Wall clock time and date at job start Tue Mar 31 2020 16:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46976 * 2 1 4 4 C 1.38230 * 119.99674 * 269.72343 * 3 2 1 5 5 C 1.38236 * 120.00144 * 179.81106 * 4 3 2 6 6 C 1.38241 * 119.99831 * 0.41529 * 5 4 3 7 7 C 1.50695 * 120.00157 * 179.79019 * 6 5 4 8 8 H 1.09004 * 109.47190 * 200.02380 * 7 6 5 9 9 C 1.53001 * 109.46889 * 80.02410 * 7 6 5 10 10 N 1.46500 * 109.47181 * 320.02339 * 7 6 5 11 11 C 1.34778 * 119.99856 * 204.99690 * 10 7 6 12 12 O 1.21586 * 120.00192 * 354.93820 * 11 10 7 13 13 N 1.34779 * 119.99708 * 174.93500 * 11 10 7 14 14 C 1.46923 * 120.63157 * 5.03526 * 13 11 10 15 15 C 1.53194 * 108.77486 * 233.58770 * 14 13 11 16 16 C 1.53034 * 109.31347 * 305.36284 * 15 14 13 17 17 C 1.53042 * 109.53854 * 61.36512 * 16 15 14 18 18 H 1.09002 * 109.49632 * 58.58507 * 17 16 15 19 19 C 1.50703 * 109.49880 * 178.68542 * 17 16 15 20 20 H 1.07994 * 120.00056 * 359.97438 * 19 17 16 21 21 C 1.37878 * 119.99632 * 180.02562 * 19 17 16 22 22 N 1.31518 * 120.00188 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99830 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47228 * 60.00082 * 23 21 19 25 25 H 1.48506 * 109.47404 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47238 * 300.00209 * 23 21 19 27 27 C 1.46929 * 120.62772 * 184.75681 * 13 11 10 28 28 C 1.38236 * 119.99636 * 359.81925 * 6 5 4 29 29 C 1.38231 * 120.00292 * 89.99497 * 3 2 1 30 30 H 1.09003 * 109.46865 * 60.00599 * 1 2 3 31 31 H 1.09001 * 109.47651 * 300.00156 * 1 2 3 32 32 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46865 * 119.99401 * 2 1 3 34 34 H 1.08991 * 109.47565 * 240.00014 * 2 1 3 35 35 H 1.08009 * 120.00283 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.00505 * 180.21237 * 5 4 3 37 37 H 1.09006 * 109.46897 * 179.97438 * 9 7 6 38 38 H 1.08992 * 109.47415 * 300.00293 * 9 7 6 39 39 H 1.08998 * 109.47181 * 60.00230 * 9 7 6 40 40 H 0.96999 * 119.99898 * 25.00435 * 10 7 6 41 41 H 1.09006 * 109.59119 * 353.37330 * 14 13 11 42 42 H 1.08994 * 109.58704 * 113.65512 * 14 13 11 43 43 H 1.08999 * 109.49606 * 65.31788 * 15 14 13 44 44 H 1.09005 * 109.49687 * 185.41649 * 15 14 13 45 45 H 1.08994 * 109.46611 * 181.38716 * 16 15 14 46 46 H 1.09007 * 109.45970 * 301.36147 * 16 15 14 47 47 H 0.97003 * 119.99436 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58197 * 246.19704 * 27 13 11 49 49 H 1.08998 * 109.58632 * 6.62427 * 27 13 11 50 50 H 1.07999 * 119.99728 * 179.97438 * 28 6 5 51 51 H 1.08002 * 119.99996 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7251 3.3751 -1.1973 6 6 2.9546 4.0272 -0.0001 7 6 3.4573 5.4479 -0.0002 8 1 3.9093 5.6734 0.9658 9 6 2.2883 6.4024 -0.2516 10 7 4.4578 5.6118 -1.0577 11 6 5.3929 6.5771 -0.9569 12 8 5.3514 7.3700 -0.0360 13 7 6.3741 6.6635 -1.8768 14 6 6.3762 5.7843 -3.0539 15 6 7.7284 5.0686 -3.1323 16 6 8.8522 6.1073 -3.1217 17 6 8.8017 6.9027 -1.8152 18 1 8.9020 6.2213 -0.9704 19 6 9.9283 7.9034 -1.7917 20 1 10.6125 7.9659 -2.6249 21 6 10.0861 8.7384 -0.7059 22 7 9.2537 8.6612 0.3094 23 14 11.4829 9.9783 -0.6764 24 1 11.3444 10.9075 -1.8264 25 1 11.4341 10.7490 0.5920 26 1 12.7813 9.2636 -0.7711 27 6 7.4587 7.6430 -1.7247 28 6 2.7233 3.3759 1.1970 29 6 2.2626 2.0726 1.1971 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 2.0927 1.5597 -2.1325 36 1 2.9061 3.8839 -2.1325 37 1 2.6519 7.4301 -0.2512 38 1 1.8363 6.1769 -1.2174 39 1 1.5440 6.2805 0.5352 40 1 4.4472 5.0256 -1.8305 41 1 5.5779 5.0478 -2.9614 42 1 6.2223 6.3788 -3.9544 43 1 7.8387 4.4044 -2.2750 44 1 7.7794 4.4869 -4.0527 45 1 9.8146 5.6020 -3.2022 46 1 8.7269 6.7864 -3.9652 47 1 9.3646 9.2490 1.0731 48 1 7.3937 8.3863 -2.5194 49 1 7.3747 8.1335 -0.7549 50 1 2.9030 3.8852 2.1323 51 1 2.0822 1.5637 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595425511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:39 Heat of formation + Delta-G solvation = -19.366790 kcal Electronic energy + Delta-G solvation = -28592.360344 eV Core-core repulsion = 24876.781860 eV Total energy + Delta-G solvation = -3715.578484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21338 -39.32269 -37.05182 -35.67676 -33.72192 -33.22868 -31.82148 -31.13057 -30.48652 -29.54204 -28.55241 -25.06880 -24.84454 -24.16312 -23.00600 -22.14749 -21.76803 -20.56846 -19.79117 -18.87014 -17.70886 -16.54281 -16.06720 -15.93172 -15.42340 -15.05670 -14.80379 -14.51437 -14.15011 -14.00075 -13.91517 -13.72646 -13.62288 -13.39263 -13.33624 -13.05040 -12.65601 -12.58093 -12.44574 -12.15403 -12.03836 -11.82162 -11.71868 -11.56713 -11.31127 -11.02400 -10.96130 -10.87496 -10.76262 -10.49984 -10.36379 -10.19462 -9.84270 -9.41042 -9.06959 -9.06636 -8.93298 -8.80714 -8.61141 -8.38433 -7.59921 -5.95042 -4.03920 1.14916 1.25782 3.23276 3.35407 3.40621 3.41913 3.61905 3.90280 4.40777 4.45506 4.49456 4.57684 4.66587 4.84629 4.88488 5.05167 5.22887 5.27104 5.29358 5.33382 5.34981 5.41528 5.44957 5.53639 5.57746 5.64075 5.65181 5.72380 5.82820 5.87065 5.92169 5.98929 6.03213 6.18906 6.22666 6.32157 6.34189 6.43960 6.45445 6.62234 6.70006 6.83588 6.85126 6.91795 7.02142 7.10752 7.37783 7.54445 7.78602 7.96790 8.09930 8.44534 8.63529 8.99361 9.30494 9.61308 11.10141 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002562 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.084747 B =10926.354947 C =11404.640725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.087 4.087 7 C 0.201 3.799 8 H 0.094 0.906 9 C -0.156 4.156 10 N -0.751 5.751 11 C 0.702 3.298 12 O -0.583 6.583 13 N -0.623 5.623 14 C 0.116 3.884 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.028 0.972 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.130 3.870 28 C -0.104 4.104 29 C -0.115 4.115 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.389 0.611 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.038 0.962 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.732 -15.796 -3.381 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.088 4.088 7 C 0.096 3.904 8 H 0.112 0.888 9 C -0.215 4.215 10 N -0.411 5.411 11 C 0.404 3.596 12 O -0.460 6.460 13 N -0.359 5.359 14 C -0.008 4.008 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.046 0.954 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.009 3.991 28 C -0.123 4.123 29 C -0.133 4.133 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.766 -15.095 -2.498 23.447 hybrid contribution 0.775 0.344 -0.426 0.949 sum -16.991 -14.751 -2.924 22.690 Atomic orbital electron populations 1.21747 0.94773 1.01603 1.02245 1.20538 0.96125 0.92742 1.02824 1.19887 0.99350 0.96221 0.93255 1.20966 1.00076 0.94717 0.97515 1.20897 0.99631 0.94840 0.97511 1.20032 0.99476 0.95633 0.93613 1.19526 0.88331 0.89901 0.92667 0.88796 1.22171 0.97352 1.00493 1.01439 1.45490 1.32961 1.37486 1.25195 1.15929 0.79392 0.81370 0.82926 1.90910 1.76714 1.43392 1.35016 1.47783 1.26134 1.39689 1.22309 1.21479 0.97414 0.92792 0.89137 1.21942 0.95700 0.98655 1.00840 1.21613 0.95968 0.96602 1.00555 1.19059 0.92434 0.94428 0.91995 0.95357 1.21037 1.12275 1.19106 1.03613 0.92465 1.25058 0.96138 0.97325 0.95520 1.69894 1.36210 1.38396 1.07143 0.86662 0.82655 0.81410 0.77281 1.20260 1.21285 1.20337 1.22264 0.83637 0.88972 1.04213 1.21024 0.99020 0.94629 0.97610 1.20990 0.99990 0.94741 0.97534 0.92562 0.92552 0.92491 0.91083 0.91090 0.86162 0.86288 0.91205 0.92777 0.91998 0.77398 0.92368 0.92169 0.92190 0.92397 0.93092 0.93208 0.92625 0.94322 0.85995 0.85685 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.08 -0.59 6.07 -27.88 -0.17 -0.76 16 3 C -0.09 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.11 -1.07 9.70 -39.59 -0.38 -1.46 16 5 C -0.11 -1.15 9.06 -39.58 -0.36 -1.51 16 6 C -0.09 -1.02 4.95 -104.62 -0.52 -1.54 16 7 C 0.20 2.82 2.74 -69.08 -0.19 2.63 16 8 H 0.09 1.52 7.52 -51.93 -0.39 1.13 16 9 C -0.16 -1.98 9.46 37.16 0.35 -1.63 16 10 N -0.75 -11.74 4.94 -59.81 -0.30 -12.03 16 11 C 0.70 14.61 8.26 -86.91 -0.72 13.90 16 12 O -0.58 -14.68 15.45 5.29 0.08 -14.60 16 13 N -0.62 -12.81 2.97 -178.23 -0.53 -13.34 16 14 C 0.12 1.83 6.43 -3.71 -0.02 1.81 16 15 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 16 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 17 C 0.04 1.00 2.26 -91.42 -0.21 0.80 16 18 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -26.01 11.41 55.43 0.63 -25.37 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 3.21 5.41 -3.48 -0.02 3.19 16 28 C -0.10 -1.14 9.67 -39.58 -0.38 -1.52 16 29 C -0.11 -1.10 9.70 -39.59 -0.38 -1.49 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 1.09 6.91 -52.49 -0.36 0.73 16 37 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.39 5.10 4.33 -40.82 -0.18 4.92 16 41 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.12 3.54 5.18 -51.93 -0.27 3.27 16 50 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -32.22 401.08 -11.57 -43.80 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.63 Total: 6.06 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.86 Total: -7.02 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.19 Total: -50.75 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.22 -11.57 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.430 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds