Wall clock time and date at job start Tue Mar 31 2020 16:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99992 * 2 1 4 4 C 1.52996 * 109.47078 * 269.99529 * 3 2 1 5 5 H 1.09003 * 115.54648 * 29.33370 * 4 3 2 6 6 C 1.52999 * 117.49920 * 243.62244 * 4 3 2 7 7 C 1.53001 * 60.00115 * 252.51265 * 6 4 3 8 8 C 1.53000 * 117.49819 * 252.51467 * 7 6 4 9 9 C 1.52990 * 117.49913 * 107.48885 * 7 6 4 10 10 C 1.34774 * 119.99840 * 179.97438 * 2 1 3 11 11 O 1.21585 * 119.99924 * 180.02562 * 10 2 1 12 12 N 1.34782 * 120.00166 * 0.02562 * 10 2 1 13 13 C 1.46507 * 119.99978 * 174.92621 * 12 10 2 14 14 H 1.08999 * 109.47018 * 38.66964 * 13 12 10 15 15 C 1.52997 * 109.46760 * 158.67100 * 13 12 10 16 16 C 1.50700 * 109.47363 * 294.55826 * 15 13 12 17 17 H 1.07996 * 119.99743 * 355.40914 * 16 15 13 18 18 C 1.37873 * 120.00113 * 175.14204 * 16 15 13 19 19 N 1.31510 * 119.99912 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99982 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47012 * 90.00424 * 20 18 16 22 22 H 1.48497 * 109.47122 * 210.00557 * 20 18 16 23 23 H 1.48505 * 109.46795 * 330.00212 * 20 18 16 24 24 C 1.50707 * 109.46817 * 278.67194 * 13 12 10 25 25 C 1.38234 * 119.99869 * 319.72755 * 24 13 12 26 26 C 1.38238 * 119.99783 * 179.77015 * 25 24 13 27 27 C 1.38235 * 119.99772 * 0.50285 * 26 25 24 28 28 C 1.38245 * 120.00091 * 359.75430 * 27 26 25 29 29 C 1.38227 * 119.99750 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47496 * 270.00271 * 1 2 3 31 31 H 1.09002 * 109.47393 * 30.00067 * 1 2 3 32 32 H 1.09000 * 109.47146 * 149.99957 * 1 2 3 33 33 H 1.08993 * 109.46980 * 29.99981 * 3 2 1 34 34 H 1.09000 * 109.46667 * 149.99623 * 3 2 1 35 35 H 1.08995 * 117.50006 * 0.02562 * 6 4 3 36 36 H 1.09003 * 117.49443 * 145.02143 * 6 4 3 37 37 H 1.08994 * 109.47222 * 128.62112 * 8 7 6 38 38 H 1.08998 * 109.46830 * 248.61888 * 8 7 6 39 39 H 1.09001 * 109.47482 * 8.61756 * 8 7 6 40 40 H 1.08994 * 109.47472 * 351.38151 * 9 7 6 41 41 H 1.09005 * 109.47071 * 111.37797 * 9 7 6 42 42 H 1.09000 * 109.47451 * 231.37684 * 9 7 6 43 43 H 0.97002 * 119.99875 * 354.92735 * 12 10 2 44 44 H 1.08999 * 109.46728 * 174.55822 * 15 13 12 45 45 H 1.08998 * 109.46977 * 54.56134 * 15 13 12 46 46 H 0.97004 * 119.99713 * 180.02562 * 19 18 16 47 47 H 1.07997 * 119.99990 * 359.97438 * 25 24 13 48 48 H 1.07997 * 120.00412 * 180.22776 * 26 25 24 49 49 H 1.07994 * 120.00220 * 179.72215 * 27 26 25 50 50 H 1.07998 * 119.99737 * 179.97438 * 28 27 26 51 51 H 1.07998 * 119.99919 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 1.7095 1.3868 -2.1715 6 6 3.9075 1.7986 -1.9074 7 6 3.1052 3.0773 -1.6578 8 6 2.6654 3.8853 -2.8804 9 6 3.4528 3.8979 -0.4143 10 6 2.1388 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4649 -2.3344 0.0005 13 6 2.1932 -3.6008 -0.1111 14 1 3.1162 -3.5411 0.4655 15 6 1.3252 -4.7377 0.4318 16 6 1.1084 -4.5423 1.9102 17 1 1.6059 -3.7349 2.4268 18 6 0.2708 -5.3910 2.6023 19 7 0.0812 -5.2202 3.8924 20 14 -0.5961 -6.7828 1.7071 21 1 0.2556 -7.9988 1.7400 22 1 -1.8923 -7.0681 2.3730 23 1 -0.8406 -6.3875 0.2966 24 6 2.5210 -3.8658 -1.5580 25 6 1.5898 -3.5848 -2.5403 26 6 1.8923 -3.8235 -3.8679 27 6 3.1220 -4.3528 -4.2123 28 6 4.0512 -4.6387 -3.2294 29 6 3.7508 -4.3948 -1.9024 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1498 1.1383 0.5139 35 1 4.6829 1.5417 -1.1858 36 1 4.1220 1.5331 -2.9426 37 1 1.5954 4.0835 -2.8191 38 1 3.2089 4.8297 -2.9063 39 1 2.8787 3.3184 -3.7866 40 1 4.1534 3.3388 0.2059 41 1 3.9081 4.8410 -0.7169 42 1 2.5447 4.0988 0.1541 43 1 0.4977 -2.3360 0.0744 44 1 1.8261 -5.6906 0.2608 45 1 0.3628 -4.7362 -0.0799 46 1 -0.5078 -5.8175 4.3793 47 1 0.6273 -3.1758 -2.2709 48 1 1.1663 -3.6006 -4.6358 49 1 3.3567 -4.5434 -5.2490 50 1 5.0118 -5.0526 -3.4984 51 1 4.4765 -4.6185 -1.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595567961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:00 Heat of formation + Delta-G solvation = -0.998589 kcal Electronic energy + Delta-G solvation = -29031.733443 eV Core-core repulsion = 25316.951463 eV Total energy + Delta-G solvation = -3714.781979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43247 -40.13898 -39.33615 -36.94384 -36.23598 -34.67648 -32.62532 -31.70620 -30.99037 -30.53468 -28.77840 -28.00616 -27.29349 -26.07770 -23.59053 -23.27896 -22.49251 -21.47992 -20.78415 -19.63000 -19.10852 -18.96012 -17.79459 -17.39746 -16.64309 -16.41673 -16.20134 -15.99904 -15.45515 -15.22185 -15.14979 -14.95249 -14.57742 -14.42799 -14.37418 -14.18261 -13.95580 -13.79195 -13.74069 -13.52618 -13.32998 -13.21069 -13.03013 -12.92444 -12.75343 -12.54913 -12.42665 -12.40763 -11.99099 -11.91736 -11.72614 -11.68967 -11.41725 -11.16634 -10.77960 -10.70785 -10.53989 -10.07070 -9.75996 -9.56774 -9.40572 -8.27488 -6.32595 0.50114 0.55923 1.38086 1.38916 1.49988 1.76027 2.25191 2.36062 2.75898 2.92990 3.06262 3.20831 3.70699 3.83232 3.93399 3.94533 4.03047 4.19777 4.20055 4.27565 4.31942 4.34670 4.40658 4.52718 4.55406 4.59673 4.72126 4.73521 4.75800 4.81530 4.87688 4.89689 4.92983 5.03969 5.06529 5.07604 5.10199 5.15157 5.17547 5.23875 5.26630 5.30093 5.49795 5.55010 5.61019 5.62296 5.64232 5.66234 5.88832 6.03867 6.18057 6.27272 6.73873 7.08086 7.31348 7.68361 8.88990 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.003872 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.815091 B = 7230.564481 C = 8991.196827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.631 5.631 3 C 0.167 3.833 4 C -0.160 4.160 5 H 0.102 0.898 6 C -0.179 4.179 7 C -0.106 4.106 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.700 3.300 11 O -0.633 6.633 12 N -0.715 5.715 13 C 0.223 3.777 14 H 0.049 0.951 15 C -0.004 4.004 16 C -0.518 4.518 17 H 0.027 0.973 18 C 0.012 3.988 19 N -0.948 5.948 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.240 1.240 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.131 4.131 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.403 0.597 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.266 0.734 47 H 0.121 0.879 48 H 0.146 0.854 49 H 0.150 0.850 50 H 0.142 0.858 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 14.319 -18.159 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.367 5.367 3 C 0.044 3.956 4 C -0.179 4.179 5 H 0.120 0.880 6 C -0.216 4.216 7 C -0.107 4.107 8 C -0.169 4.169 9 C -0.176 4.176 10 C 0.402 3.598 11 O -0.514 6.514 12 N -0.369 5.369 13 C 0.117 3.883 14 H 0.067 0.933 15 C -0.042 4.042 16 C -0.556 4.556 17 H 0.045 0.955 18 C -0.185 4.185 19 N -0.588 5.588 20 Si 0.769 3.231 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.163 1.163 24 C -0.099 4.099 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.141 4.141 29 C -0.150 4.150 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.240 0.760 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.139 0.861 48 H 0.164 0.836 49 H 0.168 0.832 50 H 0.160 0.840 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.854 14.257 -17.996 22.975 hybrid contribution -0.495 -0.998 0.775 1.358 sum 0.359 13.259 -17.220 21.736 Atomic orbital electron populations 1.21920 0.77870 1.04415 1.02501 1.47028 1.07508 1.04125 1.78058 1.20867 0.96669 0.83192 0.94838 1.22807 0.96382 1.00988 0.97754 0.88038 1.23190 0.94484 1.02485 1.01456 1.21731 1.01942 0.88303 0.98692 1.21364 1.01824 0.99389 0.94278 1.21399 1.01693 0.99459 0.95001 1.16097 0.84998 0.81331 0.77411 1.90819 1.13575 1.86929 1.60120 1.45054 1.10322 1.03808 1.77721 1.19381 0.94865 0.83102 0.90958 0.93321 1.19731 0.95890 0.93912 0.94623 1.21159 1.27105 1.14107 0.93248 0.95455 1.25902 0.97122 1.00147 0.95344 1.70070 1.39157 1.40095 1.09503 0.85733 0.77918 0.79211 0.80213 1.19860 1.20973 1.16321 1.20415 0.95032 0.98842 0.95576 1.21036 0.99006 1.00367 0.93160 1.21420 0.97848 0.99148 0.95701 1.21461 0.93635 0.99139 1.00310 1.21369 1.00621 1.00078 0.92032 1.21160 0.96140 1.00112 0.97545 0.92527 0.87915 0.91132 0.87915 0.92632 0.90679 0.89485 0.91249 0.90885 0.92852 0.93475 0.90697 0.91028 0.75997 0.95247 0.94293 0.92516 0.86124 0.83603 0.83216 0.84006 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.16 127.77 1.30 2.94 16 2 N -0.63 -18.90 2.87 -864.94 -2.49 -21.38 16 3 C 0.17 4.37 4.77 86.38 0.41 4.78 16 4 C -0.16 -3.71 5.73 -10.79 -0.06 -3.77 16 5 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 6 C -0.18 -4.47 9.47 30.59 0.29 -4.18 16 7 C -0.11 -1.97 2.70 -52.18 -0.14 -2.11 16 8 C -0.11 -1.58 9.85 71.98 0.71 -0.87 16 9 C -0.12 -1.92 8.86 71.98 0.64 -1.28 16 10 C 0.70 27.71 8.18 179.05 1.46 29.18 16 11 O -0.63 -30.03 15.62 -3.98 -0.06 -30.09 16 12 N -0.71 -27.85 3.92 -461.39 -1.81 -29.66 16 13 C 0.22 9.53 2.11 44.25 0.09 9.62 16 14 H 0.05 2.43 7.49 -2.39 -0.02 2.41 16 15 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 16 C -0.52 -29.19 9.40 25.60 0.24 -28.95 16 17 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 18 C 0.01 0.69 5.47 84.65 0.46 1.15 16 19 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 20 Si 0.95 42.84 27.57 68.60 1.89 44.73 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.24 -9.84 6.40 99.48 0.64 -9.20 16 24 C -0.10 -3.59 4.86 -19.86 -0.10 -3.69 16 25 C -0.12 -3.68 9.32 22.27 0.21 -3.47 16 26 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 27 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 28 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 29 C -0.13 -4.53 9.67 22.27 0.22 -4.32 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.07 1.49 6.44 -2.39 -0.02 1.47 16 33 H 0.10 2.06 7.70 -2.39 -0.02 2.04 16 34 H 0.06 1.78 7.15 -2.39 -0.02 1.76 16 35 H 0.07 2.18 7.94 -2.39 -0.02 2.16 16 36 H 0.09 2.12 8.05 -2.39 -0.02 2.11 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.85 7.92 -2.39 -0.02 0.83 16 39 H 0.05 0.79 7.90 -2.39 -0.02 0.77 16 40 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 41 H 0.07 0.98 7.92 -2.38 -0.02 0.96 16 42 H 0.07 1.00 7.83 -2.39 -0.02 0.98 16 43 H 0.40 14.27 6.38 -92.71 -0.59 13.68 16 44 H 0.03 1.36 7.81 -2.39 -0.02 1.34 16 45 H 0.04 1.68 6.86 -2.39 -0.02 1.67 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.12 3.51 7.73 -2.91 -0.02 3.49 16 48 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 49 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 50 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 51 H 0.11 3.90 8.04 -2.91 -0.02 3.88 16 Total: -1.00 -74.88 412.83 4.58 -70.31 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.24 Total: 38.28 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 6.51 Total: -13.96 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.00 Total: -109.26 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.89 Total: 44.73 kcal Total: -74.88 4.58 -70.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.308 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds