.01 1.69 16 43 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 48 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 49 H 0.05 2.48 2.36 -2.39 -0.01 2.47 16 50 H 0.13 1.63 6.93 -2.91 -0.02 1.61 16 51 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -78.10 394.11 3.41 -74.69 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.43 Total: 13.71 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.84 Total: -3.66 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.47 Total: -106.63 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.06 Total: -31.21 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 1.67 Total: 53.11 kcal Total: -78.10 3.41 -74.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.365 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds