Wall clock time and date at job start Tue Mar 31 2020 16:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00216 * 2 1 4 4 C 1.52996 * 109.46788 * 269.99970 * 3 2 1 5 5 H 1.08995 * 115.55613 * 330.58208 * 4 3 2 6 6 C 1.53007 * 117.50038 * 116.24951 * 4 3 2 7 7 C 1.53002 * 117.50006 * 184.91139 * 4 3 2 8 8 C 1.53005 * 117.49646 * 359.97438 * 7 4 3 9 9 C 1.52995 * 117.50169 * 145.02192 * 7 4 3 10 10 C 1.34778 * 119.99822 * 179.97438 * 2 1 3 11 11 O 1.21597 * 119.99734 * 180.02562 * 10 2 1 12 12 N 1.34769 * 120.00305 * 359.97438 * 10 2 1 13 13 C 1.46501 * 120.00169 * 179.97438 * 12 10 2 14 14 H 1.09004 * 109.47170 * 35.00251 * 13 12 10 15 15 C 1.52998 * 109.47225 * 155.00091 * 13 12 10 16 16 C 1.50706 * 109.47348 * 295.00169 * 15 13 12 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.50702 * 109.47519 * 275.00119 * 13 12 10 25 25 C 1.38230 * 119.99549 * 319.72891 * 24 13 12 26 26 C 1.38244 * 119.99798 * 179.78239 * 25 24 13 27 27 C 1.38234 * 119.99720 * 0.46563 * 26 25 24 28 28 C 1.38233 * 119.99981 * 359.76435 * 27 26 25 29 29 C 1.38233 * 120.00370 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47122 * 270.00310 * 1 2 3 31 31 H 1.08994 * 109.47518 * 30.00133 * 1 2 3 32 32 H 1.09002 * 109.47001 * 150.00191 * 1 2 3 33 33 H 1.09000 * 109.46731 * 29.99223 * 3 2 1 34 34 H 1.08997 * 109.47665 * 150.00092 * 3 2 1 35 35 H 1.09001 * 117.50139 * 214.97356 * 6 4 3 36 36 H 1.08997 * 117.49597 * 359.97438 * 6 4 3 37 37 H 1.08999 * 109.46798 * 60.00534 * 8 7 4 38 38 H 1.09001 * 109.47076 * 179.97438 * 8 7 4 39 39 H 1.08998 * 109.47309 * 300.00697 * 8 7 4 40 40 H 1.08997 * 109.47198 * 60.00179 * 9 7 4 41 41 H 1.09003 * 109.47441 * 180.02562 * 9 7 4 42 42 H 1.09002 * 109.46974 * 299.99658 * 9 7 4 43 43 H 0.97004 * 120.00036 * 0.02562 * 12 10 2 44 44 H 1.09001 * 109.47671 * 175.00378 * 15 13 12 45 45 H 1.09006 * 109.47297 * 55.00097 * 15 13 12 46 46 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 47 47 H 1.08001 * 120.00284 * 359.97438 * 25 24 13 48 48 H 1.08004 * 120.00038 * 180.24772 * 26 25 24 49 49 H 1.08001 * 119.99855 * 179.78311 * 27 26 25 50 50 H 1.08003 * 119.99933 * 180.02562 * 28 27 26 51 51 H 1.07994 * 120.00502 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.5453 0.9051 -2.1713 6 6 1.7991 3.0129 -1.9086 7 6 3.3083 2.9601 -1.6579 8 6 3.8432 3.6730 -0.4143 9 6 4.2285 2.9842 -2.8800 10 6 2.1388 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0016 13 6 2.1975 -3.6031 0.0016 14 1 3.1087 -3.4966 0.5903 15 6 1.3208 -4.6982 0.6123 16 6 1.0649 -4.3855 2.0642 17 1 1.4860 -3.4950 2.5072 18 6 0.2935 -5.2363 2.8271 19 7 -0.2188 -6.3209 2.2879 20 14 -0.0230 -4.8490 4.6269 21 1 -0.8751 -5.9112 5.2193 22 1 1.2699 -4.7874 5.3548 23 1 -0.7161 -3.5403 4.7372 24 6 2.5549 -3.9770 -1.4139 25 6 1.6433 -3.7749 -2.4332 26 6 1.9727 -4.1137 -3.7324 27 6 3.2102 -4.6633 -4.0106 28 6 4.1200 -4.8697 -2.9906 29 6 3.7922 -4.5270 -1.6922 30 1 -0.3633 0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6083 2.0283 0.5137 34 1 3.1499 1.1384 0.5138 35 1 1.4625 3.0649 -2.9440 36 1 1.1873 3.5551 -1.1876 37 1 4.4717 2.9882 0.1549 38 1 4.4316 4.5392 -0.7169 39 1 3.0076 3.9992 0.2051 40 1 3.6314 2.8843 -3.7864 41 1 4.7737 3.9278 -2.9058 42 1 4.9363 2.1577 -2.8182 43 1 0.4950 -2.3344 0.0016 44 1 1.8300 -5.6586 0.5318 45 1 0.3718 -4.7442 0.0779 46 1 -0.0542 -6.5222 1.3534 47 1 0.6748 -3.3496 -2.2151 48 1 1.2620 -3.9521 -4.5294 49 1 3.4663 -4.9312 -5.0251 50 1 5.0870 -5.2988 -3.2081 51 1 4.5028 -4.6886 -0.8952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595567960.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:57 Heat of formation + Delta-G solvation = -8.090990 kcal Electronic energy + Delta-G solvation = -28955.806993 eV Core-core repulsion = 25240.717465 eV Total energy + Delta-G solvation = -3715.089529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49655 -40.19770 -39.38880 -37.08792 -36.28174 -34.94253 -32.56308 -31.77957 -30.69574 -30.18279 -28.81908 -28.15183 -26.97245 -25.97130 -24.02022 -23.47109 -22.58621 -21.62464 -20.87358 -19.68309 -19.28467 -18.67142 -17.92516 -17.53663 -16.69676 -16.34185 -16.19962 -15.70470 -15.65336 -15.29972 -15.11688 -14.92427 -14.78896 -14.53274 -14.29384 -14.14773 -14.07939 -13.78222 -13.72513 -13.36822 -13.33244 -13.30144 -13.16112 -12.99123 -12.76433 -12.50980 -12.40801 -12.24800 -12.07323 -12.00964 -11.94343 -11.80043 -11.25784 -10.84642 -10.77430 -10.56768 -10.50382 -10.12743 -9.83708 -9.62018 -9.45696 -8.67017 -6.37994 0.43197 0.48138 1.51792 1.58637 1.69925 1.78850 2.17825 2.54566 2.77693 2.85791 3.06871 3.18816 3.71197 3.83531 3.87366 3.90655 3.94471 4.12643 4.18289 4.19196 4.24152 4.28154 4.32414 4.50915 4.52971 4.63823 4.66755 4.69253 4.70079 4.75845 4.83240 4.86755 4.92796 4.99496 5.02398 5.03826 5.06515 5.08971 5.10589 5.20556 5.23204 5.27967 5.44555 5.52974 5.53869 5.56435 5.59959 5.81169 5.94853 5.97506 6.10577 6.17708 6.56378 7.01228 7.41000 7.60769 8.73366 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004074 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.285009 B = 6871.469804 C = 9132.825917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.629 5.629 3 C 0.170 3.830 4 C -0.171 4.171 5 H 0.073 0.927 6 C -0.149 4.149 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.699 3.301 11 O -0.635 6.635 12 N -0.712 5.712 13 C 0.225 3.775 14 H 0.051 0.949 15 C 0.023 3.977 16 C -0.603 4.603 17 H 0.042 0.958 18 C -0.029 4.029 19 N -0.933 5.933 20 Si 1.112 2.888 21 H -0.282 1.282 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.100 4.100 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.134 4.134 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.402 0.598 44 H 0.000 1.000 45 H 0.008 0.992 46 H 0.257 0.743 47 H 0.116 0.884 48 H 0.147 0.853 49 H 0.154 0.846 50 H 0.145 0.855 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 18.200 -12.176 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.365 5.365 3 C 0.047 3.953 4 C -0.191 4.191 5 H 0.091 0.909 6 C -0.186 4.186 7 C -0.128 4.128 8 C -0.173 4.173 9 C -0.172 4.172 10 C 0.401 3.599 11 O -0.517 6.517 12 N -0.367 5.367 13 C 0.119 3.881 14 H 0.069 0.931 15 C -0.014 4.014 16 C -0.641 4.641 17 H 0.061 0.939 18 C -0.227 4.227 19 N -0.571 5.571 20 Si 0.934 3.066 21 H -0.208 1.208 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.140 4.140 29 C -0.152 4.152 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.239 0.761 44 H 0.018 0.982 45 H 0.026 0.974 46 H 0.066 0.934 47 H 0.134 0.866 48 H 0.165 0.835 49 H 0.171 0.829 50 H 0.163 0.837 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.087 17.659 -10.798 20.804 hybrid contribution 0.521 -0.151 -1.190 1.308 sum 2.608 17.508 -11.989 21.379 Atomic orbital electron populations 1.21906 0.77830 1.04171 1.02619 1.47026 1.07549 1.04044 1.77902 1.20870 0.96565 0.83220 0.94663 1.22701 1.07085 0.91771 0.97519 0.90901 1.23413 0.94086 0.98209 1.02843 1.21727 0.93147 0.99550 0.98369 1.21368 1.01345 0.99598 0.94971 1.21359 0.98508 1.02041 0.95318 1.16108 0.84978 0.81328 0.77512 1.90829 1.13565 1.86967 1.60373 1.45036 1.09799 1.03647 1.78168 1.19390 0.94582 0.82987 0.91164 0.93054 1.19283 0.93795 0.92701 0.95632 1.22190 1.35066 1.10554 0.96262 0.93944 1.27190 0.93155 0.92808 1.09589 1.70920 1.44723 1.26380 1.15044 0.82981 0.76929 0.76424 0.70238 1.20766 1.20449 1.19190 1.20481 0.95036 0.98700 0.95875 1.21009 0.98922 1.00699 0.93230 1.21439 0.97793 0.98802 0.96087 1.21481 0.93603 0.99232 1.00198 1.21394 1.00792 0.99831 0.91961 1.21165 0.96016 1.00041 0.98016 0.92068 0.87906 0.91725 0.87787 0.92300 0.88386 0.86945 0.93455 0.90850 0.91181 0.92243 0.90594 0.93872 0.76126 0.98196 0.97427 0.93365 0.86587 0.83496 0.82870 0.83717 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.20 127.77 1.30 2.98 16 2 N -0.63 -18.70 2.87 -864.93 -2.48 -21.18 16 3 C 0.17 4.31 4.77 86.38 0.41 4.72 16 4 C -0.17 -3.98 5.73 -10.79 -0.06 -4.04 16 5 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 6 C -0.15 -2.38 9.47 30.62 0.29 -2.09 16 7 C -0.13 -2.41 2.70 -52.15 -0.14 -2.55 16 8 C -0.12 -1.91 8.86 71.98 0.64 -1.27 16 9 C -0.12 -2.09 9.85 71.98 0.71 -1.38 16 10 C 0.70 27.81 8.24 179.06 1.47 29.28 16 11 O -0.64 -30.31 15.58 -4.02 -0.06 -30.37 16 12 N -0.71 -28.49 3.91 -461.40 -1.80 -30.29 16 13 C 0.22 10.18 2.11 44.25 0.09 10.27 16 14 H 0.05 2.64 7.44 -2.38 -0.02 2.63 16 15 C 0.02 1.20 3.80 29.85 0.11 1.31 16 16 C -0.60 -33.79 8.84 25.60 0.23 -33.56 16 17 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 18 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 19 N -0.93 -56.55 13.65 21.45 0.29 -56.26 16 20 Si 1.11 50.12 29.90 68.60 2.05 52.17 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 C -0.10 -4.00 4.91 -19.87 -0.10 -4.10 16 25 C -0.12 -4.18 9.32 22.27 0.21 -3.98 16 26 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 27 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 28 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 29 C -0.13 -5.01 9.67 22.27 0.22 -4.80 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.56 8.07 -2.39 -0.02 1.55 16 32 H 0.06 1.43 6.36 -2.39 -0.02 1.42 16 33 H 0.10 1.94 7.81 -2.39 -0.02 1.92 16 34 H 0.06 1.83 7.05 -2.39 -0.02 1.81 16 35 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 36 H 0.11 1.39 7.94 -2.39 -0.02 1.37 16 37 H 0.05 0.93 7.83 -2.39 -0.02 0.91 16 38 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 39 H 0.07 0.96 7.90 -2.39 -0.02 0.94 16 40 H 0.06 1.00 7.90 -2.39 -0.02 0.98 16 41 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16 42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.40 14.73 6.33 -92.71 -0.59 14.14 16 44 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 45 H 0.01 0.39 8.01 -2.38 -0.02 0.37 16 46 H 0.26 15.73 7.22 -92.71 -0.67 15.06 16 47 H 0.12 3.84 7.73 -2.91 -0.02 3.81 16 48 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 49 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 50 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 51 H 0.11 4.16 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -74.12 415.20 4.92 -69.20 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.41 Total: 36.92 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 6.52 Total: -20.19 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.00 Total: -107.73 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.06 Total: -30.37 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -74.12 4.92 -69.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567960.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.112 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds