Wall clock time and date at job start Tue Mar 31 2020 15:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.96291 * 2 1 4 4 C 1.38279 * 120.14121 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.96629 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.07078 * 359.95186 * 4 3 2 7 7 C 1.38871 * 119.92796 * 0.02979 * 6 4 3 8 8 N 1.39927 * 120.07347 * 179.97438 * 7 6 4 9 9 C 1.34773 * 119.99461 * 33.11989 * 8 7 6 10 10 O 1.21294 * 120.00600 * 5.16530 * 9 8 7 11 11 C 1.50706 * 119.99826 * 185.16260 * 9 8 7 12 12 H 1.08996 * 109.47285 * 329.31744 * 11 9 8 13 13 C 1.53006 * 109.47002 * 89.31603 * 11 9 8 14 14 N 1.46898 * 109.47230 * 209.31285 * 11 9 8 15 15 C 1.46849 * 110.99958 * 52.45070 * 14 11 9 16 16 C 1.53035 * 109.52578 * 174.16091 * 15 14 11 17 17 C 1.53123 * 109.27864 * 59.17370 * 16 15 14 18 18 C 1.53114 * 109.16275 * 302.34731 * 17 16 15 19 19 H 1.09001 * 109.50382 * 297.67705 * 18 17 16 20 20 C 1.50704 * 109.50438 * 177.59490 * 18 17 16 21 21 H 1.07999 * 119.99903 * 240.00571 * 20 18 17 22 22 C 1.37877 * 119.99683 * 60.00219 * 20 18 17 23 23 N 1.31513 * 120.00188 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99633 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47072 * 89.99775 * 24 22 20 26 26 H 1.48500 * 109.47079 * 209.99678 * 24 22 20 27 27 H 1.48498 * 109.47205 * 330.00059 * 24 22 20 28 28 C 1.46847 * 111.00129 * 288.23683 * 14 11 9 29 29 C 1.38113 * 119.96245 * 179.72446 * 2 1 3 30 30 H 1.09002 * 109.47448 * 90.00204 * 1 2 3 31 31 H 1.08996 * 109.47300 * 329.99991 * 1 2 3 32 32 H 1.09003 * 109.46953 * 209.99790 * 1 2 3 33 33 H 1.08002 * 119.93171 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47629 * 89.99638 * 5 4 3 35 35 H 1.08997 * 109.46911 * 210.00071 * 5 4 3 36 36 H 1.08996 * 109.46731 * 329.99608 * 5 4 3 37 37 H 1.07999 * 120.03422 * 179.97438 * 6 4 3 38 38 H 0.96995 * 120.00424 * 213.12211 * 8 7 6 39 39 H 1.09003 * 109.46967 * 300.00294 * 13 11 9 40 40 H 1.08996 * 109.46985 * 59.99958 * 13 11 9 41 41 H 1.08997 * 109.47206 * 180.02562 * 13 11 9 42 42 H 1.09006 * 109.45949 * 294.17265 * 15 14 11 43 43 H 1.08994 * 109.46676 * 54.13781 * 15 14 11 44 44 H 1.08996 * 109.50443 * 179.11640 * 16 15 14 45 45 H 1.09002 * 109.50061 * 299.23692 * 16 15 14 46 46 H 1.09001 * 109.52095 * 62.25700 * 17 16 15 47 47 H 1.09004 * 109.52277 * 182.44251 * 17 16 15 48 48 H 0.96998 * 119.99782 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.46533 * 305.85371 * 28 14 11 50 50 H 1.09002 * 109.45810 * 65.82660 * 28 14 11 51 51 H 1.07999 * 120.03703 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0001 7 6 3.5856 -1.1956 0.0003 8 7 4.2874 -2.4062 0.0002 9 6 5.4713 -2.4986 0.6376 10 8 5.8840 -1.5626 1.2894 11 6 6.2823 -3.7651 0.5407 12 1 5.6127 -4.6175 0.4265 13 6 7.2140 -3.6826 -0.6702 14 7 7.0809 -3.9299 1.7626 15 6 6.2365 -3.8338 2.9601 16 6 7.0717 -4.1537 4.2019 17 6 8.2373 -3.1651 4.2957 18 6 9.0732 -3.2509 3.0157 19 1 9.4944 -4.2519 2.9225 20 6 10.1885 -2.2391 3.0744 21 1 10.2560 -1.4656 2.3238 22 6 11.1228 -2.3010 4.0866 23 7 11.0402 -3.2426 5.0010 24 14 12.5048 -1.0464 4.1598 25 1 12.0712 0.1212 4.9685 26 1 13.7017 -1.6644 4.7849 27 1 12.8403 -0.5986 2.7842 28 6 8.1799 -2.9571 1.8082 29 6 2.1968 -1.1965 0.0058 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8900 0.5138 33 1 1.6559 2.1323 -0.0004 34 1 4.5100 2.8258 1.0263 35 1 5.2817 2.3832 -0.5153 36 1 3.7370 3.2674 -0.5149 37 1 5.3562 0.0132 -0.0009 38 1 3.9219 -3.1787 -0.4585 39 1 6.6214 -3.5603 -1.5769 40 1 7.8836 -2.8302 -0.5560 41 1 7.8003 -4.5988 -0.7406 42 1 5.8363 -2.8232 3.0421 43 1 5.4139 -4.5447 2.8826 44 1 6.4484 -4.0669 5.0919 45 1 7.4609 -5.1691 4.1270 46 1 7.8484 -2.1532 4.4097 47 1 8.8596 -3.4161 5.1547 48 1 11.6977 -3.2863 5.7128 49 1 8.7690 -3.0314 0.8941 50 1 7.7706 -1.9506 1.8956 51 1 1.6568 -2.1318 0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:30 Heat of formation + Delta-G solvation = -36.273429 kcal Electronic energy + Delta-G solvation = -29186.912820 eV Core-core repulsion = 25470.601209 eV Total energy + Delta-G solvation = -3716.311611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03418 -40.42876 -38.93066 -36.14744 -35.84934 -34.42358 -34.22706 -31.80530 -31.64634 -30.33170 -28.15326 -27.67559 -27.10181 -25.95192 -24.38782 -23.04339 -22.23319 -22.09217 -20.95481 -20.41378 -18.60881 -18.15826 -17.83897 -17.30216 -16.86603 -16.69471 -16.25541 -15.78275 -15.69522 -15.42435 -14.92290 -14.89161 -14.48181 -14.34293 -14.20828 -14.02548 -13.97091 -13.87731 -13.71931 -13.38144 -13.22510 -13.01722 -12.87931 -12.87339 -12.69987 -12.57806 -12.53792 -12.45613 -12.12713 -12.01106 -11.83113 -11.72108 -11.36762 -11.23595 -11.07884 -10.88374 -10.64237 -10.38581 -9.52881 -9.10102 -9.03488 -8.09129 -6.22432 0.27496 0.39710 1.37596 1.38524 1.48983 1.53237 2.01768 2.41103 2.78891 2.96522 3.17191 3.64261 3.87737 3.89100 3.94386 4.11355 4.19627 4.20997 4.28111 4.34005 4.39782 4.44345 4.47540 4.65208 4.66857 4.71592 4.71885 4.79275 4.83245 4.86626 4.88749 4.89972 4.93571 5.03627 5.07023 5.10665 5.18758 5.26007 5.27838 5.36586 5.38374 5.44945 5.49576 5.61560 5.64298 5.68174 5.91989 6.08862 6.10107 6.16699 6.17446 6.44156 6.45860 6.88954 7.13853 7.44478 8.95701 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003128 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.182649 B = 8948.539080 C = 9818.212844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.113 4.113 6 C -0.158 4.158 7 C 0.142 3.858 8 N -0.660 5.660 9 C 0.484 3.516 10 O -0.550 6.550 11 C 0.067 3.933 12 H 0.140 0.860 13 C -0.140 4.140 14 N -0.511 5.511 15 C 0.057 3.943 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.056 3.944 19 H 0.000 1.000 20 C -0.534 4.534 21 H 0.044 0.956 22 C 0.014 3.986 23 N -0.914 5.914 24 Si 0.952 3.048 25 H -0.279 1.279 26 H -0.278 1.278 27 H -0.269 1.269 28 C 0.068 3.932 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.427 0.573 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.021 0.979 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.007 0.993 47 H 0.059 0.941 48 H 0.261 0.739 49 H 0.062 0.938 50 H 0.031 0.969 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.062 1.969 -14.317 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.164 4.164 4 C -0.078 4.078 5 C -0.170 4.170 6 C -0.178 4.178 7 C 0.048 3.952 8 N -0.308 5.308 9 C 0.271 3.729 10 O -0.426 6.426 11 C -0.045 4.045 12 H 0.158 0.842 13 C -0.198 4.198 14 N -0.234 5.234 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.140 4.140 18 C 0.037 3.963 19 H 0.018 0.982 20 C -0.573 4.573 21 H 0.062 0.938 22 C -0.184 4.184 23 N -0.554 5.554 24 Si 0.778 3.222 25 H -0.205 1.205 26 H -0.203 1.203 27 H -0.193 1.193 28 C -0.059 4.059 29 C -0.176 4.176 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.026 0.974 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.392 2.025 -13.706 26.331 hybrid contribution 0.938 1.226 0.401 1.595 sum -21.454 3.251 -13.304 25.453 Atomic orbital electron populations 1.20830 0.88472 1.03780 1.03487 1.20093 0.97683 0.92012 0.97038 1.21159 0.92738 0.98948 1.03524 1.20043 0.94698 0.95033 0.98034 1.20812 0.99888 0.93734 1.02546 1.20999 0.99670 0.92277 1.04852 1.17939 0.91730 0.85783 0.99749 1.43713 1.20914 1.12583 1.53564 1.22842 0.81393 0.91213 0.77452 1.90744 1.69988 1.41405 1.40457 1.22219 0.95301 0.93861 0.93124 0.84237 1.21874 0.99236 1.03463 0.95216 1.62503 1.09906 1.49779 1.01220 1.22135 0.95277 0.99421 0.90221 1.21545 0.96803 0.99572 0.96608 1.21437 0.95724 0.95303 1.01565 1.18566 0.91924 0.94851 0.90988 0.98152 1.21487 1.11163 1.13811 1.10846 0.93810 1.25702 1.00016 0.97456 0.95274 1.70023 1.36481 1.34172 1.14711 0.85649 0.79018 0.79207 0.78351 1.20493 1.20292 1.19335 1.22222 0.91519 0.93199 0.98985 1.21015 0.91028 0.99775 1.05795 0.89643 0.90594 0.90580 0.83928 0.91413 0.92319 0.89137 0.88035 0.73355 0.88922 0.94015 0.89471 0.96043 0.88971 0.91696 0.92135 0.97406 0.92237 0.93017 0.92018 0.95092 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.07 -1.20 5.88 -19.88 -0.12 -1.32 16 3 C -0.15 -2.88 9.35 22.29 0.21 -2.68 16 4 C -0.08 -1.93 5.88 -19.88 -0.12 -2.04 16 5 C -0.11 -2.40 10.01 71.24 0.71 -1.68 16 6 C -0.16 -4.68 8.31 22.39 0.19 -4.49 16 7 C 0.14 3.56 6.28 38.15 0.24 3.80 16 8 N -0.66 -14.48 5.34 -303.49 -1.62 -16.10 16 9 C 0.48 14.36 5.73 87.66 0.50 14.87 16 10 O -0.55 -22.33 10.18 -3.07 -0.03 -22.36 16 11 C 0.07 1.79 2.97 44.17 0.13 1.92 16 12 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.14 -3.40 8.53 71.98 0.61 -2.78 16 14 N -0.51 -18.80 4.74 -875.48 -4.15 -22.94 16 15 C 0.06 2.09 4.87 86.32 0.42 2.51 16 16 C -0.11 -4.46 6.09 30.65 0.19 -4.28 16 17 C -0.10 -5.36 5.02 30.67 0.15 -5.21 16 18 C 0.06 3.03 2.26 -11.49 -0.03 3.01 16 19 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 20 C -0.53 -31.85 8.56 25.60 0.22 -31.63 16 21 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 22 C 0.01 0.83 5.30 84.65 0.45 1.28 16 23 N -0.91 -55.33 11.35 21.45 0.24 -55.08 16 24 Si 0.95 46.12 29.54 68.60 2.03 48.15 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 28 C 0.07 3.14 3.82 86.33 0.33 3.47 16 29 C -0.16 -3.00 9.62 22.39 0.22 -2.78 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 36 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.10 3.64 6.40 -2.91 -0.02 3.62 16 38 H 0.43 5.54 8.82 -92.71 -0.82 4.72 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.27 6.19 -2.39 -0.01 1.26 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.02 0.89 6.06 -2.38 -0.01 0.88 16 43 H 0.09 2.67 8.12 -2.39 -0.02 2.65 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.06 3.45 6.15 -2.38 -0.01 3.44 16 48 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.06 2.78 5.81 -2.39 -0.01 2.77 16 50 H 0.03 1.59 5.73 -2.39 -0.01 1.58 16 51 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -76.14 392.04 1.60 -74.54 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.10 Total: 22.27 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 5.02 Total: -28.47 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -5.52 Total: -94.12 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.03 Total: -22.36 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.14 1.60 -74.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.266 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds