Wall clock time and date at job start Tue Mar 31 2020 15:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.96220 * 2 1 4 4 C 1.38282 * 120.14227 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.96275 * 179.97438 * 4 3 2 6 6 C 1.38110 * 120.06939 * 0.02562 * 4 3 2 7 7 C 1.38869 * 119.92878 * 359.97438 * 6 4 3 8 8 N 1.39929 * 120.06923 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00134 * 324.53215 * 8 7 6 10 10 O 1.21289 * 119.99662 * 4.90252 * 9 8 7 11 11 C 1.50700 * 120.00296 * 184.90410 * 9 8 7 12 12 H 1.08996 * 109.46820 * 34.84859 * 11 9 8 13 13 C 1.53001 * 109.46873 * 274.84831 * 11 9 8 14 14 N 1.46896 * 109.47223 * 154.84940 * 11 9 8 15 15 C 1.46842 * 111.00080 * 173.66183 * 14 11 9 16 16 C 1.53039 * 109.52561 * 185.83656 * 15 14 11 17 17 C 1.53112 * 109.27807 * 300.82422 * 16 15 14 18 18 C 1.53115 * 109.16538 * 57.65236 * 17 16 15 19 19 H 1.09006 * 109.53547 * 62.30352 * 18 17 16 20 20 C 1.50702 * 109.50826 * 182.40451 * 18 17 16 21 21 H 1.07993 * 119.99747 * 119.79959 * 20 18 17 22 22 C 1.37869 * 119.99682 * 299.80511 * 20 18 17 23 23 N 1.31517 * 120.00660 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99936 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47373 * 59.99999 * 24 22 20 26 26 H 1.48502 * 109.47422 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47331 * 299.99729 * 24 22 20 28 28 C 1.46845 * 110.99967 * 297.87305 * 14 11 9 29 29 C 1.38107 * 119.97062 * 180.25490 * 2 1 3 30 30 H 1.09004 * 109.46848 * 90.00278 * 1 2 3 31 31 H 1.09003 * 109.46947 * 209.99840 * 1 2 3 32 32 H 1.08991 * 109.47658 * 330.00224 * 1 2 3 33 33 H 1.08001 * 119.92655 * 359.97438 * 3 2 1 34 34 H 1.08992 * 109.47264 * 270.02214 * 5 4 3 35 35 H 1.09006 * 109.46967 * 30.02780 * 5 4 3 36 36 H 1.09004 * 109.46882 * 150.02039 * 5 4 3 37 37 H 1.07995 * 120.03607 * 179.97438 * 6 4 3 38 38 H 0.97000 * 120.00062 * 144.52817 * 8 7 6 39 39 H 1.09004 * 109.46937 * 179.97438 * 13 11 9 40 40 H 1.09006 * 109.47098 * 60.00022 * 13 11 9 41 41 H 1.08996 * 109.47420 * 299.99660 * 13 11 9 42 42 H 1.08999 * 109.46394 * 305.85625 * 15 14 11 43 43 H 1.09002 * 109.46197 * 65.82108 * 15 14 11 44 44 H 1.08999 * 109.50055 * 180.87853 * 16 15 14 45 45 H 1.09002 * 109.53120 * 60.78292 * 16 15 14 46 46 H 1.08999 * 109.52553 * 297.74509 * 17 16 15 47 47 H 1.08999 * 109.52233 * 177.56069 * 17 16 15 48 48 H 0.96991 * 120.00693 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.46353 * 294.17673 * 28 14 11 50 50 H 1.08997 * 109.46664 * 54.14205 * 28 14 11 51 51 H 1.08008 * 120.03143 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2024 0.0005 5 6 4.3290 2.5104 -0.0001 6 6 4.2762 0.0093 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2875 -2.4059 0.0000 9 6 5.4477 -2.5119 -0.6777 10 8 5.9286 -1.5355 -1.2129 11 6 6.1472 -3.8435 -0.7706 12 1 5.4057 -4.6405 -0.8242 13 6 7.0249 -4.0457 0.4663 14 7 6.9859 -3.8730 -1.9762 15 6 7.7984 -5.0952 -2.0223 16 6 8.7614 -5.0248 -3.2096 17 6 7.9577 -4.8747 -4.5042 18 6 7.0840 -3.6208 -4.4108 19 1 7.7192 -2.7406 -4.3112 20 6 6.2455 -3.4978 -5.6570 21 1 5.1680 -3.4988 -5.5850 22 6 6.8541 -3.3841 -6.8889 23 7 8.1664 -3.3825 -6.9765 24 14 5.8149 -3.2324 -8.4336 25 1 4.9639 -2.0189 -8.3406 26 1 6.7028 -3.1238 -9.6190 27 1 4.9517 -4.4331 -8.5695 28 6 6.1696 -3.7320 -3.1887 29 6 2.1969 -1.1964 -0.0053 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 1.6558 2.1323 -0.0004 34 1 4.5095 2.8252 -1.0278 35 1 3.7370 3.2680 0.5135 36 1 5.2819 2.3838 0.5139 37 1 5.3561 0.0134 0.0005 38 1 3.9392 -3.1688 0.4874 39 1 7.5305 -5.0091 0.3994 40 1 6.4025 -4.0238 1.3610 41 1 7.7664 -3.2487 0.5199 42 1 8.3681 -5.1878 -1.0976 43 1 7.1459 -5.9611 -2.1348 44 1 9.3534 -5.9390 -3.2526 45 1 9.4240 -4.1674 -3.0911 46 1 7.3240 -5.7507 -4.6432 47 1 8.6409 -4.7807 -5.3482 48 1 8.5945 -3.3021 -7.8431 49 1 5.5247 -4.6041 -3.2958 50 1 5.5562 -2.8343 -3.1112 51 1 1.6569 -2.1318 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:26 Heat of formation + Delta-G solvation = -37.205490 kcal Electronic energy + Delta-G solvation = -28928.185516 eV Core-core repulsion = 25211.833488 eV Total energy + Delta-G solvation = -3716.352028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81658 -40.31890 -39.17173 -36.10320 -35.99344 -34.41018 -34.06368 -31.90787 -31.66310 -30.42478 -28.13468 -27.65709 -27.08898 -25.85350 -24.46634 -23.15008 -22.14695 -22.02829 -20.81600 -20.41290 -18.69521 -18.22662 -17.85456 -17.26809 -16.85672 -16.58464 -16.44638 -15.91104 -15.48049 -15.25585 -15.00219 -14.79927 -14.62943 -14.39093 -14.24945 -14.06548 -14.02863 -13.89034 -13.45850 -13.34178 -13.22293 -13.10012 -12.88833 -12.85046 -12.73556 -12.65546 -12.50927 -12.50199 -12.40651 -12.02523 -11.78675 -11.72524 -11.39264 -11.14073 -10.89560 -10.84208 -10.54853 -10.39161 -9.50287 -9.16113 -9.08766 -8.10790 -6.25681 0.30036 0.41560 1.36550 1.39362 1.46778 1.53442 1.95441 2.39573 2.79520 2.99662 3.15428 3.59525 3.89139 3.89651 4.01786 4.06429 4.15095 4.22831 4.29446 4.36340 4.40288 4.41240 4.49955 4.55815 4.64605 4.67649 4.74544 4.75750 4.82896 4.87186 4.88651 4.91641 4.93084 4.95605 5.06175 5.08453 5.16656 5.25626 5.27281 5.38572 5.38965 5.44378 5.48413 5.59652 5.64336 5.69222 5.90821 6.09536 6.12762 6.16590 6.21919 6.41303 6.48571 6.85975 7.17177 7.41751 8.93960 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.003529 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.141734 B = 7932.715911 C = 9507.527742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.078 4.078 5 C -0.112 4.112 6 C -0.156 4.156 7 C 0.139 3.861 8 N -0.664 5.664 9 C 0.513 3.487 10 O -0.540 6.540 11 C 0.067 3.933 12 H 0.082 0.918 13 C -0.136 4.136 14 N -0.537 5.537 15 C 0.065 3.935 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.058 3.942 19 H -0.016 1.016 20 C -0.541 4.541 21 H 0.045 0.955 22 C 0.015 3.985 23 N -0.914 5.914 24 Si 0.954 3.046 25 H -0.277 1.277 26 H -0.279 1.279 27 H -0.266 1.266 28 C 0.088 3.912 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.426 0.574 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.057 0.943 48 H 0.261 0.739 49 H 0.019 0.981 50 H 0.035 0.965 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 0.893 21.117 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.163 4.163 4 C -0.079 4.079 5 C -0.169 4.169 6 C -0.176 4.176 7 C 0.045 3.955 8 N -0.312 5.312 9 C 0.301 3.699 10 O -0.414 6.414 11 C -0.044 4.044 12 H 0.099 0.901 13 C -0.193 4.193 14 N -0.263 5.263 15 C -0.062 4.062 16 C -0.149 4.149 17 C -0.141 4.141 18 C 0.039 3.961 19 H 0.002 0.998 20 C -0.579 4.579 21 H 0.063 0.937 22 C -0.184 4.184 23 N -0.553 5.553 24 Si 0.779 3.221 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.039 4.039 29 C -0.178 4.178 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.054 0.946 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.255 1.930 20.610 23.563 hybrid contribution -0.702 -0.618 -1.307 1.607 sum -11.957 1.313 19.303 22.745 Atomic orbital electron populations 1.20828 0.88546 1.04148 1.03053 1.20081 0.97663 0.92036 0.97260 1.21192 0.92927 0.98854 1.03331 1.20094 0.94627 0.95239 0.97947 1.20813 1.00008 0.93467 1.02565 1.21159 1.00192 0.92025 1.04210 1.17927 0.91617 0.85678 1.00243 1.43426 1.22799 1.13333 1.51616 1.21220 0.80332 0.91612 0.76743 1.90734 1.65031 1.40288 1.45367 1.21681 0.96233 0.92629 0.93892 0.90088 1.21878 0.99680 1.03819 0.93940 1.61658 1.24720 1.39192 1.00704 1.22203 0.95431 0.88955 0.99618 1.21600 0.97699 1.01010 0.94634 1.21450 0.98500 0.96864 0.97302 1.18503 0.93132 0.93652 0.90838 0.99777 1.21456 0.92752 1.50789 0.92917 0.93680 1.25721 0.96086 0.94645 1.01911 1.70030 1.09473 1.50694 1.25133 0.85676 0.78731 0.78799 0.78846 1.20238 1.20400 1.19117 1.21887 0.94608 0.97378 0.90038 1.21021 0.91213 0.99768 1.05825 0.90762 0.90182 0.89970 0.83783 0.91484 0.89105 0.91881 0.87103 0.73522 0.88864 0.88959 0.92764 0.87734 0.94301 0.90292 0.93721 0.95291 0.92456 0.92949 0.96272 0.94613 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.07 -1.42 5.88 -19.88 -0.12 -1.54 16 3 C -0.14 -3.15 9.35 22.29 0.21 -2.94 16 4 C -0.08 -2.06 5.88 -19.88 -0.12 -2.17 16 5 C -0.11 -2.41 10.01 71.24 0.71 -1.69 16 6 C -0.16 -4.87 8.35 22.39 0.19 -4.68 16 7 C 0.14 3.87 6.29 38.15 0.24 4.11 16 8 N -0.66 -16.57 5.33 -303.51 -1.62 -18.19 16 9 C 0.51 16.79 5.86 87.66 0.51 17.31 16 10 O -0.54 -23.66 13.04 -3.06 -0.04 -23.70 16 11 C 0.07 1.89 2.47 44.17 0.11 2.00 16 12 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.14 -2.72 8.74 71.98 0.63 -2.09 16 14 N -0.54 -20.32 4.22 -875.54 -3.69 -24.01 16 15 C 0.06 2.08 5.08 86.33 0.44 2.51 16 16 C -0.11 -4.34 6.09 30.64 0.19 -4.15 16 17 C -0.10 -5.12 5.03 30.67 0.15 -4.97 16 18 C 0.06 3.19 2.26 -11.49 -0.03 3.17 16 19 H -0.02 -1.04 8.14 -2.38 -0.02 -1.05 16 20 C -0.54 -32.31 8.56 25.60 0.22 -32.09 16 21 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 22 C 0.02 0.90 5.30 84.65 0.45 1.35 16 23 N -0.91 -55.71 11.36 21.44 0.24 -55.47 16 24 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.09 4.14 4.39 86.33 0.38 4.52 16 29 C -0.16 -3.54 9.62 22.39 0.22 -3.33 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 36 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.11 4.04 6.25 -2.91 -0.02 4.02 16 38 H 0.43 6.79 8.83 -92.71 -0.82 5.97 16 39 H 0.09 1.51 6.20 -2.38 -0.01 1.49 16 40 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.10 2.60 5.86 -2.39 -0.01 2.58 16 43 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 45 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 3.22 6.17 -2.39 -0.01 3.21 16 48 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.04 1.83 6.34 -2.39 -0.02 1.82 16 51 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -78.51 397.71 2.11 -76.40 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.09 Total: 22.44 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.10 Total: -25.42 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -5.07 Total: -97.66 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.04 Total: -23.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -78.51 2.11 -76.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.194 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds