Wall clock time and date at job start Tue Mar 31 2020 16:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46976 * 2 1 4 4 C 1.38230 * 119.99674 * 269.72343 * 3 2 1 5 5 C 1.38236 * 120.00144 * 179.81106 * 4 3 2 6 6 C 1.38241 * 119.99831 * 0.41529 * 5 4 3 7 7 C 1.50695 * 120.00157 * 179.79019 * 6 5 4 8 8 H 1.09004 * 109.47190 * 200.02380 * 7 6 5 9 9 C 1.53001 * 109.46889 * 80.02410 * 7 6 5 10 10 N 1.46500 * 109.47181 * 320.02339 * 7 6 5 11 11 C 1.34778 * 119.99856 * 204.99690 * 10 7 6 12 12 O 1.21586 * 120.00192 * 354.93820 * 11 10 7 13 13 N 1.34779 * 119.99708 * 174.93500 * 11 10 7 14 14 C 1.46923 * 120.63157 * 5.03526 * 13 11 10 15 15 C 1.53194 * 108.77486 * 233.58770 * 14 13 11 16 16 C 1.53034 * 109.31347 * 305.36284 * 15 14 13 17 17 C 1.53042 * 109.53854 * 61.36512 * 16 15 14 18 18 H 1.09002 * 109.49632 * 58.58507 * 17 16 15 19 19 C 1.50703 * 109.49880 * 178.68542 * 17 16 15 20 20 H 1.07994 * 120.00056 * 359.97438 * 19 17 16 21 21 C 1.37878 * 119.99632 * 180.02562 * 19 17 16 22 22 N 1.31518 * 120.00188 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99830 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47228 * 60.00082 * 23 21 19 25 25 H 1.48506 * 109.47404 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47238 * 300.00209 * 23 21 19 27 27 C 1.46929 * 120.62772 * 184.75681 * 13 11 10 28 28 C 1.38236 * 119.99636 * 359.81925 * 6 5 4 29 29 C 1.38231 * 120.00292 * 89.99497 * 3 2 1 30 30 H 1.09003 * 109.46865 * 60.00599 * 1 2 3 31 31 H 1.09001 * 109.47651 * 300.00156 * 1 2 3 32 32 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46865 * 119.99401 * 2 1 3 34 34 H 1.08991 * 109.47565 * 240.00014 * 2 1 3 35 35 H 1.08009 * 120.00283 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.00505 * 180.21237 * 5 4 3 37 37 H 1.09006 * 109.46897 * 179.97438 * 9 7 6 38 38 H 1.08992 * 109.47415 * 300.00293 * 9 7 6 39 39 H 1.08998 * 109.47181 * 60.00230 * 9 7 6 40 40 H 0.96999 * 119.99898 * 25.00435 * 10 7 6 41 41 H 1.09006 * 109.59119 * 353.37330 * 14 13 11 42 42 H 1.08994 * 109.58704 * 113.65512 * 14 13 11 43 43 H 1.08999 * 109.49606 * 65.31788 * 15 14 13 44 44 H 1.09005 * 109.49687 * 185.41649 * 15 14 13 45 45 H 1.08994 * 109.46611 * 181.38716 * 16 15 14 46 46 H 1.09007 * 109.45970 * 301.36147 * 16 15 14 47 47 H 0.97003 * 119.99436 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58197 * 246.19704 * 27 13 11 49 49 H 1.08998 * 109.58632 * 6.62427 * 27 13 11 50 50 H 1.07999 * 119.99728 * 179.97438 * 28 6 5 51 51 H 1.08002 * 119.99996 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7251 3.3751 -1.1973 6 6 2.9546 4.0272 -0.0001 7 6 3.4573 5.4479 -0.0002 8 1 3.9093 5.6734 0.9658 9 6 2.2883 6.4024 -0.2516 10 7 4.4578 5.6118 -1.0577 11 6 5.3929 6.5771 -0.9569 12 8 5.3514 7.3700 -0.0360 13 7 6.3741 6.6635 -1.8768 14 6 6.3762 5.7843 -3.0539 15 6 7.7284 5.0686 -3.1323 16 6 8.8522 6.1073 -3.1217 17 6 8.8017 6.9027 -1.8152 18 1 8.9020 6.2213 -0.9704 19 6 9.9283 7.9034 -1.7917 20 1 10.6125 7.9659 -2.6249 21 6 10.0861 8.7384 -0.7059 22 7 9.2537 8.6612 0.3094 23 14 11.4829 9.9783 -0.6764 24 1 11.3444 10.9075 -1.8264 25 1 11.4341 10.7490 0.5920 26 1 12.7813 9.2636 -0.7711 27 6 7.4587 7.6430 -1.7247 28 6 2.7233 3.3759 1.1970 29 6 2.2626 2.0726 1.1971 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 2.0927 1.5597 -2.1325 36 1 2.9061 3.8839 -2.1325 37 1 2.6519 7.4301 -0.2512 38 1 1.8363 6.1769 -1.2174 39 1 1.5440 6.2805 0.5352 40 1 4.4472 5.0256 -1.8305 41 1 5.5779 5.0478 -2.9614 42 1 6.2223 6.3788 -3.9544 43 1 7.8387 4.4044 -2.2750 44 1 7.7794 4.4869 -4.0527 45 1 9.8146 5.6020 -3.2022 46 1 8.7269 6.7864 -3.9652 47 1 9.3646 9.2490 1.0731 48 1 7.3937 8.3863 -2.5194 49 1 7.3747 8.1335 -0.7549 50 1 2.9030 3.8852 2.1323 51 1 2.0822 1.5637 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595425511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:37 Heat of formation + Delta-G solvation = -36.577974 kcal Electronic energy + Delta-G solvation = -28593.106677 eV Core-core repulsion = 24876.781860 eV Total energy + Delta-G solvation = -3716.324817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.52070 -40.41898 -38.58593 -36.90023 -35.35985 -34.44881 -33.48435 -31.97263 -31.75171 -31.15563 -29.38712 -27.03782 -26.22710 -25.17616 -23.79281 -23.48742 -23.04197 -21.69752 -21.11110 -20.42390 -19.22605 -18.28929 -17.54908 -16.92838 -16.61637 -16.31414 -16.23349 -16.01077 -15.31918 -15.23579 -15.17333 -14.81218 -14.63167 -14.49597 -14.43040 -14.21063 -14.09567 -14.05908 -13.58791 -13.48764 -13.31269 -13.03589 -12.84749 -12.68915 -12.49154 -12.31049 -12.27912 -12.23638 -12.04335 -11.84268 -11.66734 -11.63256 -11.59160 -11.22126 -10.95000 -10.83508 -10.50770 -10.21528 -9.82349 -9.47027 -9.25837 -8.09396 -6.26696 0.35216 0.49946 1.41000 1.42825 1.51158 1.78535 2.26613 2.42573 2.81201 3.05128 3.20344 3.58096 3.88137 3.95964 4.02534 4.12200 4.14999 4.21004 4.27332 4.32672 4.41385 4.53932 4.59062 4.59894 4.64671 4.69858 4.73714 4.76989 4.80083 4.83372 4.92337 5.06832 5.09203 5.10441 5.13607 5.20622 5.23735 5.26935 5.28272 5.33045 5.42197 5.47068 5.51851 5.57130 5.65147 5.73974 5.74354 5.89122 5.97881 6.09617 6.17347 6.36548 6.86268 7.13272 7.43147 7.68963 8.93866 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002562 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.084747 B =10926.354947 C =11404.640725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.102 4.102 7 C 0.202 3.798 8 H 0.062 0.938 9 C -0.148 4.148 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.637 6.637 13 N -0.628 5.628 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.016 1.016 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.144 3.856 28 C -0.119 4.119 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.405 0.595 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.259 0.741 48 H 0.034 0.966 49 H 0.074 0.926 50 H 0.123 0.877 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.773 -18.348 -6.031 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.134 4.134 5 C -0.132 4.132 6 C -0.102 4.102 7 C 0.097 3.903 8 H 0.080 0.920 9 C -0.206 4.206 10 N -0.389 5.389 11 C 0.397 3.603 12 O -0.519 6.519 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.142 4.142 17 C 0.020 3.980 18 H 0.002 0.998 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.554 5.554 23 Si 0.783 3.217 24 H -0.191 1.191 25 H -0.216 1.216 26 H -0.193 1.193 27 C 0.021 3.979 28 C -0.137 4.137 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.245 0.755 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.092 0.908 50 H 0.141 0.859 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.829 -17.711 -5.204 26.369 hybrid contribution 1.053 1.047 0.420 1.543 sum -17.777 -16.664 -4.784 24.831 Atomic orbital electron populations 1.21733 0.94148 1.02374 1.01936 1.20594 0.96555 0.91303 1.03689 1.20236 0.98183 0.97272 0.92979 1.21264 0.99222 0.94272 0.98629 1.21061 0.99456 0.95417 0.97265 1.19816 1.01329 0.94286 0.94810 1.19539 0.87953 0.92216 0.90619 0.92014 1.22081 0.97138 0.98227 1.03150 1.45268 1.31767 1.35866 1.25968 1.16172 0.80112 0.81775 0.82260 1.90870 1.78099 1.45685 1.37222 1.47685 1.24981 1.39790 1.23911 1.21855 0.98595 0.93066 0.87713 1.21898 0.94088 0.97583 1.02712 1.21504 0.97936 0.97220 0.97570 1.18987 0.92013 0.93811 0.93231 0.99798 1.21496 1.12984 1.19357 1.03593 0.91862 1.25928 0.98576 0.99430 0.95215 1.70107 1.38151 1.39393 1.07776 0.85609 0.79726 0.79033 0.77291 1.19108 1.21584 1.19264 1.21664 0.85182 0.89696 1.01357 1.21145 0.99644 0.95473 0.97463 1.21213 0.99635 0.94185 0.98769 0.92697 0.93056 0.91223 0.90504 0.90011 0.83766 0.84901 0.94255 0.90861 0.90325 0.75544 0.88595 0.90072 0.93398 0.87645 0.92965 0.92287 0.93208 0.94782 0.90790 0.85908 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.08 -0.91 6.07 29.85 0.18 -0.72 16 3 C -0.09 -1.35 5.13 -19.87 -0.10 -1.45 16 4 C -0.12 -1.80 9.70 22.27 0.22 -1.58 16 5 C -0.11 -2.08 9.06 22.27 0.20 -1.88 16 6 C -0.10 -2.31 4.95 -19.87 -0.10 -2.41 16 7 C 0.20 5.76 2.74 44.24 0.12 5.89 16 8 H 0.06 2.16 7.52 -2.38 -0.02 2.14 16 9 C -0.15 -3.78 9.46 71.98 0.68 -3.10 16 10 N -0.73 -22.60 4.94 -461.41 -2.28 -24.88 16 11 C 0.70 29.92 8.26 179.05 1.48 31.40 16 12 O -0.64 -34.39 15.45 -3.99 -0.06 -34.45 16 13 N -0.63 -26.13 2.97 -836.05 -2.48 -28.61 16 14 C 0.11 3.17 6.43 86.36 0.56 3.73 16 15 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 16 C -0.10 -4.08 5.10 30.62 0.16 -3.92 16 17 C 0.04 2.01 2.26 -11.31 -0.03 1.99 16 18 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 19 C -0.54 -30.02 8.56 25.60 0.22 -29.80 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.01 0.45 5.30 84.65 0.45 0.90 16 22 N -0.92 -57.16 11.41 21.45 0.24 -56.92 16 23 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.14 7.43 5.41 86.51 0.47 7.90 16 28 C -0.12 -2.55 9.67 22.27 0.22 -2.33 16 29 C -0.12 -2.12 9.70 22.27 0.22 -1.91 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.75 8.09 -2.39 -0.02 0.74 16 34 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.13 1.97 6.91 -2.91 -0.02 1.95 16 37 H 0.04 1.24 8.09 -2.38 -0.02 1.22 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.40 9.70 4.33 -92.71 -0.40 9.30 16 41 H 0.10 2.04 5.57 -2.38 -0.01 2.03 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 2.23 8.14 -2.38 -0.02 2.22 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.07 4.59 5.18 -2.39 -0.01 4.58 16 50 H 0.12 2.56 8.04 -2.91 -0.02 2.54 16 51 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -76.37 401.08 3.78 -72.58 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.50 Total: 26.67 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.83 Total: -1.49 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.51 Total: -110.40 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.06 Total: -34.45 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -76.37 3.78 -72.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.006 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds