Wall clock time and date at job start Tue Mar 31 2020 16:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46882 * 2 1 4 4 C 1.38234 * 119.99921 * 269.72694 * 3 2 1 5 5 C 1.38230 * 119.99800 * 179.81520 * 4 3 2 6 6 C 1.38236 * 120.00202 * 0.41725 * 5 4 3 7 7 C 1.50698 * 119.99983 * 179.79381 * 6 5 4 8 8 C 1.53002 * 109.47235 * 270.01743 * 7 6 5 9 9 N 1.46499 * 109.47162 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99460 * 180.02562 * 9 8 7 11 11 O 1.21579 * 120.00509 * 355.01487 * 10 9 8 12 12 N 1.34774 * 119.99431 * 175.01500 * 10 9 8 13 13 C 1.46931 * 120.63491 * 4.94412 * 12 10 9 14 14 C 1.53617 * 108.54664 * 126.36544 * 13 12 10 15 15 C 1.53041 * 109.24347 * 54.85682 * 14 13 12 16 16 C 1.53042 * 109.53776 * 298.51267 * 15 14 13 17 17 H 1.08996 * 109.49469 * 301.41053 * 16 15 14 18 18 C 1.50703 * 109.52377 * 181.32864 * 16 15 14 19 19 H 1.07994 * 119.99845 * 0.14902 * 18 16 15 20 20 C 1.37878 * 119.99864 * 180.14665 * 18 16 15 21 21 N 1.31513 * 119.99964 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 119.99917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47488 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46927 * 119.99550 * 22 20 18 25 25 H 1.48500 * 109.47458 * 239.99653 * 22 20 18 26 26 C 1.46931 * 120.63094 * 185.21862 * 12 10 9 27 27 C 1.38233 * 119.99969 * 359.81287 * 6 5 4 28 28 C 1.38228 * 120.00007 * 90.00460 * 3 2 1 29 29 H 1.09005 * 109.46712 * 300.00289 * 1 2 3 30 30 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47166 * 59.99713 * 1 2 3 32 32 H 1.08998 * 109.47277 * 119.99512 * 2 1 3 33 33 H 1.08995 * 109.46977 * 240.00201 * 2 1 3 34 34 H 1.08001 * 119.99973 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.00039 * 180.21094 * 5 4 3 36 36 H 1.08998 * 109.47331 * 30.01958 * 7 6 5 37 37 H 1.09005 * 109.47091 * 150.02110 * 7 6 5 38 38 H 1.08998 * 109.47137 * 300.00334 * 8 7 6 39 39 H 1.09005 * 109.46781 * 60.00177 * 8 7 6 40 40 H 0.96996 * 120.00263 * 0.02562 * 9 8 7 41 41 H 1.08997 * 109.58494 * 246.20462 * 13 12 10 42 42 H 1.09000 * 109.58256 * 6.62484 * 13 12 10 43 43 H 1.09001 * 109.63347 * 294.86561 * 14 13 12 44 44 H 1.08997 * 109.45912 * 174.74356 * 14 13 12 45 45 H 1.08997 * 109.46253 * 178.49149 * 15 14 13 46 46 H 1.09003 * 109.45663 * 58.52907 * 15 14 13 47 47 H 0.96996 * 119.99748 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.58388 * 353.37458 * 26 12 10 49 49 H 1.08995 * 109.58322 * 113.65617 * 26 12 10 50 50 H 1.07990 * 120.00341 * 179.97438 * 27 6 5 51 51 H 1.08003 * 119.99911 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1971 6 6 2.9547 4.0272 0.0000 7 6 3.4575 5.4478 0.0000 8 6 4.9875 5.4474 0.0008 9 7 5.4762 6.8285 0.0014 10 6 6.8014 7.0743 0.0016 11 8 7.5904 6.1539 0.0929 12 7 7.2518 8.3405 -0.0993 13 6 6.3133 9.4711 -0.1015 14 6 6.7398 10.4623 0.9918 15 6 8.2014 10.8589 0.7708 16 6 9.0898 9.6170 0.8738 17 1 8.9614 9.1582 1.8542 18 6 10.5321 10.0128 0.6886 19 1 10.7904 11.0472 0.5170 20 6 11.5218 9.0541 0.7382 21 7 11.2073 7.7945 0.9476 22 14 13.3096 9.5448 0.5092 23 1 13.3966 11.0112 0.2920 24 1 14.0828 9.1780 1.7229 25 1 13.8708 8.8352 -0.6684 26 6 8.6903 8.6164 -0.2152 27 6 2.7235 3.3758 1.1972 28 6 2.2628 2.0725 1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0927 1.5599 -2.1324 35 1 2.9061 3.8840 -2.1324 36 1 3.0947 5.9616 -0.8903 37 1 3.0938 5.9620 0.8897 38 1 5.3502 4.9337 0.8910 39 1 5.3511 4.9333 -0.8889 40 1 4.8461 7.5659 0.0016 41 1 6.3362 9.9630 -1.0739 42 1 5.3056 9.1098 0.1038 43 1 6.6336 9.9956 1.9711 44 1 6.1103 11.3508 0.9421 45 1 8.4999 11.5828 1.5290 46 1 8.3115 11.3030 -0.2185 47 1 11.9035 7.1200 0.9821 48 1 9.2514 7.6911 -0.0849 49 1 8.9034 9.0378 -1.1975 50 1 2.9033 3.8850 2.1324 51 1 2.0825 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595515940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:11 Heat of formation + Delta-G solvation = -43.669588 kcal Electronic energy + Delta-G solvation = -27570.013043 eV Core-core repulsion = 23853.380711 eV Total energy + Delta-G solvation = -3716.632332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29585 -40.42568 -38.54801 -36.76225 -35.44684 -34.89714 -33.46470 -32.17006 -31.79476 -31.39379 -28.85104 -27.01420 -26.15036 -24.75185 -23.62198 -23.47881 -23.09877 -21.75042 -21.33797 -20.33101 -19.05880 -18.21421 -17.39647 -16.92354 -16.86152 -16.58246 -16.29589 -16.00084 -15.46202 -15.22772 -15.15381 -15.00731 -14.58640 -14.51770 -14.42452 -14.30182 -14.12520 -13.94032 -13.79092 -13.51955 -13.24174 -12.91168 -12.73721 -12.63945 -12.48777 -12.37044 -12.26741 -12.19832 -11.96544 -11.85449 -11.67682 -11.63138 -11.61256 -11.21988 -10.94524 -10.81391 -10.51769 -10.17233 -9.79398 -9.41204 -9.24257 -8.08955 -6.26840 0.40269 0.52878 1.39942 1.41265 1.53655 1.80928 2.24933 2.42476 2.82664 3.07317 3.20663 3.84668 3.88283 4.01421 4.05761 4.11569 4.12217 4.17521 4.18862 4.31274 4.36712 4.51613 4.58445 4.61474 4.62163 4.67053 4.72660 4.74548 4.82241 4.85822 4.95468 5.02199 5.07266 5.09447 5.12266 5.20470 5.25443 5.28346 5.29390 5.34341 5.38773 5.51577 5.56660 5.58684 5.67175 5.73109 5.75468 5.90835 5.99701 6.14393 6.19358 6.37311 6.87184 7.15955 7.43272 7.70171 8.94221 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002036 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.414325 B =13751.462439 C =14625.932265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.120 4.120 6 C -0.097 4.097 7 C -0.074 4.074 8 C 0.148 3.852 9 N -0.733 5.733 10 C 0.691 3.309 11 O -0.643 6.643 12 N -0.628 5.628 13 C 0.109 3.891 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.037 3.963 17 H -0.017 1.017 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.915 5.915 22 Si 0.959 3.041 23 H -0.259 1.259 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.142 3.858 27 C -0.122 4.122 28 C -0.128 4.128 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.258 0.742 48 H 0.073 0.927 49 H 0.035 0.965 50 H 0.129 0.871 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.163 -7.354 -3.492 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.098 4.098 7 C -0.112 4.112 8 C 0.024 3.976 9 N -0.393 5.393 10 C 0.392 3.608 11 O -0.524 6.524 12 N -0.364 5.364 13 C -0.013 4.013 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.017 3.983 17 H 0.001 0.999 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.554 5.554 22 Si 0.784 3.216 23 H -0.182 1.182 24 H -0.210 1.210 25 H -0.209 1.209 26 C 0.019 3.981 27 C -0.140 4.140 28 C -0.146 4.146 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.249 0.751 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.147 0.853 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.536 -8.175 -3.428 27.031 hybrid contribution 1.378 0.128 0.141 1.391 sum -24.158 -8.047 -3.287 25.674 Atomic orbital electron populations 1.21721 0.94013 1.02361 1.01935 1.20594 0.96723 0.91591 1.03400 1.20201 0.98762 0.97175 0.93164 1.21264 1.00039 0.94931 0.98316 1.21294 0.99189 0.95262 0.98040 1.19778 1.00290 0.96060 0.93634 1.20672 0.91525 0.93738 1.05239 1.21089 0.94327 0.81446 1.00726 1.45067 1.04075 1.09527 1.80618 1.16244 0.83240 0.83322 0.77967 1.90891 1.56679 1.45147 1.59696 1.47697 1.08698 1.04267 1.75747 1.21977 0.92260 0.86878 1.00154 1.21984 0.96640 0.99706 0.98061 1.21500 0.94549 0.97264 1.00890 1.18932 0.94029 0.92504 0.92823 0.99860 1.21562 0.92144 0.94143 1.49434 0.91837 1.25942 1.03654 0.94894 0.94777 1.70128 1.33954 1.01506 1.49824 0.85493 0.79791 0.78867 0.77433 1.18233 1.20970 1.20890 1.21563 0.77343 1.01693 0.97453 1.21289 0.99288 0.95346 0.98080 1.21252 1.00110 0.94918 0.98359 0.92885 0.91244 0.92781 0.90612 0.90482 0.84732 0.84900 0.88370 0.88783 0.93967 0.93400 0.75073 0.90014 0.87967 0.93355 0.87617 0.93054 0.92284 0.93244 0.90840 0.94647 0.85263 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.09 -1.06 6.07 29.85 0.18 -0.88 16 3 C -0.09 -1.56 5.13 -19.87 -0.10 -1.66 16 4 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 5 C -0.12 -2.17 9.70 22.27 0.22 -1.95 16 6 C -0.10 -1.84 5.13 -19.87 -0.10 -1.94 16 7 C -0.07 -1.26 5.46 29.85 0.16 -1.09 16 8 C 0.15 3.96 5.66 86.38 0.49 4.44 16 9 N -0.73 -21.36 5.47 -478.54 -2.62 -23.98 16 10 C 0.69 29.53 8.30 179.05 1.49 31.01 16 11 O -0.64 -35.38 15.77 -3.96 -0.06 -35.45 16 12 N -0.63 -25.82 2.97 -836.08 -2.48 -28.30 16 13 C 0.11 3.03 6.42 86.50 0.56 3.59 16 14 C -0.13 -3.66 6.10 30.82 0.19 -3.47 16 15 C -0.10 -4.04 5.11 30.62 0.16 -3.88 16 16 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 17 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 18 C -0.53 -29.98 8.57 25.60 0.22 -29.76 16 19 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 20 C 0.01 0.38 5.30 84.66 0.45 0.82 16 21 N -0.92 -57.39 11.39 21.45 0.24 -57.15 16 22 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 C 0.14 7.34 5.41 86.36 0.47 7.81 16 27 C -0.12 -2.30 9.70 22.27 0.22 -2.09 16 28 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 37 H 0.09 1.32 8.09 -2.38 -0.02 1.30 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.41 8.46 5.96 -92.71 -0.55 7.90 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.10 1.97 5.64 -2.39 -0.01 1.96 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 48 H 0.07 4.58 5.11 -2.39 -0.01 4.56 16 49 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.13 2.15 8.06 -2.92 -0.02 2.13 16 51 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -79.11 405.08 3.16 -75.95 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.35 Total: 23.71 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.70 Total: -1.97 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.85 Total: -109.43 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.06 Total: -35.45 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -79.11 3.16 -75.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595515940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.278 kcal (2) G-P(sol) polarization free energy of solvation -79.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds