Wall clock time and date at job start Tue Mar 31 2020 16:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46882 * 2 1 4 4 C 1.38234 * 119.99921 * 269.72694 * 3 2 1 5 5 C 1.38230 * 119.99800 * 179.81520 * 4 3 2 6 6 C 1.38236 * 120.00202 * 0.41725 * 5 4 3 7 7 C 1.50698 * 119.99983 * 179.79381 * 6 5 4 8 8 C 1.53002 * 109.47235 * 270.01743 * 7 6 5 9 9 N 1.46499 * 109.47162 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99460 * 180.02562 * 9 8 7 11 11 O 1.21579 * 120.00509 * 355.01487 * 10 9 8 12 12 N 1.34774 * 119.99431 * 175.01500 * 10 9 8 13 13 C 1.46931 * 120.63491 * 4.94412 * 12 10 9 14 14 C 1.53617 * 108.54664 * 126.36544 * 13 12 10 15 15 C 1.53041 * 109.24347 * 54.85682 * 14 13 12 16 16 C 1.53042 * 109.53776 * 298.51267 * 15 14 13 17 17 H 1.08996 * 109.49469 * 301.41053 * 16 15 14 18 18 C 1.50703 * 109.52377 * 181.32864 * 16 15 14 19 19 H 1.07994 * 119.99845 * 0.14902 * 18 16 15 20 20 C 1.37878 * 119.99864 * 180.14665 * 18 16 15 21 21 N 1.31513 * 119.99964 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 119.99917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47488 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46927 * 119.99550 * 22 20 18 25 25 H 1.48500 * 109.47458 * 239.99653 * 22 20 18 26 26 C 1.46931 * 120.63094 * 185.21862 * 12 10 9 27 27 C 1.38233 * 119.99969 * 359.81287 * 6 5 4 28 28 C 1.38228 * 120.00007 * 90.00460 * 3 2 1 29 29 H 1.09005 * 109.46712 * 300.00289 * 1 2 3 30 30 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47166 * 59.99713 * 1 2 3 32 32 H 1.08998 * 109.47277 * 119.99512 * 2 1 3 33 33 H 1.08995 * 109.46977 * 240.00201 * 2 1 3 34 34 H 1.08001 * 119.99973 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.00039 * 180.21094 * 5 4 3 36 36 H 1.08998 * 109.47331 * 30.01958 * 7 6 5 37 37 H 1.09005 * 109.47091 * 150.02110 * 7 6 5 38 38 H 1.08998 * 109.47137 * 300.00334 * 8 7 6 39 39 H 1.09005 * 109.46781 * 60.00177 * 8 7 6 40 40 H 0.96996 * 120.00263 * 0.02562 * 9 8 7 41 41 H 1.08997 * 109.58494 * 246.20462 * 13 12 10 42 42 H 1.09000 * 109.58256 * 6.62484 * 13 12 10 43 43 H 1.09001 * 109.63347 * 294.86561 * 14 13 12 44 44 H 1.08997 * 109.45912 * 174.74356 * 14 13 12 45 45 H 1.08997 * 109.46253 * 178.49149 * 15 14 13 46 46 H 1.09003 * 109.45663 * 58.52907 * 15 14 13 47 47 H 0.96996 * 119.99748 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.58388 * 353.37458 * 26 12 10 49 49 H 1.08995 * 109.58322 * 113.65617 * 26 12 10 50 50 H 1.07990 * 120.00341 * 179.97438 * 27 6 5 51 51 H 1.08003 * 119.99911 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1971 6 6 2.9547 4.0272 0.0000 7 6 3.4575 5.4478 0.0000 8 6 4.9875 5.4474 0.0008 9 7 5.4762 6.8285 0.0014 10 6 6.8014 7.0743 0.0016 11 8 7.5904 6.1539 0.0929 12 7 7.2518 8.3405 -0.0993 13 6 6.3133 9.4711 -0.1015 14 6 6.7398 10.4623 0.9918 15 6 8.2014 10.8589 0.7708 16 6 9.0898 9.6170 0.8738 17 1 8.9614 9.1582 1.8542 18 6 10.5321 10.0128 0.6886 19 1 10.7904 11.0472 0.5170 20 6 11.5218 9.0541 0.7382 21 7 11.2073 7.7945 0.9476 22 14 13.3096 9.5448 0.5092 23 1 13.3966 11.0112 0.2920 24 1 14.0828 9.1780 1.7229 25 1 13.8708 8.8352 -0.6684 26 6 8.6903 8.6164 -0.2152 27 6 2.7235 3.3758 1.1972 28 6 2.2628 2.0725 1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0927 1.5599 -2.1324 35 1 2.9061 3.8840 -2.1324 36 1 3.0947 5.9616 -0.8903 37 1 3.0938 5.9620 0.8897 38 1 5.3502 4.9337 0.8910 39 1 5.3511 4.9333 -0.8889 40 1 4.8461 7.5659 0.0016 41 1 6.3362 9.9630 -1.0739 42 1 5.3056 9.1098 0.1038 43 1 6.6336 9.9956 1.9711 44 1 6.1103 11.3508 0.9421 45 1 8.4999 11.5828 1.5290 46 1 8.3115 11.3030 -0.2185 47 1 11.9035 7.1200 0.9821 48 1 9.2514 7.6911 -0.0849 49 1 8.9034 9.0378 -1.1975 50 1 2.9033 3.8850 2.1324 51 1 2.0825 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595515940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:12 Heat of formation + Delta-G solvation = -25.158393 kcal Electronic energy + Delta-G solvation = -27569.210337 eV Core-core repulsion = 23853.380711 eV Total energy + Delta-G solvation = -3715.829627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.90888 -39.51202 -36.95489 -35.67286 -34.13675 -33.26400 -31.83807 -31.16212 -31.10977 -29.66692 -27.93559 -25.08543 -24.82548 -23.67063 -22.93098 -22.32484 -21.75998 -20.67912 -20.02272 -18.76273 -17.47852 -16.37549 -16.19264 -16.05320 -15.77870 -15.18976 -15.05943 -14.57459 -14.16327 -14.12080 -13.86813 -13.76019 -13.65553 -13.49635 -13.37733 -13.16235 -12.76891 -12.55347 -12.42747 -12.18625 -12.06931 -11.88246 -11.65729 -11.60610 -11.27978 -11.05774 -10.99376 -10.97076 -10.86504 -10.46183 -10.36878 -10.19418 -9.83724 -9.39315 -9.09682 -9.05850 -8.90565 -8.69760 -8.69512 -8.38082 -7.59095 -5.94033 -4.03409 1.11832 1.23256 3.23998 3.33893 3.41354 3.44314 3.57223 3.90436 4.37358 4.46678 4.50978 4.53415 4.77182 4.79504 4.82568 5.01493 5.03554 5.06410 5.21068 5.29223 5.31534 5.35564 5.37507 5.45716 5.51667 5.55885 5.63031 5.64267 5.79963 5.83171 5.90742 5.96994 5.98426 6.05441 6.19147 6.23612 6.34310 6.41849 6.46157 6.61991 6.70455 6.81288 6.84319 6.87506 7.02772 7.08953 7.39953 7.55430 7.79422 7.97757 8.11328 8.45430 8.64186 9.00625 9.31526 9.62020 11.10810 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002036 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.414325 B =13751.462439 C =14625.932265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.110 4.110 6 C -0.081 4.081 7 C -0.091 4.091 8 C 0.147 3.853 9 N -0.759 5.759 10 C 0.699 3.301 11 O -0.581 6.581 12 N -0.624 5.624 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.039 3.961 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.129 3.871 27 C -0.109 4.109 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.390 0.610 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.263 0.737 48 H 0.123 0.877 49 H 0.038 0.962 50 H 0.123 0.877 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.674 -8.853 -2.763 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.128 4.128 6 C -0.082 4.082 7 C -0.129 4.129 8 C 0.022 3.978 9 N -0.419 5.419 10 C 0.401 3.599 11 O -0.458 6.458 12 N -0.360 5.360 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.019 3.981 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.008 3.992 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.225 0.775 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.141 0.859 49 H 0.057 0.943 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.964 -9.730 -2.698 25.086 hybrid contribution 0.646 0.638 -0.102 0.914 sum -22.318 -9.092 -2.800 24.261 Atomic orbital electron populations 1.21746 0.94785 1.01623 1.02192 1.20547 0.96115 0.92780 1.02868 1.19893 0.99360 0.96204 0.93280 1.20994 1.00160 0.94859 0.97484 1.21058 0.99279 0.94839 0.97644 1.19672 0.99480 0.95695 0.93331 1.20789 0.95228 0.93401 1.03452 1.21021 0.91415 0.82918 1.02466 1.45343 1.06094 1.07985 1.82497 1.15955 0.81864 0.83893 0.78237 1.90933 1.54584 1.43208 1.57096 1.47793 1.09495 1.02755 1.76004 1.21572 0.91656 0.88552 0.99076 1.22019 0.98826 0.97775 0.98531 1.21610 0.92770 1.00007 1.00326 1.18990 0.93518 0.90281 0.95273 0.95333 1.21111 0.90554 0.93998 1.50295 0.92355 1.25070 0.99063 0.95052 0.94938 1.69916 1.32916 1.00327 1.48352 0.86553 0.85252 0.78561 0.77726 1.19817 1.21060 1.21004 1.22167 0.74802 1.04263 0.97960 1.21073 0.99125 0.94856 0.97698 1.21003 1.00083 0.94865 0.97504 0.92580 0.92467 0.92588 0.91056 0.91073 0.86223 0.85970 0.90427 0.90381 0.91730 0.91931 0.77458 0.92179 0.92182 0.92192 0.92400 0.93102 0.93223 0.92733 0.85924 0.94329 0.85911 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 2 C -0.09 -0.58 6.07 -27.88 -0.17 -0.75 16 3 C -0.09 -0.78 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.06 9.70 -39.59 -0.38 -1.44 16 5 C -0.11 -1.06 9.70 -39.58 -0.38 -1.44 16 6 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 7 C -0.09 -0.86 5.46 -27.88 -0.15 -1.02 16 8 C 0.15 1.98 5.66 -4.04 -0.02 1.95 16 9 N -0.76 -11.55 5.47 -65.22 -0.36 -11.90 16 10 C 0.70 14.71 8.30 -86.92 -0.72 13.99 16 11 O -0.58 -15.15 15.77 5.30 0.08 -15.07 16 12 N -0.62 -12.86 2.97 -178.23 -0.53 -13.39 16 13 C 0.12 1.80 6.42 -3.49 -0.02 1.78 16 14 C -0.13 -2.15 6.10 -26.39 -0.16 -2.31 16 15 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 16 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -14.31 8.57 -34.44 -0.29 -14.60 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -26.15 11.39 55.43 0.63 -25.52 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.13 3.20 5.41 -3.71 -0.02 3.18 16 27 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 28 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.39 4.69 5.96 -40.82 -0.24 4.44 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.73 5.64 -51.93 -0.29 0.43 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.12 3.59 5.11 -51.93 -0.27 3.32 16 49 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -33.40 405.08 -12.12 -45.52 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.79 Total: 4.40 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.24 Total: -6.65 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.25 Total: -50.81 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.40 -12.12 -45.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595515940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.359 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds