Wall clock time and date at job start Tue Mar 31 2020 16:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47152 * 2 1 4 4 C 1.38240 * 119.99998 * 269.72950 * 3 2 1 5 5 C 1.38230 * 120.00168 * 179.81203 * 4 3 2 6 6 C 1.38241 * 119.99729 * 0.41504 * 5 4 3 7 7 C 1.50695 * 119.99688 * 179.78994 * 6 5 4 8 8 C 1.53004 * 109.47685 * 270.02471 * 7 6 5 9 9 N 1.46498 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99743 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99948 * 354.89349 * 10 9 8 12 12 N 1.34777 * 119.99709 * 174.89936 * 10 9 8 13 13 C 1.46924 * 120.63416 * 4.74368 * 12 10 9 14 14 C 1.52754 * 109.00969 * 233.58578 * 13 12 10 15 15 C 1.53040 * 109.38642 * 305.59035 * 14 13 12 16 16 C 1.53039 * 109.53861 * 61.23652 * 15 14 13 17 17 H 1.08998 * 109.49599 * 58.58987 * 16 15 14 18 18 C 1.50700 * 109.49861 * 178.68713 * 16 15 14 19 19 H 1.07997 * 119.99828 * 5.23456 * 18 16 15 20 20 C 1.37876 * 119.99872 * 185.24586 * 18 16 15 21 21 N 1.31513 * 120.00279 * 355.11727 * 20 18 16 22 22 Si 1.86809 * 119.99713 * 175.12350 * 20 18 16 23 23 H 1.48503 * 109.47100 * 94.99397 * 22 20 18 24 24 H 1.48500 * 109.46688 * 214.99234 * 22 20 18 25 25 H 1.48497 * 109.46976 * 334.99380 * 22 20 18 26 26 C 1.46928 * 120.62702 * 185.02664 * 12 10 9 27 27 C 1.38227 * 120.00064 * 359.81808 * 6 5 4 28 28 C 1.38235 * 120.00271 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.46901 * 299.99909 * 1 2 3 30 30 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47673 * 59.99737 * 1 2 3 32 32 H 1.08997 * 109.47322 * 120.00581 * 2 1 3 33 33 H 1.09009 * 109.46901 * 240.00091 * 2 1 3 34 34 H 1.08000 * 119.99873 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00383 * 180.20953 * 5 4 3 36 36 H 1.09004 * 109.47283 * 30.02973 * 7 6 5 37 37 H 1.09009 * 109.46956 * 150.02358 * 7 6 5 38 38 H 1.08996 * 109.46861 * 300.00569 * 8 7 6 39 39 H 1.08999 * 109.46565 * 60.00200 * 8 7 6 40 40 H 0.97003 * 120.00216 * 359.97438 * 9 8 7 41 41 H 1.09002 * 109.58536 * 353.42099 * 13 12 10 42 42 H 1.09003 * 109.58383 * 113.84314 * 13 12 10 43 43 H 1.08997 * 109.56363 * 185.55098 * 14 13 12 44 44 H 1.09001 * 109.38764 * 65.51582 * 14 13 12 45 45 H 1.09002 * 109.45799 * 301.21980 * 15 14 13 46 46 H 1.09001 * 109.45105 * 181.25189 * 15 14 13 47 47 H 0.96999 * 119.99848 * 180.02562 * 21 20 18 48 48 H 1.08991 * 109.58649 * 246.15443 * 26 12 10 49 49 H 1.09001 * 109.58531 * 6.58124 * 26 12 10 50 50 H 1.07998 * 120.00308 * 179.97438 * 27 6 5 51 51 H 1.07991 * 120.00481 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7251 3.3751 -1.1972 6 6 2.9547 4.0271 0.0000 7 6 3.4575 5.4477 -0.0001 8 6 4.9875 5.4473 0.0006 9 7 5.4762 6.8284 0.0011 10 6 6.8014 7.0742 0.0013 11 8 7.5904 6.1539 0.0947 12 7 7.2518 8.3403 -0.1020 13 6 6.3131 9.4705 -0.1111 14 6 6.5808 10.3297 -1.3454 15 6 8.0558 10.7371 -1.3705 16 6 8.9314 9.4846 -1.4526 17 1 8.6748 8.9194 -2.3486 18 6 10.3823 9.8880 -1.5098 19 1 10.6584 10.9267 -1.4046 20 6 11.3570 8.9309 -1.6966 21 7 11.0306 7.6573 -1.7287 22 14 13.1414 9.4433 -1.9039 23 1 13.8305 9.3800 -0.5899 24 1 13.8121 8.5253 -2.8592 25 1 13.2001 10.8317 -2.4272 26 6 8.6906 8.6161 -0.2138 27 6 2.7235 3.3757 1.1970 28 6 2.2624 2.0726 1.1971 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 2.0918 1.5601 -2.1325 35 1 2.9061 3.8839 -2.1326 36 1 3.0947 5.9615 -0.8904 37 1 3.0938 5.9618 0.8896 38 1 5.3502 4.9335 0.8908 39 1 5.3510 4.9332 -0.8891 40 1 4.8461 7.5659 0.0006 41 1 5.2901 9.0955 -0.1435 42 1 6.4559 10.0714 0.7871 43 1 5.9572 11.2230 -1.3105 44 1 6.3463 9.7571 -2.2427 45 1 8.2957 11.2889 -0.4616 46 1 8.2432 11.3686 -2.2389 47 1 11.7164 6.9840 -1.8597 48 1 9.0313 9.1458 0.6757 49 1 9.2359 7.6776 -0.3140 50 1 2.9033 3.8849 2.1324 51 1 2.0822 1.5636 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595515939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:08 Heat of formation + Delta-G solvation = -44.314559 kcal Electronic energy + Delta-G solvation = -27589.173809 eV Core-core repulsion = 23872.513508 eV Total energy + Delta-G solvation = -3716.660300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.31079 -40.42748 -38.56844 -36.77151 -35.44335 -34.90160 -33.46276 -32.18847 -31.79583 -31.44868 -28.85348 -27.01253 -26.16243 -24.75861 -23.62275 -23.46982 -23.10392 -21.76326 -21.33669 -20.31021 -19.09442 -18.21246 -17.40425 -16.92449 -16.85993 -16.58164 -16.30025 -16.00329 -15.49079 -15.20943 -15.14717 -15.09717 -14.57906 -14.51186 -14.40302 -14.31848 -14.13161 -13.94678 -13.75310 -13.53666 -13.24248 -12.91071 -12.74091 -12.64876 -12.48516 -12.37442 -12.31922 -12.20430 -11.96461 -11.82815 -11.67633 -11.62932 -11.61724 -11.21907 -10.92739 -10.83637 -10.54037 -10.17301 -9.79504 -9.41242 -9.25380 -8.10666 -6.27162 0.40144 0.52797 1.40732 1.41066 1.52882 1.78878 2.26058 2.42338 2.82441 3.05992 3.20149 3.84548 3.88155 4.00860 4.05675 4.11477 4.12854 4.17853 4.19498 4.30905 4.36569 4.51601 4.58207 4.61282 4.61689 4.66933 4.72642 4.75439 4.82287 4.85625 4.95226 5.02252 5.07219 5.09417 5.12337 5.20464 5.25355 5.27222 5.29795 5.33857 5.38763 5.51370 5.56677 5.58148 5.65638 5.73023 5.75364 5.89597 5.97549 6.14103 6.18385 6.36503 6.87066 7.15045 7.42925 7.68857 8.93512 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.002061 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.539271 B =13585.194456 C =14427.926972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.074 4.074 8 C 0.148 3.852 9 N -0.733 5.733 10 C 0.692 3.308 11 O -0.644 6.644 12 N -0.628 5.628 13 C 0.109 3.891 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.037 3.963 17 H -0.013 1.013 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.916 5.916 22 Si 0.958 3.042 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.260 1.260 26 C 0.146 3.854 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.410 0.590 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.259 0.741 48 H 0.035 0.965 49 H 0.067 0.933 50 H 0.133 0.867 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.666 -6.873 4.696 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.098 4.098 7 C -0.112 4.112 8 C 0.024 3.976 9 N -0.393 5.393 10 C 0.393 3.607 11 O -0.526 6.526 12 N -0.364 5.364 13 C -0.013 4.013 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.018 3.982 17 H 0.005 0.995 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.555 5.555 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.184 1.184 26 C 0.023 3.977 27 C -0.138 4.138 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.151 0.849 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.043 -7.696 4.732 26.623 hybrid contribution 1.368 0.114 -0.313 1.408 sum -23.675 -7.582 4.419 25.249 Atomic orbital electron populations 1.21719 0.94006 1.02365 1.01937 1.20593 0.96728 0.91584 1.03404 1.20202 0.98758 0.97177 0.93158 1.21253 1.00128 0.94906 0.98369 1.21291 0.99326 0.95338 0.98082 1.19776 1.00294 0.96059 0.93636 1.20673 0.91508 0.93749 1.05241 1.21086 0.94345 0.81454 1.00703 1.45061 1.04104 1.09522 1.80606 1.16234 0.83239 0.83253 0.77942 1.90878 1.56724 1.45095 1.59877 1.47701 1.08690 1.04357 1.75637 1.21799 0.92610 0.87479 0.99364 1.21840 0.96730 1.00387 0.97451 1.21504 0.94536 0.97255 1.00932 1.18941 0.94264 0.92754 0.92253 0.99490 1.21528 0.92165 0.93785 1.49861 0.91834 1.25941 1.03628 0.94849 0.94802 1.70133 1.34579 1.00831 1.49944 0.85538 0.79745 0.78457 0.77898 1.20257 1.21337 1.18421 1.21570 0.77413 1.01102 0.97655 1.21292 0.99152 0.95285 0.98030 1.21264 1.00017 0.94930 0.98314 0.92768 0.91239 0.92896 0.90461 0.90629 0.84950 0.85306 0.88797 0.88343 0.93329 0.94087 0.75047 0.87941 0.90193 0.87560 0.93192 0.92388 0.92961 0.93226 0.94712 0.91493 0.84874 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.78 16 2 C -0.09 -1.07 6.06 29.85 0.18 -0.89 16 3 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 4 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 5 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 6 C -0.10 -1.86 5.13 -19.87 -0.10 -1.96 16 7 C -0.07 -1.27 5.46 29.85 0.16 -1.11 16 8 C 0.15 4.00 5.66 86.38 0.49 4.49 16 9 N -0.73 -21.49 5.47 -478.54 -2.62 -24.11 16 10 C 0.69 29.56 8.30 179.05 1.49 31.05 16 11 O -0.64 -35.26 15.79 -4.00 -0.06 -35.33 16 12 N -0.63 -25.77 2.98 -837.76 -2.50 -28.26 16 13 C 0.11 3.03 6.40 86.22 0.55 3.58 16 14 C -0.13 -3.61 6.06 30.53 0.19 -3.42 16 15 C -0.10 -4.02 5.11 30.62 0.16 -3.86 16 16 C 0.04 1.91 2.20 -11.46 -0.03 1.89 16 17 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 18 C -0.53 -29.90 8.49 25.60 0.22 -29.68 16 19 H 0.06 3.39 7.75 -2.91 -0.02 3.37 16 20 C 0.01 0.41 5.36 84.65 0.45 0.86 16 21 N -0.92 -57.30 11.61 21.45 0.25 -57.05 16 22 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.15 7.49 5.46 86.36 0.47 7.96 16 27 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 28 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.08 0.87 8.08 -2.38 -0.02 0.85 16 34 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.09 1.35 8.09 -2.38 -0.02 1.33 16 37 H 0.10 1.31 8.09 -2.38 -0.02 1.29 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.41 8.52 5.93 -92.71 -0.55 7.97 16 41 H 0.10 1.96 5.57 -2.39 -0.01 1.95 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 48 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 4.17 5.38 -2.39 -0.01 4.15 16 50 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 51 H 0.14 1.79 8.06 -2.92 -0.02 1.77 16 Total: -1.00 -78.74 405.45 3.15 -75.59 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.35 Total: 23.80 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.70 Total: -1.72 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.86 Total: -109.43 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -78.74 3.15 -75.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595515939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.280 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds