Wall clock time and date at job start Tue Mar 31 2020 16:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99992 * 2 1 4 4 C 1.52996 * 109.47078 * 269.99529 * 3 2 1 5 5 H 1.09003 * 115.54648 * 29.33370 * 4 3 2 6 6 C 1.52999 * 117.49920 * 243.62244 * 4 3 2 7 7 C 1.53001 * 60.00115 * 252.51265 * 6 4 3 8 8 C 1.53000 * 117.49819 * 252.51467 * 7 6 4 9 9 C 1.52990 * 117.49913 * 107.48885 * 7 6 4 10 10 C 1.34774 * 119.99840 * 179.97438 * 2 1 3 11 11 O 1.21585 * 119.99924 * 180.02562 * 10 2 1 12 12 N 1.34782 * 120.00166 * 0.02562 * 10 2 1 13 13 C 1.46507 * 119.99978 * 174.92621 * 12 10 2 14 14 H 1.08999 * 109.47018 * 38.66964 * 13 12 10 15 15 C 1.52997 * 109.46760 * 158.67100 * 13 12 10 16 16 C 1.50700 * 109.47363 * 294.55826 * 15 13 12 17 17 H 1.07996 * 119.99743 * 355.40914 * 16 15 13 18 18 C 1.37873 * 120.00113 * 175.14204 * 16 15 13 19 19 N 1.31510 * 119.99912 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99982 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47012 * 90.00424 * 20 18 16 22 22 H 1.48497 * 109.47122 * 210.00557 * 20 18 16 23 23 H 1.48505 * 109.46795 * 330.00212 * 20 18 16 24 24 C 1.50707 * 109.46817 * 278.67194 * 13 12 10 25 25 C 1.38234 * 119.99869 * 319.72755 * 24 13 12 26 26 C 1.38238 * 119.99783 * 179.77015 * 25 24 13 27 27 C 1.38235 * 119.99772 * 0.50285 * 26 25 24 28 28 C 1.38245 * 120.00091 * 359.75430 * 27 26 25 29 29 C 1.38227 * 119.99750 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47496 * 270.00271 * 1 2 3 31 31 H 1.09002 * 109.47393 * 30.00067 * 1 2 3 32 32 H 1.09000 * 109.47146 * 149.99957 * 1 2 3 33 33 H 1.08993 * 109.46980 * 29.99981 * 3 2 1 34 34 H 1.09000 * 109.46667 * 149.99623 * 3 2 1 35 35 H 1.08995 * 117.50006 * 0.02562 * 6 4 3 36 36 H 1.09003 * 117.49443 * 145.02143 * 6 4 3 37 37 H 1.08994 * 109.47222 * 128.62112 * 8 7 6 38 38 H 1.08998 * 109.46830 * 248.61888 * 8 7 6 39 39 H 1.09001 * 109.47482 * 8.61756 * 8 7 6 40 40 H 1.08994 * 109.47472 * 351.38151 * 9 7 6 41 41 H 1.09005 * 109.47071 * 111.37797 * 9 7 6 42 42 H 1.09000 * 109.47451 * 231.37684 * 9 7 6 43 43 H 0.97002 * 119.99875 * 354.92735 * 12 10 2 44 44 H 1.08999 * 109.46728 * 174.55822 * 15 13 12 45 45 H 1.08998 * 109.46977 * 54.56134 * 15 13 12 46 46 H 0.97004 * 119.99713 * 180.02562 * 19 18 16 47 47 H 1.07997 * 119.99990 * 359.97438 * 25 24 13 48 48 H 1.07997 * 120.00412 * 180.22776 * 26 25 24 49 49 H 1.07994 * 120.00220 * 179.72215 * 27 26 25 50 50 H 1.07998 * 119.99737 * 179.97438 * 28 27 26 51 51 H 1.07998 * 119.99919 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 1.7095 1.3868 -2.1715 6 6 3.9075 1.7986 -1.9074 7 6 3.1052 3.0773 -1.6578 8 6 2.6654 3.8853 -2.8804 9 6 3.4528 3.8979 -0.4143 10 6 2.1388 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4649 -2.3344 0.0005 13 6 2.1932 -3.6008 -0.1111 14 1 3.1162 -3.5411 0.4655 15 6 1.3252 -4.7377 0.4318 16 6 1.1084 -4.5423 1.9102 17 1 1.6059 -3.7349 2.4268 18 6 0.2708 -5.3910 2.6023 19 7 0.0812 -5.2202 3.8924 20 14 -0.5961 -6.7828 1.7071 21 1 0.2556 -7.9988 1.7400 22 1 -1.8923 -7.0681 2.3730 23 1 -0.8406 -6.3875 0.2966 24 6 2.5210 -3.8658 -1.5580 25 6 1.5898 -3.5848 -2.5403 26 6 1.8923 -3.8235 -3.8679 27 6 3.1220 -4.3528 -4.2123 28 6 4.0512 -4.6387 -3.2294 29 6 3.7508 -4.3948 -1.9024 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1498 1.1383 0.5139 35 1 4.6829 1.5417 -1.1858 36 1 4.1220 1.5331 -2.9426 37 1 1.5954 4.0835 -2.8191 38 1 3.2089 4.8297 -2.9063 39 1 2.8787 3.3184 -3.7866 40 1 4.1534 3.3388 0.2059 41 1 3.9081 4.8410 -0.7169 42 1 2.5447 4.0988 0.1541 43 1 0.4977 -2.3360 0.0744 44 1 1.8261 -5.6906 0.2608 45 1 0.3628 -4.7362 -0.0799 46 1 -0.5078 -5.8175 4.3793 47 1 0.6273 -3.1758 -2.2709 48 1 1.1663 -3.6006 -4.6358 49 1 3.3567 -4.5434 -5.2490 50 1 5.0118 -5.0526 -3.4984 51 1 4.4765 -4.6185 -1.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595567961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:00 Heat of formation + Delta-G solvation = 15.756282 kcal Electronic energy + Delta-G solvation = -29031.006897 eV Core-core repulsion = 25316.951463 eV Total energy + Delta-G solvation = -3714.055433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.05525 -38.99400 -38.25664 -35.49437 -34.81480 -32.63554 -31.22405 -30.52470 -29.71781 -29.20932 -27.95746 -27.12072 -25.91747 -24.57687 -22.28584 -21.74240 -21.36960 -20.09785 -19.37713 -18.75410 -17.70320 -17.05797 -16.42601 -16.08803 -15.43093 -15.07016 -14.86291 -14.40678 -14.29165 -14.18145 -13.98330 -13.57851 -13.46416 -13.16023 -13.03847 -12.80613 -12.70455 -12.55795 -12.55069 -12.36361 -12.35418 -12.14202 -11.85975 -11.71265 -11.45406 -11.32195 -11.20346 -11.05878 -10.70572 -10.64020 -10.08172 -9.83904 -9.80691 -9.72474 -9.50467 -9.31373 -8.62699 -8.58666 -8.54358 -8.29586 -8.14023 -6.10142 -4.09603 1.72130 1.74948 3.02626 3.25985 3.34031 3.35875 3.67875 3.75675 4.13686 4.38312 4.48179 4.61786 4.71135 4.82534 4.95837 5.18569 5.21183 5.22625 5.23613 5.31760 5.37881 5.43926 5.45661 5.47606 5.52983 5.61175 5.73586 5.78465 5.79255 5.80531 5.85634 5.88221 5.91024 5.93674 5.97280 6.06715 6.23401 6.27145 6.29051 6.34506 6.47864 6.74371 6.77793 6.79841 6.89554 6.96901 7.08461 7.29970 7.35151 7.48554 7.66572 8.44324 8.50978 8.96635 9.15148 9.50584 11.02676 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.003872 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.815091 B = 7230.564481 C = 8991.196827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.635 5.635 3 C 0.168 3.832 4 C -0.156 4.156 5 H 0.100 0.900 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.708 3.292 11 O -0.591 6.591 12 N -0.717 5.717 13 C 0.212 3.788 14 H 0.089 0.911 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.874 3.126 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.074 4.074 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.397 0.603 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 13.721 -14.494 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.373 5.373 3 C 0.044 3.956 4 C -0.175 4.175 5 H 0.118 0.882 6 C -0.195 4.195 7 C -0.133 4.133 8 C -0.170 4.170 9 C -0.173 4.173 10 C 0.409 3.591 11 O -0.469 6.469 12 N -0.371 5.371 13 C 0.107 3.893 14 H 0.107 0.893 15 C -0.053 4.053 16 C -0.556 4.556 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.075 4.075 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.233 0.767 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.674 13.622 -14.315 19.940 hybrid contribution -1.145 -0.896 -0.402 1.508 sum 1.530 12.726 -14.717 19.516 Atomic orbital electron populations 1.21683 0.80221 1.02478 1.01914 1.46929 1.06007 1.04951 1.79418 1.20752 0.97556 0.83483 0.93766 1.22901 0.96841 0.98968 0.98804 0.88165 1.23222 0.94588 0.99577 1.02088 1.21612 1.04889 0.89145 0.97624 1.21328 1.00903 0.99217 0.95505 1.21342 1.01245 0.99163 0.95544 1.15875 0.85338 0.80373 0.77488 1.90856 1.11614 1.86204 1.58258 1.45184 1.10194 1.04117 1.77607 1.19795 0.97010 0.83123 0.89410 0.89253 1.19887 0.94842 0.92957 0.97571 1.21024 1.27932 1.15632 0.90978 0.90599 1.24986 0.96242 0.97230 0.94674 1.69910 1.37835 1.38472 1.07479 0.86872 0.79376 0.83172 0.80421 1.20207 1.21393 1.18942 1.20627 0.93569 0.96459 0.96896 1.20888 0.99098 1.00086 0.92462 1.21030 0.96908 1.00397 0.96065 1.20995 0.94427 1.01027 0.98786 1.21050 0.99157 1.00767 0.93095 1.21033 0.96352 0.98931 0.96155 0.92461 0.91383 0.91521 0.90752 0.89784 0.88501 0.89424 0.92457 0.92300 0.92675 0.92184 0.92342 0.92265 0.76726 0.95247 0.95778 0.92680 0.86765 0.86838 0.86868 0.86575 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.16 59.84 0.61 1.54 16 2 N -0.64 -9.41 2.87 -187.36 -0.54 -9.95 16 3 C 0.17 2.18 4.77 -4.04 -0.02 2.16 16 4 C -0.16 -1.85 5.73 -90.62 -0.52 -2.37 16 5 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.16 -1.92 9.47 -26.73 -0.25 -2.17 16 7 C -0.13 -1.31 2.70 -154.51 -0.42 -1.73 16 8 C -0.11 -0.95 9.85 37.16 0.37 -0.58 16 9 C -0.12 -1.02 8.86 37.15 0.33 -0.69 16 10 C 0.71 13.33 8.18 -86.92 -0.71 12.62 16 11 O -0.59 -13.05 15.62 5.29 0.08 -12.97 16 12 N -0.72 -13.39 3.92 -59.81 -0.23 -13.62 16 13 C 0.21 4.30 2.11 -69.08 -0.15 4.15 16 14 H 0.09 2.03 7.49 -51.93 -0.39 1.64 16 15 C -0.01 -0.34 3.56 -27.88 -0.10 -0.44 16 16 C -0.52 -13.95 9.40 -34.44 -0.32 -14.28 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 20 Si 0.87 20.82 27.57 -169.99 -4.69 16.13 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.00 6.40 56.52 0.36 -5.64 16 24 C -0.07 -1.35 4.86 -104.62 -0.51 -1.86 16 25 C -0.11 -1.76 9.32 -39.58 -0.37 -2.12 16 26 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 28 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 29 C -0.11 -1.81 9.67 -39.59 -0.38 -2.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 33 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 34 H 0.08 1.26 7.15 -51.93 -0.37 0.89 16 35 H 0.10 1.29 7.94 -51.93 -0.41 0.88 16 36 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 7.92 -51.93 -0.41 0.02 16 39 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 40 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 41 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 42 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 43 H 0.40 6.87 6.38 -40.82 -0.26 6.61 16 44 H 0.03 0.67 7.81 -51.93 -0.41 0.27 16 45 H 0.02 0.53 6.86 -51.93 -0.36 0.18 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.11 1.76 7.73 -52.49 -0.41 1.35 16 48 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 51 H 0.12 1.99 8.04 -52.49 -0.42 1.56 16 LS Contribution 412.83 15.07 6.22 6.22 Total: -1.00 -32.28 412.83 -10.89 -43.17 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.77 Total: 9.82 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.74 Total: -12.75 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.00 Total: -49.61 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.69 Total: 16.13 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.28 -10.89 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.926 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds