Wall clock time and date at job start Tue Mar 31 2020 15:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.96291 * 2 1 4 4 C 1.38279 * 120.14121 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.96629 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.07078 * 359.95186 * 4 3 2 7 7 C 1.38871 * 119.92796 * 0.02979 * 6 4 3 8 8 N 1.39927 * 120.07347 * 179.97438 * 7 6 4 9 9 C 1.34773 * 119.99461 * 33.11989 * 8 7 6 10 10 O 1.21294 * 120.00600 * 5.16530 * 9 8 7 11 11 C 1.50706 * 119.99826 * 185.16260 * 9 8 7 12 12 H 1.08996 * 109.47285 * 329.31744 * 11 9 8 13 13 C 1.53006 * 109.47002 * 89.31603 * 11 9 8 14 14 N 1.46898 * 109.47230 * 209.31285 * 11 9 8 15 15 C 1.46849 * 110.99958 * 52.45070 * 14 11 9 16 16 C 1.53035 * 109.52578 * 174.16091 * 15 14 11 17 17 C 1.53123 * 109.27864 * 59.17370 * 16 15 14 18 18 C 1.53114 * 109.16275 * 302.34731 * 17 16 15 19 19 H 1.09001 * 109.50382 * 297.67705 * 18 17 16 20 20 C 1.50704 * 109.50438 * 177.59490 * 18 17 16 21 21 H 1.07999 * 119.99903 * 240.00571 * 20 18 17 22 22 C 1.37877 * 119.99683 * 60.00219 * 20 18 17 23 23 N 1.31513 * 120.00188 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99633 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47072 * 89.99775 * 24 22 20 26 26 H 1.48500 * 109.47079 * 209.99678 * 24 22 20 27 27 H 1.48498 * 109.47205 * 330.00059 * 24 22 20 28 28 C 1.46847 * 111.00129 * 288.23683 * 14 11 9 29 29 C 1.38113 * 119.96245 * 179.72446 * 2 1 3 30 30 H 1.09002 * 109.47448 * 90.00204 * 1 2 3 31 31 H 1.08996 * 109.47300 * 329.99991 * 1 2 3 32 32 H 1.09003 * 109.46953 * 209.99790 * 1 2 3 33 33 H 1.08002 * 119.93171 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47629 * 89.99638 * 5 4 3 35 35 H 1.08997 * 109.46911 * 210.00071 * 5 4 3 36 36 H 1.08996 * 109.46731 * 329.99608 * 5 4 3 37 37 H 1.07999 * 120.03422 * 179.97438 * 6 4 3 38 38 H 0.96995 * 120.00424 * 213.12211 * 8 7 6 39 39 H 1.09003 * 109.46967 * 300.00294 * 13 11 9 40 40 H 1.08996 * 109.46985 * 59.99958 * 13 11 9 41 41 H 1.08997 * 109.47206 * 180.02562 * 13 11 9 42 42 H 1.09006 * 109.45949 * 294.17265 * 15 14 11 43 43 H 1.08994 * 109.46676 * 54.13781 * 15 14 11 44 44 H 1.08996 * 109.50443 * 179.11640 * 16 15 14 45 45 H 1.09002 * 109.50061 * 299.23692 * 16 15 14 46 46 H 1.09001 * 109.52095 * 62.25700 * 17 16 15 47 47 H 1.09004 * 109.52277 * 182.44251 * 17 16 15 48 48 H 0.96998 * 119.99782 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.46533 * 305.85371 * 28 14 11 50 50 H 1.09002 * 109.45810 * 65.82660 * 28 14 11 51 51 H 1.07999 * 120.03703 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0001 7 6 3.5856 -1.1956 0.0003 8 7 4.2874 -2.4062 0.0002 9 6 5.4713 -2.4986 0.6376 10 8 5.8840 -1.5626 1.2894 11 6 6.2823 -3.7651 0.5407 12 1 5.6127 -4.6175 0.4265 13 6 7.2140 -3.6826 -0.6702 14 7 7.0809 -3.9299 1.7626 15 6 6.2365 -3.8338 2.9601 16 6 7.0717 -4.1537 4.2019 17 6 8.2373 -3.1651 4.2957 18 6 9.0732 -3.2509 3.0157 19 1 9.4944 -4.2519 2.9225 20 6 10.1885 -2.2391 3.0744 21 1 10.2560 -1.4656 2.3238 22 6 11.1228 -2.3010 4.0866 23 7 11.0402 -3.2426 5.0010 24 14 12.5048 -1.0464 4.1598 25 1 12.0712 0.1212 4.9685 26 1 13.7017 -1.6644 4.7849 27 1 12.8403 -0.5986 2.7842 28 6 8.1799 -2.9571 1.8082 29 6 2.1968 -1.1965 0.0058 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8900 0.5138 33 1 1.6559 2.1323 -0.0004 34 1 4.5100 2.8258 1.0263 35 1 5.2817 2.3832 -0.5153 36 1 3.7370 3.2674 -0.5149 37 1 5.3562 0.0132 -0.0009 38 1 3.9219 -3.1787 -0.4585 39 1 6.6214 -3.5603 -1.5769 40 1 7.8836 -2.8302 -0.5560 41 1 7.8003 -4.5988 -0.7406 42 1 5.8363 -2.8232 3.0421 43 1 5.4139 -4.5447 2.8826 44 1 6.4484 -4.0669 5.0919 45 1 7.4609 -5.1691 4.1270 46 1 7.8484 -2.1532 4.4097 47 1 8.8596 -3.4161 5.1547 48 1 11.6977 -3.2863 5.7128 49 1 8.7690 -3.0314 0.8941 50 1 7.7706 -1.9506 1.8956 51 1 1.6568 -2.1318 0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:31 Heat of formation + Delta-G solvation = -16.364908 kcal Electronic energy + Delta-G solvation = -29186.049522 eV Core-core repulsion = 25470.601209 eV Total energy + Delta-G solvation = -3715.448313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.88012 -39.35064 -37.48471 -35.01731 -34.18334 -33.62462 -32.40173 -30.62509 -29.85185 -28.99231 -27.38142 -26.86174 -25.24198 -24.45376 -22.97714 -21.25890 -21.19500 -21.05538 -19.76870 -18.72198 -17.18321 -16.81670 -16.43162 -16.12564 -15.72568 -15.25298 -14.65423 -14.51815 -14.17197 -14.11143 -14.00462 -13.64318 -13.35013 -13.09232 -13.01020 -12.74443 -12.68528 -12.52820 -12.44897 -12.12709 -12.03196 -11.98139 -11.85368 -11.65926 -11.30551 -11.20889 -11.03942 -10.85274 -10.60150 -10.54962 -10.24034 -9.97228 -9.94934 -9.68493 -9.35822 -8.94140 -8.65104 -8.60048 -8.22880 -8.12892 -7.53300 -5.89444 -3.94478 1.19677 1.29077 2.64445 3.01898 3.36345 3.42527 3.45966 3.68215 4.31866 4.53239 4.62520 4.63901 4.79052 5.02182 5.10423 5.12216 5.20653 5.24340 5.25553 5.34819 5.40477 5.47689 5.55779 5.60061 5.60611 5.69434 5.75537 5.83373 5.86126 5.97638 6.03521 6.15834 6.24061 6.25726 6.31540 6.37046 6.47074 6.57173 6.60109 6.66025 6.81870 6.91146 7.00646 7.13219 7.29613 7.31739 7.46558 7.66424 7.78873 7.85709 8.16884 8.20195 8.28317 8.58683 9.09398 9.69048 11.16698 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003128 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.182649 B = 8948.539080 C = 9818.212844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.063 4.063 5 C -0.114 4.114 6 C -0.127 4.127 7 C 0.160 3.840 8 N -0.680 5.680 9 C 0.483 3.517 10 O -0.500 6.500 11 C 0.068 3.932 12 H 0.094 0.906 13 C -0.144 4.144 14 N -0.507 5.507 15 C 0.050 3.950 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.057 3.943 19 H 0.030 0.970 20 C -0.509 4.509 21 H 0.053 0.947 22 C 0.062 3.938 23 N -0.890 5.890 24 Si 0.889 3.111 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.047 3.953 29 C -0.158 4.158 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.089 0.911 48 H 0.258 0.742 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.035 2.590 -12.842 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.161 4.161 4 C -0.063 4.063 5 C -0.171 4.171 6 C -0.147 4.147 7 C 0.066 3.934 8 N -0.327 5.327 9 C 0.269 3.731 10 O -0.372 6.372 11 C -0.045 4.045 12 H 0.112 0.888 13 C -0.202 4.202 14 N -0.230 5.230 15 C -0.078 4.078 16 C -0.152 4.152 17 C -0.148 4.148 18 C 0.038 3.962 19 H 0.048 0.952 20 C -0.547 4.547 21 H 0.071 0.929 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.080 4.080 29 C -0.179 4.179 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.243 0.757 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.320 2.672 -12.190 22.999 hybrid contribution 0.085 1.003 -0.016 1.007 sum -19.235 3.676 -12.205 23.075 Atomic orbital electron populations 1.20765 0.91108 1.02755 1.02195 1.19624 0.95789 0.92538 0.98839 1.20834 0.93438 0.97412 1.04434 1.19792 0.93588 0.95101 0.97843 1.20792 0.99939 0.93660 1.02679 1.21061 1.00962 0.90409 1.02273 1.17773 0.90729 0.86143 0.98783 1.44014 1.22085 1.12036 1.54520 1.22829 0.80713 0.91678 0.77858 1.90740 1.68673 1.39780 1.38000 1.21986 0.94920 0.92640 0.94932 0.88760 1.21881 0.99395 1.04535 0.94340 1.62595 1.09707 1.51363 0.99385 1.22203 0.94914 0.99508 0.91144 1.21632 0.97995 1.01221 0.94304 1.21642 0.94535 0.95384 1.03235 1.18642 0.91543 0.97266 0.88721 0.95187 1.21148 1.09693 1.13243 1.10665 0.92906 1.24927 0.97678 0.95580 0.95724 1.69894 1.35748 1.32889 1.14394 0.86647 0.81882 0.81643 0.78124 1.20827 1.21322 1.19994 1.22685 0.90795 0.93559 1.00921 1.20708 0.92049 0.98190 1.06914 0.91224 0.91521 0.91617 0.86252 0.90871 0.91386 0.91623 0.84751 0.75725 0.92414 0.90932 0.90134 0.93989 0.93027 0.93626 0.92236 0.95056 0.89219 0.93181 0.92094 0.92646 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.07 -0.69 5.88 -104.65 -0.62 -1.31 16 3 C -0.14 -1.54 9.35 -39.55 -0.37 -1.91 16 4 C -0.06 -0.77 5.88 -104.65 -0.62 -1.39 16 5 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 6 C -0.13 -1.82 8.31 -39.39 -0.33 -2.14 16 7 C 0.16 2.08 6.28 -83.69 -0.53 1.55 16 8 N -0.68 -8.04 5.34 -9.86 -0.05 -8.09 16 9 C 0.48 7.30 5.73 -10.98 -0.06 7.24 16 10 O -0.50 -9.70 10.18 5.55 0.06 -9.65 16 11 C 0.07 0.97 2.97 -68.86 -0.20 0.77 16 12 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.14 -1.84 8.53 37.16 0.32 -1.52 16 14 N -0.51 -9.44 4.74 -228.07 -1.08 -10.52 16 15 C 0.05 0.94 4.87 -3.83 -0.02 0.92 16 16 C -0.11 -2.35 6.09 -26.65 -0.16 -2.51 16 17 C -0.11 -2.75 5.02 -26.61 -0.13 -2.88 16 18 C 0.06 1.48 2.26 -91.69 -0.21 1.27 16 19 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.51 -14.44 8.56 -34.44 -0.29 -14.73 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -26.03 11.35 55.43 0.63 -25.40 16 24 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.05 1.03 3.82 -3.83 -0.01 1.01 16 29 C -0.16 -1.73 9.62 -39.39 -0.38 -2.11 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.13 2.19 6.40 -52.49 -0.34 1.85 16 38 H 0.41 3.33 8.82 -40.82 -0.36 2.97 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.09 6.19 -51.93 -0.32 0.76 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.87 6.06 -51.93 -0.31 0.56 16 43 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.06 1.31 5.81 -51.93 -0.30 1.01 16 50 H 0.06 1.34 5.73 -51.93 -0.30 1.04 16 51 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -32.37 392.04 -11.09 -43.46 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.54 Total: 4.76 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.99 Total: -17.35 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.50 Total: -44.02 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.37 -11.09 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.100 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds