Wall clock time and date at job start Tue Mar 31 2020 15:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38110 * 120.03825 * 2 1 4 4 C 1.38291 * 120.06876 * 180.25109 * 3 2 1 5 5 C 1.38280 * 120.14286 * 359.77036 * 4 3 2 6 6 C 1.38115 * 120.06772 * 359.97334 * 5 4 3 7 7 C 1.50700 * 120.03149 * 180.02562 * 6 5 4 8 8 C 1.38873 * 120.03241 * 179.74335 * 2 1 3 9 9 N 1.39925 * 120.07469 * 0.02562 * 8 2 1 10 10 C 1.34774 * 120.00360 * 123.00975 * 9 8 2 11 11 O 1.21291 * 120.00039 * 5.31023 * 10 9 8 12 12 C 1.50699 * 119.99837 * 185.31727 * 10 9 8 13 13 H 1.08996 * 109.47349 * 327.70906 * 12 10 9 14 14 C 1.53006 * 109.47314 * 87.71056 * 12 10 9 15 15 N 1.46900 * 109.46812 * 207.70785 * 12 10 9 16 16 C 1.46842 * 111.00353 * 289.29328 * 15 12 10 17 17 C 1.53038 * 109.52608 * 185.83999 * 16 15 12 18 18 C 1.53120 * 109.27862 * 300.82319 * 17 16 15 19 19 C 1.53116 * 109.15887 * 57.64987 * 18 17 16 20 20 H 1.08999 * 109.53626 * 62.31569 * 19 18 17 21 21 C 1.50707 * 109.49922 * 182.40518 * 19 18 17 22 22 H 1.08001 * 119.99803 * 120.07906 * 21 19 18 23 23 C 1.37877 * 120.00298 * 299.80272 * 21 19 18 24 24 N 1.31512 * 119.99687 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00163 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47090 * 60.00192 * 25 23 21 27 27 H 1.48496 * 109.47459 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47347 * 300.00760 * 25 23 21 29 29 C 1.46849 * 110.99799 * 53.50641 * 15 12 10 30 30 H 1.08999 * 109.47478 * 273.78709 * 1 2 3 31 31 H 1.09006 * 109.46737 * 33.78895 * 1 2 3 32 32 H 1.09001 * 109.47469 * 153.78716 * 1 2 3 33 33 H 1.08001 * 119.96661 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.92184 * 179.74345 * 4 3 2 35 35 H 1.07992 * 119.96761 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47672 * 277.25617 * 7 6 5 37 37 H 1.08996 * 109.47021 * 37.26104 * 7 6 5 38 38 H 1.09004 * 109.46829 * 157.25801 * 7 6 5 39 39 H 0.97008 * 119.99348 * 303.01311 * 9 8 2 40 40 H 1.08998 * 109.46795 * 60.00145 * 14 12 10 41 41 H 1.09003 * 109.47011 * 180.02562 * 14 12 10 42 42 H 1.09002 * 109.46984 * 299.99730 * 14 12 10 43 43 H 1.09010 * 109.46247 * 305.85619 * 16 15 12 44 44 H 1.09000 * 109.46189 * 65.82180 * 16 15 12 45 45 H 1.09003 * 109.50476 * 60.76133 * 17 16 15 46 46 H 1.08998 * 109.50662 * 180.87948 * 17 16 15 47 47 H 1.09003 * 109.51503 * 297.74866 * 18 17 16 48 48 H 1.09000 * 109.52077 * 177.55890 * 18 17 16 49 49 H 0.97005 * 119.99513 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.46497 * 54.14595 * 29 15 12 51 51 H 1.08997 * 109.45212 * 294.16858 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1964 -0.0052 5 6 4.2762 0.0009 -0.0057 6 6 3.5907 -1.1981 -0.0004 7 6 4.3490 -2.5004 -0.0003 8 6 2.2020 -1.2023 0.0054 9 7 1.5047 -2.4154 0.0103 10 6 1.7204 -3.3207 -0.9645 11 8 2.5867 -3.1271 -1.7911 12 6 0.8851 -4.5734 -1.0276 13 1 0.6085 -4.8769 -0.0180 14 6 -0.3805 -4.3020 -1.8434 15 7 1.6589 -5.6461 -1.6668 16 6 1.8324 -5.3868 -3.1017 17 6 2.5132 -6.5889 -3.7601 18 6 3.8729 -6.8257 -3.0971 19 6 3.6685 -7.0450 -1.5956 20 1 3.0627 -7.9372 -1.4367 21 6 5.0072 -7.2201 -0.9259 22 1 5.3162 -6.5359 -0.1495 23 6 5.8351 -8.2571 -1.3004 24 7 5.4567 -9.0931 -2.2425 25 14 7.4946 -8.4737 -0.4709 26 1 7.2964 -8.6813 0.9861 27 1 8.1873 -9.6529 -1.0496 28 1 8.3199 -7.2586 -0.6899 29 6 2.9543 -5.8296 -0.9999 30 1 -0.3634 0.0679 1.0254 31 1 -0.3633 0.8542 -0.5716 32 1 -0.3634 -0.9220 -0.4539 33 1 1.6584 2.1310 -0.0004 34 1 4.1194 2.1327 -0.0094 35 1 5.3562 0.0048 -0.0102 36 1 4.6402 -2.7515 -1.0202 37 1 5.2410 -2.4014 0.6183 38 1 3.7142 -3.2904 0.4012 39 1 0.8658 -2.6047 0.7154 40 1 -0.1039 -3.9986 -2.8531 41 1 -0.9849 -5.2080 -1.8887 42 1 -0.9547 -3.5060 -1.3692 43 1 0.8577 -5.2244 -3.5619 44 1 2.4507 -4.4995 -3.2382 45 1 1.8888 -7.4738 -3.6359 46 1 2.6559 -6.3898 -4.8222 47 1 4.5112 -5.9562 -3.2547 48 1 4.3424 -7.7073 -3.5335 49 1 6.0390 -9.8229 -2.5057 50 1 2.7945 -5.9889 0.0665 51 1 3.5673 -4.9403 -1.1464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:40 Heat of formation + Delta-G solvation = -10.540869 kcal Electronic energy + Delta-G solvation = -30106.610056 eV Core-core repulsion = 26391.414292 eV Total energy + Delta-G solvation = -3715.195763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.97284 -39.26746 -37.30869 -34.72319 -34.26315 -33.51755 -32.19979 -30.76061 -30.13343 -29.00808 -27.22980 -26.65742 -25.10852 -24.30001 -22.76544 -21.60042 -21.06564 -20.82630 -19.83115 -18.71775 -17.52020 -16.98208 -16.36450 -15.92006 -15.46159 -15.10984 -14.66723 -14.57641 -14.19076 -13.99615 -13.94795 -13.74335 -13.20982 -13.06335 -12.97858 -12.78578 -12.63644 -12.44786 -12.31167 -11.96927 -11.89524 -11.75461 -11.58168 -11.48903 -11.25116 -11.21188 -11.08629 -10.87973 -10.63306 -10.51457 -10.07475 -9.95823 -9.81598 -9.58961 -9.34707 -8.96504 -8.64030 -8.59051 -8.35056 -8.23398 -7.49578 -5.91741 -3.97367 1.21882 1.33018 2.71676 3.15805 3.35421 3.39974 3.42482 3.66772 4.34599 4.53477 4.68216 4.73836 4.86299 4.94762 5.09793 5.13032 5.22436 5.33411 5.38194 5.38694 5.43267 5.51726 5.54922 5.72187 5.77191 5.81023 5.89652 5.98500 6.02152 6.03414 6.12155 6.23329 6.32387 6.38688 6.42431 6.47793 6.52808 6.59248 6.60789 6.65938 6.85638 6.91011 7.03246 7.06211 7.29274 7.37342 7.48155 7.67952 7.78463 7.84610 8.15512 8.24279 8.32906 8.54675 9.05932 9.66235 11.14264 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003909 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.358415 B = 7162.087063 C = 8636.860283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.109 4.109 8 C 0.136 3.864 9 N -0.682 5.682 10 C 0.486 3.514 11 O -0.505 6.505 12 C 0.066 3.934 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.507 5.507 16 C 0.042 3.958 17 C -0.116 4.116 18 C -0.108 4.108 19 C 0.059 3.941 20 H 0.031 0.969 21 C -0.512 4.512 22 H 0.051 0.949 23 C 0.064 3.936 24 N -0.888 5.888 25 Si 0.888 3.112 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 C 0.053 3.947 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.405 0.595 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.030 0.970 48 H 0.088 0.912 49 H 0.259 0.741 50 H 0.051 0.949 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 17.762 4.555 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.063 4.063 7 C -0.165 4.165 8 C 0.043 3.957 9 N -0.332 5.332 10 C 0.273 3.727 11 O -0.377 6.377 12 C -0.047 4.047 13 H 0.115 0.885 14 C -0.199 4.199 15 N -0.230 5.230 16 C -0.086 4.086 17 C -0.154 4.154 18 C -0.146 4.146 19 C 0.041 3.959 20 H 0.049 0.951 21 C -0.551 4.551 22 H 0.069 0.931 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.716 3.284 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.204 1.204 29 C -0.074 4.074 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.106 0.894 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.357 17.207 3.848 20.973 hybrid contribution 1.175 0.602 0.795 1.542 sum -10.182 17.810 4.643 21.034 Atomic orbital electron populations 1.20715 0.91098 1.02960 1.02095 1.19861 0.96054 0.92095 1.01785 1.20794 0.94167 0.96826 1.02298 1.21082 0.94208 0.97877 1.00679 1.20933 0.99926 0.91552 1.01272 1.20047 0.92491 0.96219 0.97551 1.20897 0.98934 0.93256 1.03459 1.17330 0.90366 0.85104 1.02864 1.43808 1.44153 1.16180 1.29014 1.22635 0.84702 0.85051 0.80349 1.90694 1.31844 1.76141 1.39061 1.21971 0.94494 0.87238 1.00996 0.88518 1.21855 0.95345 1.02375 1.00337 1.62567 1.20485 1.36357 1.03619 1.22395 0.99479 0.99227 0.87455 1.21661 0.99216 0.96993 0.97503 1.21617 0.93112 1.01407 0.98515 1.18603 0.94050 0.91640 0.91645 0.95088 1.21085 1.01905 1.12100 1.19970 0.93070 1.24911 0.97954 0.95770 0.95115 1.69888 1.36950 1.16194 1.29692 0.86723 0.84425 0.77471 0.79739 1.20371 1.21336 1.20394 1.22540 0.87131 1.01006 0.96680 0.91267 0.91455 0.91548 0.86081 0.86135 0.85880 0.89369 0.92227 0.91976 0.75925 0.91551 0.90389 0.92403 0.92434 0.92125 0.92542 0.93694 0.95070 0.89354 0.93080 0.93060 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.79 36.00 0.35 -0.57 16 2 C -0.10 -1.07 5.90 -104.44 -0.62 -1.69 16 3 C -0.12 -1.27 9.71 -39.61 -0.38 -1.65 16 4 C -0.12 -1.29 10.04 -39.55 -0.40 -1.69 16 5 C -0.12 -1.49 9.72 -39.61 -0.39 -1.87 16 6 C -0.06 -0.88 5.49 -104.43 -0.57 -1.46 16 7 C -0.11 -1.75 7.90 36.01 0.28 -1.46 16 8 C 0.14 1.80 5.81 -83.69 -0.49 1.31 16 9 N -0.68 -8.25 3.69 -9.86 -0.04 -8.29 16 10 C 0.49 7.26 4.55 -10.99 -0.05 7.21 16 11 O -0.50 -9.44 9.37 5.55 0.05 -9.39 16 12 C 0.07 0.93 2.95 -68.86 -0.20 0.73 16 13 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.14 -1.60 8.57 37.16 0.32 -1.28 16 15 N -0.51 -9.28 4.73 -228.08 -1.08 -10.35 16 16 C 0.04 0.78 4.62 -3.84 -0.02 0.76 16 17 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 18 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 19 C 0.06 1.52 2.26 -91.69 -0.21 1.31 16 20 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 22 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 23 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 24 N -0.89 -25.73 11.36 55.43 0.63 -25.10 16 25 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 29 C 0.05 1.14 4.11 -3.83 -0.02 1.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.07 0.55 7.35 -51.93 -0.38 0.17 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.09 1.64 7.06 -51.93 -0.37 1.28 16 37 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.06 1.05 5.94 -51.93 -0.31 0.74 16 39 H 0.40 3.64 8.80 -40.82 -0.36 3.28 16 40 H 0.07 0.83 6.19 -51.93 -0.32 0.51 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.94 5.82 -51.92 -0.30 0.63 16 44 H 0.06 1.25 5.67 -51.93 -0.29 0.95 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.09 2.42 6.16 -51.93 -0.32 2.09 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 51 H 0.04 0.99 5.29 -51.93 -0.27 0.72 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -31.45 384.43 -11.11 -42.57 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.39 Total: 5.61 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -3.07 Total: -17.44 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.49 Total: -43.74 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.05 Total: -9.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.45 -11.11 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.024 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds