Wall clock time and date at job start Tue Mar 31 2020 15:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 119.96354 * 2 1 4 4 C 1.38281 * 120.14169 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.96493 * 180.02562 * 4 3 2 6 6 C 1.38109 * 120.06846 * 359.97438 * 4 3 2 7 7 C 1.38875 * 119.93223 * 0.02562 * 6 4 3 8 8 N 1.39926 * 120.07003 * 179.97438 * 7 6 4 9 9 C 1.34774 * 120.00142 * 324.81232 * 8 7 6 10 10 O 1.21278 * 120.00167 * 5.60881 * 9 8 7 11 11 C 1.50702 * 119.99984 * 185.60325 * 9 8 7 12 12 H 1.09007 * 109.46804 * 33.31250 * 11 9 8 13 13 C 1.53001 * 109.47499 * 273.31443 * 11 9 8 14 14 N 1.46899 * 109.47070 * 153.30543 * 11 9 8 15 15 C 1.46848 * 110.99543 * 73.03253 * 14 11 9 16 16 C 1.53042 * 109.52311 * 174.15787 * 15 14 11 17 17 C 1.53120 * 109.27644 * 59.18047 * 16 15 14 18 18 C 1.53123 * 109.15917 * 302.34568 * 17 16 15 19 19 H 1.09002 * 109.53764 * 297.69326 * 18 17 16 20 20 C 1.50702 * 109.50052 * 177.59636 * 18 17 16 21 21 H 1.08000 * 119.99781 * 240.47226 * 20 18 17 22 22 C 1.37877 * 119.99912 * 60.19682 * 20 18 17 23 23 N 1.31512 * 120.00280 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 119.99705 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46714 * 89.99886 * 24 22 20 26 26 H 1.48499 * 109.47229 * 210.00073 * 24 22 20 27 27 H 1.48500 * 109.47491 * 330.00442 * 24 22 20 28 28 C 1.46841 * 111.00466 * 308.82461 * 14 11 9 29 29 C 1.38116 * 119.96840 * 180.26149 * 2 1 3 30 30 H 1.09009 * 109.47127 * 89.99511 * 1 2 3 31 31 H 1.08999 * 109.47328 * 209.99478 * 1 2 3 32 32 H 1.08998 * 109.47121 * 329.99494 * 1 2 3 33 33 H 1.08000 * 119.92877 * 0.03279 * 3 2 1 34 34 H 1.08996 * 109.47410 * 269.98442 * 5 4 3 35 35 H 1.08994 * 109.46915 * 29.98539 * 5 4 3 36 36 H 1.08998 * 109.46676 * 149.98350 * 5 4 3 37 37 H 1.08005 * 120.03817 * 180.02562 * 6 4 3 38 38 H 0.97005 * 119.99451 * 144.81299 * 8 7 6 39 39 H 1.08992 * 109.47171 * 59.99534 * 13 11 9 40 40 H 1.09001 * 109.46857 * 180.02562 * 13 11 9 41 41 H 1.09005 * 109.46455 * 299.99564 * 13 11 9 42 42 H 1.08993 * 109.46557 * 294.17378 * 15 14 11 43 43 H 1.09004 * 109.46067 * 54.14654 * 15 14 11 44 44 H 1.08998 * 109.50341 * 179.12001 * 16 15 14 45 45 H 1.09001 * 109.50144 * 299.24000 * 16 15 14 46 46 H 1.09003 * 109.52142 * 182.44398 * 17 16 15 47 47 H 1.08999 * 109.52241 * 62.24868 * 17 16 15 48 48 H 0.97001 * 119.99802 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46134 * 65.81731 * 28 14 11 50 50 H 1.09005 * 109.45429 * 305.85172 * 28 14 11 51 51 H 1.08005 * 120.02922 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2761 0.0093 0.0016 7 6 3.5855 -1.1956 0.0016 8 7 4.2875 -2.4061 0.0021 9 6 5.4510 -2.5107 -0.6700 10 8 5.9412 -1.5308 -1.1899 11 6 6.1429 -3.8453 -0.7753 12 1 5.3970 -4.6391 -0.8159 13 6 7.0415 -4.0518 0.4457 14 7 6.9598 -3.8783 -1.9958 15 6 8.1574 -3.0410 -1.8502 16 6 9.0542 -3.2131 -3.0783 17 6 8.2756 -2.8092 -4.3334 18 6 7.0087 -3.6630 -4.4354 19 1 7.2838 -4.7126 -4.5396 20 6 6.2065 -3.2315 -5.6360 21 1 5.2014 -2.8578 -5.5079 22 6 6.7579 -3.3085 -6.8973 23 7 7.9840 -3.7580 -7.0527 24 14 5.7633 -2.7743 -8.3856 25 1 5.9947 -1.3301 -8.6431 26 1 6.1849 -3.5623 -9.5716 27 1 4.3197 -3.0055 -8.1253 28 6 6.1712 -3.4778 -3.1679 29 6 2.1969 -1.1965 -0.0055 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.6559 2.1323 0.0005 34 1 4.5102 2.8257 -1.0263 35 1 3.7369 3.2676 0.5146 36 1 5.2816 2.3833 0.5155 37 1 5.3562 0.0132 0.0024 38 1 3.9366 -3.1699 0.4863 39 1 6.4353 -4.0273 1.3512 40 1 7.5423 -5.0169 0.3692 41 1 7.7874 -3.2580 0.4862 42 1 7.8611 -1.9959 -1.7605 43 1 8.7041 -3.3414 -0.9563 44 1 9.9354 -2.5797 -2.9771 45 1 9.3621 -4.2555 -3.1608 46 1 8.8961 -2.9713 -5.2148 47 1 8.0011 -1.7563 -4.2686 48 1 8.3718 -3.8125 -7.9402 49 1 5.8842 -2.4307 -3.0720 50 1 5.2753 -4.0955 -3.2311 51 1 1.6568 -2.1318 -0.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:33 Heat of formation + Delta-G solvation = -35.620645 kcal Electronic energy + Delta-G solvation = -29295.488112 eV Core-core repulsion = 25579.204808 eV Total energy + Delta-G solvation = -3716.283304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.03728 -40.43037 -38.92536 -36.16708 -35.91853 -34.42316 -34.06418 -31.93123 -31.64404 -30.35093 -28.15267 -27.66974 -27.05020 -25.83388 -24.45328 -23.20728 -22.16492 -22.06026 -20.94474 -20.42076 -18.66266 -18.18503 -17.80756 -17.26158 -16.82725 -16.60731 -16.44279 -15.76478 -15.69293 -15.46074 -14.99757 -14.90546 -14.52905 -14.44336 -14.08811 -14.04943 -13.98125 -13.87721 -13.38288 -13.29560 -13.25819 -13.03992 -12.97135 -12.85712 -12.78559 -12.70111 -12.53390 -12.45862 -12.11110 -12.04267 -11.72646 -11.67440 -11.43636 -11.18165 -11.03728 -10.87940 -10.69989 -10.39069 -9.52657 -9.09611 -9.07646 -8.10933 -6.24836 0.28211 0.40188 1.36560 1.37514 1.47866 1.51416 2.03768 2.39500 2.78262 2.96556 3.15445 3.65052 3.87833 3.89437 3.96120 4.12032 4.18875 4.21434 4.33852 4.37711 4.39785 4.45216 4.49207 4.64901 4.65766 4.69644 4.73164 4.79313 4.85293 4.86053 4.86927 4.91454 4.97916 5.01994 5.06703 5.12657 5.17086 5.24752 5.27037 5.37329 5.39204 5.44216 5.48768 5.59835 5.63499 5.67656 5.90925 6.04914 6.11224 6.13855 6.18894 6.41516 6.43671 6.85936 7.12543 7.42271 8.93870 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.003715 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.293898 B = 7535.739338 C = 8934.679952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.146 4.146 4 C -0.079 4.079 5 C -0.111 4.111 6 C -0.154 4.154 7 C 0.138 3.862 8 N -0.662 5.662 9 C 0.484 3.516 10 O -0.549 6.549 11 C 0.064 3.936 12 H 0.125 0.875 13 C -0.137 4.137 14 N -0.510 5.510 15 C 0.051 3.949 16 C -0.110 4.110 17 C -0.101 4.101 18 C 0.058 3.942 19 H 0.003 0.997 20 C -0.538 4.538 21 H 0.041 0.959 22 C 0.017 3.983 23 N -0.913 5.913 24 Si 0.952 3.048 25 H -0.279 1.279 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.074 3.926 29 C -0.159 4.159 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.426 0.574 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.008 0.992 48 H 0.262 0.738 49 H 0.019 0.981 50 H 0.051 0.949 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 4.493 21.472 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.071 4.071 3 C -0.164 4.164 4 C -0.080 4.080 5 C -0.168 4.168 6 C -0.175 4.175 7 C 0.043 3.957 8 N -0.310 5.310 9 C 0.271 3.729 10 O -0.425 6.425 11 C -0.049 4.049 12 H 0.143 0.857 13 C -0.195 4.195 14 N -0.233 5.233 15 C -0.076 4.076 16 C -0.148 4.148 17 C -0.139 4.139 18 C 0.039 3.961 19 H 0.021 0.979 20 C -0.577 4.577 21 H 0.060 0.940 22 C -0.182 4.182 23 N -0.552 5.552 24 Si 0.777 3.223 25 H -0.205 1.205 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.054 4.054 29 C -0.180 4.180 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.071 0.929 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.401 4.583 20.867 23.761 hybrid contribution -0.542 0.796 -1.134 1.487 sum -10.943 5.378 19.733 23.196 Atomic orbital electron populations 1.20829 0.88620 1.04128 1.03033 1.20083 0.97644 0.92081 0.97273 1.21187 0.93003 0.98804 1.03439 1.20097 0.94593 0.95309 0.98006 1.20802 0.99994 0.93472 1.02515 1.21156 1.00206 0.91902 1.04207 1.17981 0.91632 0.85970 1.00085 1.43671 1.22812 1.13079 1.51395 1.22849 0.80769 0.92871 0.76400 1.90681 1.64963 1.40519 1.46356 1.22246 0.97066 0.92238 0.93330 0.85749 1.21903 0.99360 1.03920 0.94268 1.62501 1.06710 1.52632 1.01414 1.22301 0.91097 0.95792 0.98455 1.21588 0.97560 1.00896 0.94726 1.21427 0.98723 0.96456 0.97321 1.18520 0.92477 0.94466 0.90602 0.97930 1.21462 1.00007 1.43307 0.92898 0.94019 1.25682 0.95990 0.95113 1.01429 1.70023 1.14982 1.47033 1.23139 0.85656 0.79200 0.78216 0.79196 1.20452 1.20122 1.19419 1.22078 0.95627 0.97022 0.90662 1.21038 0.91386 0.99705 1.05826 0.90788 0.90193 0.90004 0.83906 0.91525 0.89206 0.91847 0.86924 0.73504 0.89016 0.89060 0.92516 0.94521 0.88561 0.91691 0.92425 0.92268 0.97330 0.92931 0.96236 0.93041 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.07 -1.43 5.88 -19.88 -0.12 -1.54 16 3 C -0.15 -3.15 9.35 22.29 0.21 -2.94 16 4 C -0.08 -2.04 5.88 -19.88 -0.12 -2.16 16 5 C -0.11 -2.33 10.01 71.24 0.71 -1.61 16 6 C -0.15 -4.68 8.36 22.39 0.19 -4.49 16 7 C 0.14 3.72 6.30 38.15 0.24 3.96 16 8 N -0.66 -15.81 5.33 -303.51 -1.62 -17.43 16 9 C 0.48 14.78 5.92 87.66 0.52 15.30 16 10 O -0.55 -21.98 9.78 -3.02 -0.03 -22.01 16 11 C 0.06 1.71 3.00 44.17 0.13 1.84 16 12 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 13 C -0.14 -2.64 8.48 71.98 0.61 -2.03 16 14 N -0.51 -18.86 4.74 -875.51 -4.15 -23.01 16 15 C 0.05 1.88 4.58 86.33 0.40 2.28 16 16 C -0.11 -4.59 6.09 30.65 0.19 -4.40 16 17 C -0.10 -5.31 5.03 30.68 0.15 -5.15 16 18 C 0.06 3.18 2.26 -11.49 -0.03 3.15 16 19 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 20 C -0.54 -32.06 8.56 25.60 0.22 -31.84 16 21 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 22 C 0.02 0.98 5.31 84.66 0.45 1.43 16 23 N -0.91 -55.01 11.36 21.45 0.24 -54.76 16 24 Si 0.95 45.93 29.54 68.60 2.03 47.96 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.07 3.42 4.06 86.33 0.35 3.77 16 29 C -0.16 -3.54 9.62 22.39 0.22 -3.32 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.11 3.93 6.20 -2.91 -0.02 3.91 16 38 H 0.43 6.49 8.83 -92.70 -0.82 5.68 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.23 6.20 -2.38 -0.01 1.22 16 42 H 0.04 1.54 5.86 -2.39 -0.01 1.52 16 43 H 0.10 2.88 5.81 -2.39 -0.01 2.87 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.06 3.43 6.16 -2.39 -0.01 3.42 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.02 1.00 5.87 -2.39 -0.01 0.99 16 50 H 0.05 2.33 8.12 -2.38 -0.02 2.31 16 51 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.22 391.61 1.60 -73.61 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.10 Total: 24.14 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 5.03 Total: -28.50 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -5.53 Total: -95.21 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.03 Total: -22.01 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.22 1.60 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.994 kcal (2) G-P(sol) polarization free energy of solvation -75.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds