Wall clock time and date at job start Tue Mar 31 2020 16:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00216 * 2 1 4 4 C 1.52996 * 109.46788 * 269.99970 * 3 2 1 5 5 H 1.08995 * 115.55613 * 330.58208 * 4 3 2 6 6 C 1.53007 * 117.50038 * 116.24951 * 4 3 2 7 7 C 1.53002 * 117.50006 * 184.91139 * 4 3 2 8 8 C 1.53005 * 117.49646 * 359.97438 * 7 4 3 9 9 C 1.52995 * 117.50169 * 145.02192 * 7 4 3 10 10 C 1.34778 * 119.99822 * 179.97438 * 2 1 3 11 11 O 1.21597 * 119.99734 * 180.02562 * 10 2 1 12 12 N 1.34769 * 120.00305 * 359.97438 * 10 2 1 13 13 C 1.46501 * 120.00169 * 179.97438 * 12 10 2 14 14 H 1.09004 * 109.47170 * 35.00251 * 13 12 10 15 15 C 1.52998 * 109.47225 * 155.00091 * 13 12 10 16 16 C 1.50706 * 109.47348 * 295.00169 * 15 13 12 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.50702 * 109.47519 * 275.00119 * 13 12 10 25 25 C 1.38230 * 119.99549 * 319.72891 * 24 13 12 26 26 C 1.38244 * 119.99798 * 179.78239 * 25 24 13 27 27 C 1.38234 * 119.99720 * 0.46563 * 26 25 24 28 28 C 1.38233 * 119.99981 * 359.76435 * 27 26 25 29 29 C 1.38233 * 120.00370 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47122 * 270.00310 * 1 2 3 31 31 H 1.08994 * 109.47518 * 30.00133 * 1 2 3 32 32 H 1.09002 * 109.47001 * 150.00191 * 1 2 3 33 33 H 1.09000 * 109.46731 * 29.99223 * 3 2 1 34 34 H 1.08997 * 109.47665 * 150.00092 * 3 2 1 35 35 H 1.09001 * 117.50139 * 214.97356 * 6 4 3 36 36 H 1.08997 * 117.49597 * 359.97438 * 6 4 3 37 37 H 1.08999 * 109.46798 * 60.00534 * 8 7 4 38 38 H 1.09001 * 109.47076 * 179.97438 * 8 7 4 39 39 H 1.08998 * 109.47309 * 300.00697 * 8 7 4 40 40 H 1.08997 * 109.47198 * 60.00179 * 9 7 4 41 41 H 1.09003 * 109.47441 * 180.02562 * 9 7 4 42 42 H 1.09002 * 109.46974 * 299.99658 * 9 7 4 43 43 H 0.97004 * 120.00036 * 0.02562 * 12 10 2 44 44 H 1.09001 * 109.47671 * 175.00378 * 15 13 12 45 45 H 1.09006 * 109.47297 * 55.00097 * 15 13 12 46 46 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 47 47 H 1.08001 * 120.00284 * 359.97438 * 25 24 13 48 48 H 1.08004 * 120.00038 * 180.24772 * 26 25 24 49 49 H 1.08001 * 119.99855 * 179.78311 * 27 26 25 50 50 H 1.08003 * 119.99933 * 180.02562 * 28 27 26 51 51 H 1.07994 * 120.00502 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.5453 0.9051 -2.1713 6 6 1.7991 3.0129 -1.9086 7 6 3.3083 2.9601 -1.6579 8 6 3.8432 3.6730 -0.4143 9 6 4.2285 2.9842 -2.8800 10 6 2.1388 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0016 13 6 2.1975 -3.6031 0.0016 14 1 3.1087 -3.4966 0.5903 15 6 1.3208 -4.6982 0.6123 16 6 1.0649 -4.3855 2.0642 17 1 1.4860 -3.4950 2.5072 18 6 0.2935 -5.2363 2.8271 19 7 -0.2188 -6.3209 2.2879 20 14 -0.0230 -4.8490 4.6269 21 1 -0.8751 -5.9112 5.2193 22 1 1.2699 -4.7874 5.3548 23 1 -0.7161 -3.5403 4.7372 24 6 2.5549 -3.9770 -1.4139 25 6 1.6433 -3.7749 -2.4332 26 6 1.9727 -4.1137 -3.7324 27 6 3.2102 -4.6633 -4.0106 28 6 4.1200 -4.8697 -2.9906 29 6 3.7922 -4.5270 -1.6922 30 1 -0.3633 0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6083 2.0283 0.5137 34 1 3.1499 1.1384 0.5138 35 1 1.4625 3.0649 -2.9440 36 1 1.1873 3.5551 -1.1876 37 1 4.4717 2.9882 0.1549 38 1 4.4316 4.5392 -0.7169 39 1 3.0076 3.9992 0.2051 40 1 3.6314 2.8843 -3.7864 41 1 4.7737 3.9278 -2.9058 42 1 4.9363 2.1577 -2.8182 43 1 0.4950 -2.3344 0.0016 44 1 1.8300 -5.6586 0.5318 45 1 0.3718 -4.7442 0.0779 46 1 -0.0542 -6.5222 1.3534 47 1 0.6748 -3.3496 -2.2151 48 1 1.2620 -3.9521 -4.5294 49 1 3.4663 -4.9312 -5.0251 50 1 5.0870 -5.2988 -3.2081 51 1 4.5028 -4.6886 -0.8952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595567960.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:58 Heat of formation + Delta-G solvation = 7.896650 kcal Electronic energy + Delta-G solvation = -28955.113717 eV Core-core repulsion = 25240.717465 eV Total energy + Delta-G solvation = -3714.396253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09082 -39.01284 -38.31534 -35.53425 -34.86278 -32.93411 -31.16234 -30.50713 -29.71573 -28.51747 -27.96678 -27.25295 -25.60383 -24.29750 -22.35249 -22.05944 -21.58148 -20.25664 -19.42447 -18.80679 -17.77904 -16.84676 -16.48956 -16.19383 -15.49530 -15.13378 -14.91834 -14.45340 -14.23368 -13.91245 -13.77683 -13.56821 -13.47321 -13.41609 -13.03077 -12.87033 -12.79946 -12.55825 -12.52328 -12.31056 -12.21273 -12.03875 -11.92032 -11.66580 -11.58339 -11.23470 -11.21745 -10.78070 -10.70982 -10.61550 -10.19748 -10.02525 -9.92916 -9.79331 -9.51859 -8.83683 -8.58130 -8.55080 -8.39968 -8.20383 -8.16940 -6.40828 -4.11356 1.74400 1.76808 2.98762 3.41022 3.43562 3.61880 3.62538 3.68073 4.14375 4.42183 4.50537 4.57151 4.62707 4.75394 4.93706 5.16173 5.23103 5.23537 5.24867 5.33772 5.36152 5.37309 5.49033 5.49733 5.52405 5.60855 5.69312 5.73699 5.74785 5.77809 5.81051 5.86664 5.87397 5.90680 6.00717 6.09709 6.12217 6.23546 6.31175 6.37224 6.50677 6.72601 6.80759 6.81838 6.92022 7.02805 7.17444 7.29987 7.37104 7.52282 8.09935 8.41727 8.44918 8.82004 9.09792 9.59922 10.99181 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004074 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.285009 B = 6871.469804 C = 9132.825917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.635 5.635 3 C 0.169 3.831 4 C -0.152 4.152 5 H 0.104 0.896 6 C -0.175 4.175 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.114 4.114 10 C 0.705 3.295 11 O -0.594 6.594 12 N -0.716 5.716 13 C 0.209 3.791 14 H 0.087 0.913 15 C 0.011 3.989 16 C -0.597 4.597 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.911 5.911 20 Si 1.067 2.933 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.289 1.289 24 C -0.072 4.072 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.396 0.604 44 H 0.025 0.975 45 H 0.014 0.986 46 H 0.269 0.731 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 15.971 -10.775 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.045 3.955 4 C -0.171 4.171 5 H 0.122 0.878 6 C -0.212 4.212 7 C -0.125 4.125 8 C -0.174 4.174 9 C -0.171 4.171 10 C 0.407 3.593 11 O -0.472 6.472 12 N -0.369 5.369 13 C 0.104 3.896 14 H 0.105 0.895 15 C -0.027 4.027 16 C -0.636 4.636 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.547 5.547 20 Si 0.896 3.104 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.215 1.215 24 C -0.074 4.074 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.153 4.153 28 C -0.140 4.140 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.232 0.768 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.079 0.921 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.134 0.866 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.174 15.387 -9.376 18.296 hybrid contribution 0.140 0.527 -1.536 1.630 sum 3.313 15.915 -10.912 19.578 Atomic orbital electron populations 1.21670 0.80130 1.02534 1.01788 1.46936 1.06088 1.04871 1.79399 1.20749 0.97424 0.83607 0.93725 1.22957 1.03744 0.91425 0.99006 0.87807 1.23345 0.94720 1.01174 1.01972 1.21560 0.92166 1.00995 0.97747 1.21352 1.00910 0.99615 0.95483 1.21339 0.98675 1.01874 0.95250 1.15924 0.85359 0.80436 0.77625 1.90869 1.11606 1.86249 1.58505 1.45225 1.09702 1.04068 1.77911 1.19907 0.96783 0.83009 0.89930 0.89528 1.19506 0.93915 0.92668 0.96575 1.21950 1.35624 1.11078 0.94900 0.93011 1.25793 0.93610 0.93435 1.05789 1.70797 1.43196 1.25145 1.15540 0.83560 0.76455 0.75652 0.74775 1.20824 1.21435 1.21542 1.20622 0.93555 0.96431 0.96780 1.20872 0.99089 1.00130 0.92457 1.21035 0.96779 1.00093 0.96439 1.20991 0.94477 1.01124 0.98687 1.21044 0.99244 1.00690 0.93054 1.21020 0.96224 0.98789 0.96559 0.92566 0.91273 0.91583 0.90959 0.89484 0.89211 0.88944 0.91854 0.92286 0.92458 0.92699 0.92286 0.92077 0.76845 0.95700 0.96827 0.92088 0.86855 0.86789 0.86815 0.86568 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.20 59.84 0.61 1.57 16 2 N -0.64 -9.44 2.87 -187.36 -0.54 -9.98 16 3 C 0.17 2.18 4.77 -4.04 -0.02 2.16 16 4 C -0.15 -1.81 5.73 -90.62 -0.52 -2.33 16 5 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 6 C -0.18 -1.65 9.47 -26.69 -0.25 -1.91 16 7 C -0.12 -1.26 2.70 -154.47 -0.42 -1.68 16 8 C -0.12 -1.05 8.86 37.16 0.33 -0.72 16 9 C -0.11 -1.09 9.85 37.15 0.37 -0.73 16 10 C 0.71 13.42 8.24 -86.92 -0.72 12.70 16 11 O -0.59 -13.30 15.58 5.28 0.08 -13.21 16 12 N -0.72 -13.64 3.91 -59.81 -0.23 -13.87 16 13 C 0.21 4.42 2.11 -69.08 -0.15 4.27 16 14 H 0.09 2.04 7.44 -51.93 -0.39 1.65 16 15 C 0.01 0.26 3.80 -27.88 -0.11 0.15 16 16 C -0.60 -16.15 8.84 -34.44 -0.30 -16.45 16 17 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 18 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 19 N -0.91 -26.94 13.65 55.43 0.76 -26.18 16 20 Si 1.07 24.83 29.90 -169.99 -5.08 19.75 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.07 -1.39 4.91 -104.62 -0.51 -1.90 16 25 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 29 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 33 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 34 H 0.09 1.30 7.05 -51.93 -0.37 0.93 16 35 H 0.09 0.80 8.05 -51.93 -0.42 0.39 16 36 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 38 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 39 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 40 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 41 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.40 7.01 6.33 -40.82 -0.26 6.75 16 44 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 45 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 46 H 0.27 7.91 7.22 -40.82 -0.29 7.62 16 47 H 0.11 1.85 7.73 -52.49 -0.41 1.44 16 48 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 49 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 51 H 0.12 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 415.20 15.07 6.26 6.26 Total: -1.00 -32.30 415.20 -11.23 -43.53 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.74 Total: 9.62 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.73 Total: -15.91 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.02 Total: -50.03 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.30 -11.23 -43.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567960.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.430 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds