Wall clock time and date at job start Tue Mar 31 2020 15:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 119.96354 * 2 1 4 4 C 1.38281 * 120.14169 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.96493 * 180.02562 * 4 3 2 6 6 C 1.38109 * 120.06846 * 359.97438 * 4 3 2 7 7 C 1.38875 * 119.93223 * 0.02562 * 6 4 3 8 8 N 1.39926 * 120.07003 * 179.97438 * 7 6 4 9 9 C 1.34774 * 120.00142 * 324.81232 * 8 7 6 10 10 O 1.21278 * 120.00167 * 5.60881 * 9 8 7 11 11 C 1.50702 * 119.99984 * 185.60325 * 9 8 7 12 12 H 1.09007 * 109.46804 * 33.31250 * 11 9 8 13 13 C 1.53001 * 109.47499 * 273.31443 * 11 9 8 14 14 N 1.46899 * 109.47070 * 153.30543 * 11 9 8 15 15 C 1.46848 * 110.99543 * 73.03253 * 14 11 9 16 16 C 1.53042 * 109.52311 * 174.15787 * 15 14 11 17 17 C 1.53120 * 109.27644 * 59.18047 * 16 15 14 18 18 C 1.53123 * 109.15917 * 302.34568 * 17 16 15 19 19 H 1.09002 * 109.53764 * 297.69326 * 18 17 16 20 20 C 1.50702 * 109.50052 * 177.59636 * 18 17 16 21 21 H 1.08000 * 119.99781 * 240.47226 * 20 18 17 22 22 C 1.37877 * 119.99912 * 60.19682 * 20 18 17 23 23 N 1.31512 * 120.00280 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 119.99705 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46714 * 89.99886 * 24 22 20 26 26 H 1.48499 * 109.47229 * 210.00073 * 24 22 20 27 27 H 1.48500 * 109.47491 * 330.00442 * 24 22 20 28 28 C 1.46841 * 111.00466 * 308.82461 * 14 11 9 29 29 C 1.38116 * 119.96840 * 180.26149 * 2 1 3 30 30 H 1.09009 * 109.47127 * 89.99511 * 1 2 3 31 31 H 1.08999 * 109.47328 * 209.99478 * 1 2 3 32 32 H 1.08998 * 109.47121 * 329.99494 * 1 2 3 33 33 H 1.08000 * 119.92877 * 0.03279 * 3 2 1 34 34 H 1.08996 * 109.47410 * 269.98442 * 5 4 3 35 35 H 1.08994 * 109.46915 * 29.98539 * 5 4 3 36 36 H 1.08998 * 109.46676 * 149.98350 * 5 4 3 37 37 H 1.08005 * 120.03817 * 180.02562 * 6 4 3 38 38 H 0.97005 * 119.99451 * 144.81299 * 8 7 6 39 39 H 1.08992 * 109.47171 * 59.99534 * 13 11 9 40 40 H 1.09001 * 109.46857 * 180.02562 * 13 11 9 41 41 H 1.09005 * 109.46455 * 299.99564 * 13 11 9 42 42 H 1.08993 * 109.46557 * 294.17378 * 15 14 11 43 43 H 1.09004 * 109.46067 * 54.14654 * 15 14 11 44 44 H 1.08998 * 109.50341 * 179.12001 * 16 15 14 45 45 H 1.09001 * 109.50144 * 299.24000 * 16 15 14 46 46 H 1.09003 * 109.52142 * 182.44398 * 17 16 15 47 47 H 1.08999 * 109.52241 * 62.24868 * 17 16 15 48 48 H 0.97001 * 119.99802 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46134 * 65.81731 * 28 14 11 50 50 H 1.09005 * 109.45429 * 305.85172 * 28 14 11 51 51 H 1.08005 * 120.02922 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2761 0.0093 0.0016 7 6 3.5855 -1.1956 0.0016 8 7 4.2875 -2.4061 0.0021 9 6 5.4510 -2.5107 -0.6700 10 8 5.9412 -1.5308 -1.1899 11 6 6.1429 -3.8453 -0.7753 12 1 5.3970 -4.6391 -0.8159 13 6 7.0415 -4.0518 0.4457 14 7 6.9598 -3.8783 -1.9958 15 6 8.1574 -3.0410 -1.8502 16 6 9.0542 -3.2131 -3.0783 17 6 8.2756 -2.8092 -4.3334 18 6 7.0087 -3.6630 -4.4354 19 1 7.2838 -4.7126 -4.5396 20 6 6.2065 -3.2315 -5.6360 21 1 5.2014 -2.8578 -5.5079 22 6 6.7579 -3.3085 -6.8973 23 7 7.9840 -3.7580 -7.0527 24 14 5.7633 -2.7743 -8.3856 25 1 5.9947 -1.3301 -8.6431 26 1 6.1849 -3.5623 -9.5716 27 1 4.3197 -3.0055 -8.1253 28 6 6.1712 -3.4778 -3.1679 29 6 2.1969 -1.1965 -0.0055 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.6559 2.1323 0.0005 34 1 4.5102 2.8257 -1.0263 35 1 3.7369 3.2676 0.5146 36 1 5.2816 2.3833 0.5155 37 1 5.3562 0.0132 0.0024 38 1 3.9366 -3.1699 0.4863 39 1 6.4353 -4.0273 1.3512 40 1 7.5423 -5.0169 0.3692 41 1 7.7874 -3.2580 0.4862 42 1 7.8611 -1.9959 -1.7605 43 1 8.7041 -3.3414 -0.9563 44 1 9.9354 -2.5797 -2.9771 45 1 9.3621 -4.2555 -3.1608 46 1 8.8961 -2.9713 -5.2148 47 1 8.0011 -1.7563 -4.2686 48 1 8.3718 -3.8125 -7.9402 49 1 5.8842 -2.4307 -3.0720 50 1 5.2753 -4.0955 -3.2311 51 1 1.6568 -2.1318 -0.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:35 Heat of formation + Delta-G solvation = -15.731315 kcal Electronic energy + Delta-G solvation = -29294.625646 eV Core-core repulsion = 25579.204808 eV Total energy + Delta-G solvation = -3715.420838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.85695 -39.31761 -37.46714 -34.98254 -34.27754 -33.57259 -32.21804 -30.54726 -30.14937 -28.91765 -27.33772 -26.80279 -25.24001 -24.36120 -22.95892 -21.58550 -21.12860 -20.84094 -19.70556 -18.70356 -17.21820 -16.79916 -16.38255 -16.10635 -15.64898 -15.22362 -14.73252 -14.43396 -14.32953 -14.02525 -13.98482 -13.62004 -13.30987 -13.22406 -13.00770 -12.66760 -12.64652 -12.51924 -12.41390 -12.12342 -11.95943 -11.86078 -11.74054 -11.63215 -11.50116 -11.19676 -11.15138 -10.88614 -10.59992 -10.51507 -10.18003 -9.90812 -9.89211 -9.67275 -9.36759 -8.96582 -8.63042 -8.58861 -8.23194 -8.09938 -7.55318 -5.90959 -3.96273 1.25405 1.35432 2.65952 3.06580 3.35320 3.41427 3.45044 3.72805 4.32142 4.53083 4.68252 4.68729 4.81392 5.06673 5.08222 5.15339 5.20229 5.24798 5.30388 5.39095 5.43292 5.51806 5.52175 5.57639 5.67414 5.73878 5.77999 5.85729 5.86400 6.00833 6.06343 6.09375 6.22127 6.31881 6.36753 6.45379 6.52956 6.56692 6.59851 6.63941 6.84852 6.91302 7.04584 7.07425 7.28371 7.34804 7.46863 7.66406 7.78232 7.84826 8.16068 8.21592 8.25437 8.56125 9.07182 9.67345 11.15119 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.003715 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.293898 B = 7535.739338 C = 8934.679952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.066 4.066 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.157 3.843 8 N -0.679 5.679 9 C 0.486 3.514 10 O -0.504 6.504 11 C 0.066 3.934 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.506 5.506 15 C 0.043 3.957 16 C -0.116 4.116 17 C -0.109 4.109 18 C 0.059 3.941 19 H 0.032 0.968 20 C -0.511 4.511 21 H 0.051 0.949 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.889 3.111 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.053 3.947 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.031 0.969 48 H 0.259 0.741 49 H 0.043 0.957 50 H 0.051 0.949 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 4.796 19.702 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.160 4.160 4 C -0.067 4.067 5 C -0.169 4.169 6 C -0.146 4.146 7 C 0.063 3.937 8 N -0.325 5.325 9 C 0.273 3.727 10 O -0.377 6.377 11 C -0.047 4.047 12 H 0.118 0.882 13 C -0.201 4.201 14 N -0.229 5.229 15 C -0.084 4.084 16 C -0.153 4.153 17 C -0.147 4.147 18 C 0.041 3.959 19 H 0.050 0.950 20 C -0.550 4.550 21 H 0.069 0.931 22 C -0.138 4.138 23 N -0.528 5.528 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.074 4.074 29 C -0.176 4.176 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.243 0.757 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.398 4.911 19.052 21.392 hybrid contribution -1.104 0.673 -0.626 1.437 sum -9.502 5.584 18.427 21.471 Atomic orbital electron populations 1.20769 0.91097 1.02548 1.02432 1.19625 0.95814 0.92529 0.98861 1.20842 0.93475 0.97405 1.04270 1.19797 0.93599 0.95126 0.98137 1.20775 0.99810 0.93724 1.02623 1.21172 1.01129 0.90331 1.02004 1.17777 0.90711 0.86075 0.99159 1.43913 1.23853 1.12600 1.52157 1.22728 0.80216 0.93069 0.76712 1.90679 1.63605 1.39108 1.44305 1.22018 0.96334 0.92216 0.94159 0.88219 1.21895 0.99678 1.03813 0.94756 1.62601 1.06454 1.53131 1.00742 1.22370 0.91148 0.96647 0.98271 1.21660 0.97002 1.00731 0.95957 1.21628 0.98975 0.98057 0.96078 1.18609 0.91688 0.96423 0.89222 0.95018 1.21138 0.99971 1.42662 0.91240 0.93055 1.24910 0.94939 0.95229 0.98686 1.69896 1.13798 1.46678 1.22412 0.86652 0.80491 0.78577 0.82611 1.20782 1.21235 1.20034 1.22537 0.96013 0.98503 0.90308 1.20742 0.92141 0.98249 1.06425 0.91086 0.91633 0.91591 0.86281 0.90906 0.91675 0.91542 0.84415 0.75698 0.92294 0.90259 0.91469 0.92591 0.92247 0.93616 0.92450 0.89289 0.95044 0.93139 0.93838 0.93008 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.07 -0.76 5.88 -104.65 -0.62 -1.37 16 3 C -0.14 -1.63 9.35 -39.55 -0.37 -2.00 16 4 C -0.07 -0.85 5.88 -104.65 -0.62 -1.46 16 5 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 6 C -0.13 -1.85 8.36 -39.39 -0.33 -2.18 16 7 C 0.16 2.15 6.30 -83.69 -0.53 1.62 16 8 N -0.68 -8.43 5.33 -9.86 -0.05 -8.48 16 9 C 0.49 7.49 5.92 -10.99 -0.07 7.43 16 10 O -0.50 -9.71 9.78 5.56 0.05 -9.65 16 11 C 0.07 0.94 3.00 -68.86 -0.21 0.73 16 12 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 13 C -0.14 -1.60 8.48 37.16 0.31 -1.28 16 14 N -0.51 -9.45 4.74 -228.08 -1.08 -10.53 16 15 C 0.04 0.80 4.58 -3.83 -0.02 0.78 16 16 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 17 C -0.11 -2.74 5.03 -26.61 -0.13 -2.87 16 18 C 0.06 1.55 2.26 -91.69 -0.21 1.35 16 19 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.51 -14.66 8.56 -34.44 -0.29 -14.96 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.81 5.31 -17.82 -0.09 1.72 16 23 N -0.89 -26.04 11.36 55.43 0.63 -25.41 16 24 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.05 1.19 4.06 -3.84 -0.02 1.18 16 29 C -0.16 -1.85 9.62 -39.39 -0.38 -2.23 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.14 2.23 6.20 -52.48 -0.33 1.90 16 38 H 0.41 3.55 8.83 -40.82 -0.36 3.19 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 42 H 0.06 1.15 5.86 -51.93 -0.30 0.84 16 43 H 0.06 0.95 5.81 -51.93 -0.30 0.64 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.04 1.07 5.87 -51.93 -0.30 0.76 16 50 H 0.05 1.15 8.12 -51.93 -0.42 0.73 16 51 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -32.59 391.61 -11.10 -43.69 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.53 Total: 4.96 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.00 Total: -17.47 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.51 Total: -44.42 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.05 Total: -9.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.59 -11.10 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.962 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds