Wall clock time and date at job start Tue Mar 31 2020 16:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47152 * 2 1 4 4 C 1.38240 * 119.99998 * 269.72950 * 3 2 1 5 5 C 1.38230 * 120.00168 * 179.81203 * 4 3 2 6 6 C 1.38241 * 119.99729 * 0.41504 * 5 4 3 7 7 C 1.50695 * 119.99688 * 179.78994 * 6 5 4 8 8 C 1.53004 * 109.47685 * 270.02471 * 7 6 5 9 9 N 1.46498 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99743 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99948 * 354.89349 * 10 9 8 12 12 N 1.34777 * 119.99709 * 174.89936 * 10 9 8 13 13 C 1.46924 * 120.63416 * 4.74368 * 12 10 9 14 14 C 1.52754 * 109.00969 * 233.58578 * 13 12 10 15 15 C 1.53040 * 109.38642 * 305.59035 * 14 13 12 16 16 C 1.53039 * 109.53861 * 61.23652 * 15 14 13 17 17 H 1.08998 * 109.49599 * 58.58987 * 16 15 14 18 18 C 1.50700 * 109.49861 * 178.68713 * 16 15 14 19 19 H 1.07997 * 119.99828 * 5.23456 * 18 16 15 20 20 C 1.37876 * 119.99872 * 185.24586 * 18 16 15 21 21 N 1.31513 * 120.00279 * 355.11727 * 20 18 16 22 22 Si 1.86809 * 119.99713 * 175.12350 * 20 18 16 23 23 H 1.48503 * 109.47100 * 94.99397 * 22 20 18 24 24 H 1.48500 * 109.46688 * 214.99234 * 22 20 18 25 25 H 1.48497 * 109.46976 * 334.99380 * 22 20 18 26 26 C 1.46928 * 120.62702 * 185.02664 * 12 10 9 27 27 C 1.38227 * 120.00064 * 359.81808 * 6 5 4 28 28 C 1.38235 * 120.00271 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.46901 * 299.99909 * 1 2 3 30 30 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47673 * 59.99737 * 1 2 3 32 32 H 1.08997 * 109.47322 * 120.00581 * 2 1 3 33 33 H 1.09009 * 109.46901 * 240.00091 * 2 1 3 34 34 H 1.08000 * 119.99873 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00383 * 180.20953 * 5 4 3 36 36 H 1.09004 * 109.47283 * 30.02973 * 7 6 5 37 37 H 1.09009 * 109.46956 * 150.02358 * 7 6 5 38 38 H 1.08996 * 109.46861 * 300.00569 * 8 7 6 39 39 H 1.08999 * 109.46565 * 60.00200 * 8 7 6 40 40 H 0.97003 * 120.00216 * 359.97438 * 9 8 7 41 41 H 1.09002 * 109.58536 * 353.42099 * 13 12 10 42 42 H 1.09003 * 109.58383 * 113.84314 * 13 12 10 43 43 H 1.08997 * 109.56363 * 185.55098 * 14 13 12 44 44 H 1.09001 * 109.38764 * 65.51582 * 14 13 12 45 45 H 1.09002 * 109.45799 * 301.21980 * 15 14 13 46 46 H 1.09001 * 109.45105 * 181.25189 * 15 14 13 47 47 H 0.96999 * 119.99848 * 180.02562 * 21 20 18 48 48 H 1.08991 * 109.58649 * 246.15443 * 26 12 10 49 49 H 1.09001 * 109.58531 * 6.58124 * 26 12 10 50 50 H 1.07998 * 120.00308 * 179.97438 * 27 6 5 51 51 H 1.07991 * 120.00481 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7251 3.3751 -1.1972 6 6 2.9547 4.0271 0.0000 7 6 3.4575 5.4477 -0.0001 8 6 4.9875 5.4473 0.0006 9 7 5.4762 6.8284 0.0011 10 6 6.8014 7.0742 0.0013 11 8 7.5904 6.1539 0.0947 12 7 7.2518 8.3403 -0.1020 13 6 6.3131 9.4705 -0.1111 14 6 6.5808 10.3297 -1.3454 15 6 8.0558 10.7371 -1.3705 16 6 8.9314 9.4846 -1.4526 17 1 8.6748 8.9194 -2.3486 18 6 10.3823 9.8880 -1.5098 19 1 10.6584 10.9267 -1.4046 20 6 11.3570 8.9309 -1.6966 21 7 11.0306 7.6573 -1.7287 22 14 13.1414 9.4433 -1.9039 23 1 13.8305 9.3800 -0.5899 24 1 13.8121 8.5253 -2.8592 25 1 13.2001 10.8317 -2.4272 26 6 8.6906 8.6161 -0.2138 27 6 2.7235 3.3757 1.1970 28 6 2.2624 2.0726 1.1971 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 2.0918 1.5601 -2.1325 35 1 2.9061 3.8839 -2.1326 36 1 3.0947 5.9615 -0.8904 37 1 3.0938 5.9618 0.8896 38 1 5.3502 4.9335 0.8908 39 1 5.3510 4.9332 -0.8891 40 1 4.8461 7.5659 0.0006 41 1 5.2901 9.0955 -0.1435 42 1 6.4559 10.0714 0.7871 43 1 5.9572 11.2230 -1.3105 44 1 6.3463 9.7571 -2.2427 45 1 8.2957 11.2889 -0.4616 46 1 8.2432 11.3686 -2.2389 47 1 11.7164 6.9840 -1.8597 48 1 9.0313 9.1458 0.6757 49 1 9.2359 7.6776 -0.3140 50 1 2.9033 3.8849 2.1324 51 1 2.0822 1.5636 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595515939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:09 Heat of formation + Delta-G solvation = -25.934144 kcal Electronic energy + Delta-G solvation = -27588.376774 eV Core-core repulsion = 23872.513508 eV Total energy + Delta-G solvation = -3715.863266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90958 -39.52164 -36.97806 -35.67855 -34.13865 -33.26289 -31.83951 -31.17110 -31.10296 -29.73315 -27.93268 -25.08459 -24.83371 -23.67553 -22.92387 -22.32031 -21.76369 -20.67366 -20.03735 -18.74049 -17.51040 -16.37218 -16.19251 -16.04980 -15.78265 -15.18624 -15.05242 -14.58697 -14.14711 -14.12799 -13.87548 -13.75635 -13.70656 -13.49583 -13.39076 -13.20646 -12.71510 -12.56834 -12.40357 -12.18662 -12.08133 -11.89105 -11.64726 -11.60305 -11.26914 -11.05144 -10.99795 -10.98376 -10.85107 -10.49663 -10.36659 -10.22462 -9.83353 -9.41507 -9.09015 -9.05139 -8.90258 -8.69196 -8.68662 -8.42678 -7.60096 -5.96157 -4.04481 1.12486 1.23968 3.23296 3.33915 3.40775 3.43506 3.57699 3.90794 4.36439 4.46534 4.50689 4.54035 4.77768 4.79826 4.83257 5.02064 5.04132 5.07067 5.21630 5.29769 5.31088 5.34203 5.38189 5.46426 5.52602 5.56392 5.63654 5.64321 5.80549 5.83946 5.91362 5.97892 5.98857 6.05565 6.18302 6.24294 6.34065 6.42494 6.46878 6.62046 6.68651 6.81737 6.83937 6.87431 7.01217 7.09655 7.37657 7.54893 7.77009 7.95642 8.08324 8.44011 8.63181 8.99905 9.30317 9.61040 11.09601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.002061 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.539271 B =13585.194456 C =14427.926972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.081 4.081 7 C -0.091 4.091 8 C 0.147 3.853 9 N -0.759 5.759 10 C 0.701 3.299 11 O -0.584 6.584 12 N -0.624 5.624 13 C 0.116 3.884 14 C -0.134 4.134 15 C -0.109 4.109 16 C 0.039 3.961 17 H 0.030 0.970 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.131 3.869 27 C -0.110 4.110 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.390 0.610 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.263 0.737 48 H 0.039 0.961 49 H 0.118 0.882 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.220 -8.435 4.154 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.082 4.082 7 C -0.129 4.129 8 C 0.022 3.978 9 N -0.419 5.419 10 C 0.402 3.598 11 O -0.461 6.461 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.048 0.952 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.010 3.990 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.136 0.864 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.516 -9.315 4.190 24.724 hybrid contribution 0.650 0.643 -0.145 0.926 sum -21.865 -8.671 4.045 23.867 Atomic orbital electron populations 1.21745 0.94787 1.01619 1.02190 1.20545 0.96112 0.92785 1.02868 1.19893 0.99366 0.96200 0.93280 1.21005 1.00081 0.94855 0.97506 1.21079 0.99126 0.94836 0.97708 1.19670 0.99480 0.95693 0.93331 1.20790 0.95224 0.93407 1.03450 1.21023 0.91418 0.82901 1.02483 1.45330 1.06086 1.08002 1.82457 1.15941 0.81871 0.83808 0.78184 1.90921 1.54672 1.43193 1.57334 1.47801 1.09475 1.02855 1.75899 1.21394 0.91825 0.88929 0.98643 1.21879 0.99118 0.98548 0.97701 1.21613 0.92600 0.99998 1.00502 1.19008 0.94022 0.90808 0.94210 0.95163 1.21065 0.90580 0.93623 1.50763 0.92392 1.25065 0.99049 0.94973 0.94943 1.69928 1.33494 0.99639 1.48469 0.86596 0.85130 0.78405 0.77965 1.20738 1.21196 1.19896 1.22182 0.74868 1.03841 0.98063 1.21054 0.99263 0.94860 0.97637 1.20992 1.00168 0.94869 0.97478 0.92599 0.92471 0.92571 0.91077 0.91053 0.86190 0.85898 0.90369 0.90438 0.91806 0.91826 0.77426 0.92183 0.92199 0.92335 0.92220 0.93249 0.93036 0.92699 0.94276 0.86441 0.85978 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.09 -0.59 6.06 -27.89 -0.17 -0.76 16 3 C -0.09 -0.78 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 5 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 6 C -0.08 -0.82 5.13 -104.63 -0.54 -1.36 16 7 C -0.09 -0.87 5.46 -27.88 -0.15 -1.02 16 8 C 0.15 1.99 5.66 -4.04 -0.02 1.97 16 9 N -0.76 -11.59 5.47 -65.23 -0.36 -11.94 16 10 C 0.70 14.73 8.30 -86.92 -0.72 14.01 16 11 O -0.58 -15.15 15.79 5.29 0.08 -15.06 16 12 N -0.62 -12.82 2.98 -178.77 -0.53 -13.36 16 13 C 0.12 1.80 6.40 -3.94 -0.03 1.78 16 14 C -0.13 -2.14 6.06 -26.84 -0.16 -2.31 16 15 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 16 C 0.04 0.97 2.20 -91.65 -0.20 0.77 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.52 -14.28 8.49 -34.44 -0.29 -14.57 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 20 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 21 N -0.88 -26.10 11.61 55.43 0.64 -25.46 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.13 3.25 5.46 -3.71 -0.02 3.23 16 27 C -0.11 -1.06 9.70 -39.59 -0.38 -1.45 16 28 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.08 -51.92 -0.42 0.03 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.08 0.64 8.09 -51.92 -0.42 0.22 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.39 4.71 5.93 -40.82 -0.24 4.46 16 41 H 0.06 0.72 5.57 -51.93 -0.29 0.43 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.12 3.43 5.38 -51.93 -0.28 3.15 16 50 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -33.27 405.45 -12.11 -45.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.80 Total: 4.42 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -4.24 Total: -6.57 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.25 Total: -50.76 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.27 -12.11 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595515939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.446 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds