Wall clock time and date at job start Tue Mar 31 2020 15:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.96220 * 2 1 4 4 C 1.38282 * 120.14227 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.96275 * 179.97438 * 4 3 2 6 6 C 1.38110 * 120.06939 * 0.02562 * 4 3 2 7 7 C 1.38869 * 119.92878 * 359.97438 * 6 4 3 8 8 N 1.39929 * 120.06923 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00134 * 324.53215 * 8 7 6 10 10 O 1.21289 * 119.99662 * 4.90252 * 9 8 7 11 11 C 1.50700 * 120.00296 * 184.90410 * 9 8 7 12 12 H 1.08996 * 109.46820 * 34.84859 * 11 9 8 13 13 C 1.53001 * 109.46873 * 274.84831 * 11 9 8 14 14 N 1.46896 * 109.47223 * 154.84940 * 11 9 8 15 15 C 1.46842 * 111.00080 * 173.66183 * 14 11 9 16 16 C 1.53039 * 109.52561 * 185.83656 * 15 14 11 17 17 C 1.53112 * 109.27807 * 300.82422 * 16 15 14 18 18 C 1.53115 * 109.16538 * 57.65236 * 17 16 15 19 19 H 1.09006 * 109.53547 * 62.30352 * 18 17 16 20 20 C 1.50702 * 109.50826 * 182.40451 * 18 17 16 21 21 H 1.07993 * 119.99747 * 119.79959 * 20 18 17 22 22 C 1.37869 * 119.99682 * 299.80511 * 20 18 17 23 23 N 1.31517 * 120.00660 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99936 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47373 * 59.99999 * 24 22 20 26 26 H 1.48502 * 109.47422 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47331 * 299.99729 * 24 22 20 28 28 C 1.46845 * 110.99967 * 297.87305 * 14 11 9 29 29 C 1.38107 * 119.97062 * 180.25490 * 2 1 3 30 30 H 1.09004 * 109.46848 * 90.00278 * 1 2 3 31 31 H 1.09003 * 109.46947 * 209.99840 * 1 2 3 32 32 H 1.08991 * 109.47658 * 330.00224 * 1 2 3 33 33 H 1.08001 * 119.92655 * 359.97438 * 3 2 1 34 34 H 1.08992 * 109.47264 * 270.02214 * 5 4 3 35 35 H 1.09006 * 109.46967 * 30.02780 * 5 4 3 36 36 H 1.09004 * 109.46882 * 150.02039 * 5 4 3 37 37 H 1.07995 * 120.03607 * 179.97438 * 6 4 3 38 38 H 0.97000 * 120.00062 * 144.52817 * 8 7 6 39 39 H 1.09004 * 109.46937 * 179.97438 * 13 11 9 40 40 H 1.09006 * 109.47098 * 60.00022 * 13 11 9 41 41 H 1.08996 * 109.47420 * 299.99660 * 13 11 9 42 42 H 1.08999 * 109.46394 * 305.85625 * 15 14 11 43 43 H 1.09002 * 109.46197 * 65.82108 * 15 14 11 44 44 H 1.08999 * 109.50055 * 180.87853 * 16 15 14 45 45 H 1.09002 * 109.53120 * 60.78292 * 16 15 14 46 46 H 1.08999 * 109.52553 * 297.74509 * 17 16 15 47 47 H 1.08999 * 109.52233 * 177.56069 * 17 16 15 48 48 H 0.96991 * 120.00693 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.46353 * 294.17673 * 28 14 11 50 50 H 1.08997 * 109.46664 * 54.14205 * 28 14 11 51 51 H 1.08008 * 120.03143 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2024 0.0005 5 6 4.3290 2.5104 -0.0001 6 6 4.2762 0.0093 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2875 -2.4059 0.0000 9 6 5.4477 -2.5119 -0.6777 10 8 5.9286 -1.5355 -1.2129 11 6 6.1472 -3.8435 -0.7706 12 1 5.4057 -4.6405 -0.8242 13 6 7.0249 -4.0457 0.4663 14 7 6.9859 -3.8730 -1.9762 15 6 7.7984 -5.0952 -2.0223 16 6 8.7614 -5.0248 -3.2096 17 6 7.9577 -4.8747 -4.5042 18 6 7.0840 -3.6208 -4.4108 19 1 7.7192 -2.7406 -4.3112 20 6 6.2455 -3.4978 -5.6570 21 1 5.1680 -3.4988 -5.5850 22 6 6.8541 -3.3841 -6.8889 23 7 8.1664 -3.3825 -6.9765 24 14 5.8149 -3.2324 -8.4336 25 1 4.9639 -2.0189 -8.3406 26 1 6.7028 -3.1238 -9.6190 27 1 4.9517 -4.4331 -8.5695 28 6 6.1696 -3.7320 -3.1887 29 6 2.1969 -1.1964 -0.0053 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 1.6558 2.1323 -0.0004 34 1 4.5095 2.8252 -1.0278 35 1 3.7370 3.2680 0.5135 36 1 5.2819 2.3838 0.5139 37 1 5.3561 0.0134 0.0005 38 1 3.9392 -3.1688 0.4874 39 1 7.5305 -5.0091 0.3994 40 1 6.4025 -4.0238 1.3610 41 1 7.7664 -3.2487 0.5199 42 1 8.3681 -5.1878 -1.0976 43 1 7.1459 -5.9611 -2.1348 44 1 9.3534 -5.9390 -3.2526 45 1 9.4240 -4.1674 -3.0911 46 1 7.3240 -5.7507 -4.6432 47 1 8.6409 -4.7807 -5.3482 48 1 8.5945 -3.3021 -7.8431 49 1 5.5247 -4.6041 -3.2958 50 1 5.5562 -2.8343 -3.1112 51 1 1.6569 -2.1318 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:27 Heat of formation + Delta-G solvation = -16.884976 kcal Electronic energy + Delta-G solvation = -28927.304352 eV Core-core repulsion = 25211.833488 eV Total energy + Delta-G solvation = -3715.470864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.65366 -39.14649 -37.73502 -34.92742 -34.29628 -33.54734 -32.24298 -30.55340 -30.14778 -29.02381 -27.30876 -26.77542 -25.33118 -24.34695 -22.96905 -21.63382 -21.08875 -20.72799 -19.66409 -18.64163 -17.34436 -16.79659 -16.35742 -16.10139 -15.63804 -15.28927 -14.72092 -14.43026 -14.27462 -14.02311 -13.80336 -13.52725 -13.28839 -13.25355 -12.96451 -12.79752 -12.61788 -12.59972 -12.52372 -12.17873 -11.97925 -11.85437 -11.82090 -11.62332 -11.46913 -11.34683 -11.14066 -10.88393 -10.66967 -10.60589 -10.09887 -10.06047 -9.79269 -9.47277 -9.38654 -8.99737 -8.64428 -8.55075 -8.23975 -8.07778 -7.69449 -5.91113 -3.96688 1.28645 1.38243 2.72966 3.02237 3.36385 3.40584 3.43589 3.75505 4.31271 4.53611 4.65831 4.71188 4.79706 5.08867 5.10857 5.17368 5.21011 5.27829 5.33268 5.38762 5.44919 5.49411 5.55388 5.61893 5.64811 5.69588 5.76683 5.76891 5.80574 5.91051 6.05799 6.08542 6.10769 6.28389 6.33873 6.39598 6.40472 6.53814 6.56798 6.65439 6.71848 6.77503 7.01459 7.09110 7.24685 7.33304 7.45983 7.62714 7.76703 7.82645 8.16988 8.23611 8.31293 8.54318 9.06633 9.66844 11.15137 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.003529 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.141734 B = 7932.715911 C = 9507.527742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.160 3.840 8 N -0.682 5.682 9 C 0.517 3.483 10 O -0.483 6.483 11 C 0.068 3.932 12 H 0.054 0.946 13 C -0.143 4.143 14 N -0.515 5.515 15 C 0.061 3.939 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.059 3.941 19 H 0.036 0.964 20 C -0.513 4.513 21 H 0.051 0.949 22 C 0.064 3.936 23 N -0.889 5.889 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.278 1.278 28 C 0.067 3.933 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.029 0.971 47 H 0.091 0.909 48 H 0.260 0.740 49 H 0.015 0.985 50 H 0.063 0.937 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 2.344 19.349 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.069 4.069 3 C -0.160 4.160 4 C -0.066 4.066 5 C -0.170 4.170 6 C -0.146 4.146 7 C 0.066 3.934 8 N -0.329 5.329 9 C 0.304 3.696 10 O -0.353 6.353 11 C -0.044 4.044 12 H 0.071 0.929 13 C -0.201 4.201 14 N -0.241 5.241 15 C -0.066 4.066 16 C -0.154 4.154 17 C -0.149 4.149 18 C 0.040 3.960 19 H 0.055 0.945 20 C -0.552 4.552 21 H 0.069 0.931 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.204 1.204 28 C -0.060 4.060 29 C -0.176 4.176 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.242 0.758 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.033 0.967 50 H 0.081 0.919 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.874 3.415 18.794 21.062 hybrid contribution -1.402 -1.145 -0.792 1.976 sum -10.276 2.270 18.001 20.852 Atomic orbital electron populations 1.20765 0.91124 1.02525 1.02414 1.19612 0.95785 0.92523 0.98933 1.20842 0.93485 0.97389 1.04263 1.19797 0.93575 0.95137 0.98049 1.20783 0.99839 0.93667 1.02682 1.21185 1.01229 0.90314 1.01872 1.17704 0.90627 0.85819 0.99237 1.43644 1.23953 1.12815 1.52481 1.20830 0.79838 0.91653 0.77308 1.90744 1.63334 1.38479 1.42773 1.21499 0.95486 0.92878 0.94582 0.92867 1.21861 1.00045 1.03591 0.94554 1.61847 1.24027 1.37524 1.00721 1.22155 0.95749 0.89440 0.99296 1.21671 0.97620 1.00304 0.95849 1.21669 0.99158 0.98294 0.95821 1.18608 0.93098 0.94752 0.89519 0.94549 1.21089 0.92695 1.50085 0.91313 0.93104 1.24905 0.94865 0.95184 0.98770 1.69877 1.07995 1.50483 1.24393 0.86707 0.80230 0.78580 0.82753 1.20325 1.21275 1.20421 1.22386 0.95507 0.98595 0.89492 1.20721 0.92089 0.98239 1.06530 0.91103 0.91671 0.91591 0.86270 0.90840 0.91704 0.91466 0.84296 0.75801 0.90879 0.92268 0.90900 0.91621 0.95808 0.93357 0.91910 0.95213 0.89045 0.93045 0.96651 0.91890 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.07 -0.76 5.88 -104.65 -0.62 -1.37 16 3 C -0.14 -1.63 9.35 -39.55 -0.37 -2.00 16 4 C -0.06 -0.84 5.88 -104.65 -0.62 -1.45 16 5 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 6 C -0.13 -1.87 8.35 -39.39 -0.33 -2.19 16 7 C 0.16 2.21 6.29 -83.69 -0.53 1.69 16 8 N -0.68 -8.69 5.33 -9.86 -0.05 -8.74 16 9 C 0.52 8.35 5.86 -10.99 -0.06 8.29 16 10 O -0.48 -9.92 13.04 5.55 0.07 -9.85 16 11 C 0.07 1.01 2.47 -68.87 -0.17 0.84 16 12 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 13 C -0.14 -1.64 8.74 37.16 0.32 -1.31 16 14 N -0.52 -9.81 4.22 -228.09 -0.96 -10.77 16 15 C 0.06 1.05 5.08 -3.84 -0.02 1.03 16 16 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 17 C -0.11 -2.69 5.03 -26.61 -0.13 -2.82 16 18 C 0.06 1.55 2.26 -91.69 -0.21 1.35 16 19 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 20 C -0.51 -14.71 8.56 -34.44 -0.29 -15.00 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.83 5.30 -17.82 -0.09 1.73 16 23 N -0.89 -26.08 11.36 55.43 0.63 -25.45 16 24 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.07 1.51 4.39 -3.83 -0.02 1.50 16 29 C -0.16 -1.85 9.62 -39.40 -0.38 -2.23 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.14 2.28 6.25 -52.49 -0.33 1.95 16 38 H 0.41 3.66 8.83 -40.82 -0.36 3.30 16 39 H 0.07 0.76 6.20 -51.93 -0.32 0.44 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.95 5.86 -51.93 -0.30 0.64 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 1.54 6.34 -51.93 -0.33 1.21 16 51 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -33.00 397.71 -10.97 -43.97 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.68 Total: 3.70 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.95 Total: -15.80 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.39 Total: -44.96 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.00 -10.97 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.089 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds