Wall clock time and date at job start Tue Mar 31 2020 15:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38110 * 120.03825 * 2 1 4 4 C 1.38291 * 120.06876 * 180.25109 * 3 2 1 5 5 C 1.38280 * 120.14286 * 359.77036 * 4 3 2 6 6 C 1.38115 * 120.06772 * 359.97334 * 5 4 3 7 7 C 1.50700 * 120.03149 * 180.02562 * 6 5 4 8 8 C 1.38873 * 120.03241 * 179.74335 * 2 1 3 9 9 N 1.39925 * 120.07469 * 0.02562 * 8 2 1 10 10 C 1.34774 * 120.00360 * 123.00975 * 9 8 2 11 11 O 1.21291 * 120.00039 * 5.31023 * 10 9 8 12 12 C 1.50699 * 119.99837 * 185.31727 * 10 9 8 13 13 H 1.08996 * 109.47349 * 327.70906 * 12 10 9 14 14 C 1.53006 * 109.47314 * 87.71056 * 12 10 9 15 15 N 1.46900 * 109.46812 * 207.70785 * 12 10 9 16 16 C 1.46842 * 111.00353 * 289.29328 * 15 12 10 17 17 C 1.53038 * 109.52608 * 185.83999 * 16 15 12 18 18 C 1.53120 * 109.27862 * 300.82319 * 17 16 15 19 19 C 1.53116 * 109.15887 * 57.64987 * 18 17 16 20 20 H 1.08999 * 109.53626 * 62.31569 * 19 18 17 21 21 C 1.50707 * 109.49922 * 182.40518 * 19 18 17 22 22 H 1.08001 * 119.99803 * 120.07906 * 21 19 18 23 23 C 1.37877 * 120.00298 * 299.80272 * 21 19 18 24 24 N 1.31512 * 119.99687 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00163 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47090 * 60.00192 * 25 23 21 27 27 H 1.48496 * 109.47459 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47347 * 300.00760 * 25 23 21 29 29 C 1.46849 * 110.99799 * 53.50641 * 15 12 10 30 30 H 1.08999 * 109.47478 * 273.78709 * 1 2 3 31 31 H 1.09006 * 109.46737 * 33.78895 * 1 2 3 32 32 H 1.09001 * 109.47469 * 153.78716 * 1 2 3 33 33 H 1.08001 * 119.96661 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.92184 * 179.74345 * 4 3 2 35 35 H 1.07992 * 119.96761 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47672 * 277.25617 * 7 6 5 37 37 H 1.08996 * 109.47021 * 37.26104 * 7 6 5 38 38 H 1.09004 * 109.46829 * 157.25801 * 7 6 5 39 39 H 0.97008 * 119.99348 * 303.01311 * 9 8 2 40 40 H 1.08998 * 109.46795 * 60.00145 * 14 12 10 41 41 H 1.09003 * 109.47011 * 180.02562 * 14 12 10 42 42 H 1.09002 * 109.46984 * 299.99730 * 14 12 10 43 43 H 1.09010 * 109.46247 * 305.85619 * 16 15 12 44 44 H 1.09000 * 109.46189 * 65.82180 * 16 15 12 45 45 H 1.09003 * 109.50476 * 60.76133 * 17 16 15 46 46 H 1.08998 * 109.50662 * 180.87948 * 17 16 15 47 47 H 1.09003 * 109.51503 * 297.74866 * 18 17 16 48 48 H 1.09000 * 109.52077 * 177.55890 * 18 17 16 49 49 H 0.97005 * 119.99513 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.46497 * 54.14595 * 29 15 12 51 51 H 1.08997 * 109.45212 * 294.16858 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1964 -0.0052 5 6 4.2762 0.0009 -0.0057 6 6 3.5907 -1.1981 -0.0004 7 6 4.3490 -2.5004 -0.0003 8 6 2.2020 -1.2023 0.0054 9 7 1.5047 -2.4154 0.0103 10 6 1.7204 -3.3207 -0.9645 11 8 2.5867 -3.1271 -1.7911 12 6 0.8851 -4.5734 -1.0276 13 1 0.6085 -4.8769 -0.0180 14 6 -0.3805 -4.3020 -1.8434 15 7 1.6589 -5.6461 -1.6668 16 6 1.8324 -5.3868 -3.1017 17 6 2.5132 -6.5889 -3.7601 18 6 3.8729 -6.8257 -3.0971 19 6 3.6685 -7.0450 -1.5956 20 1 3.0627 -7.9372 -1.4367 21 6 5.0072 -7.2201 -0.9259 22 1 5.3162 -6.5359 -0.1495 23 6 5.8351 -8.2571 -1.3004 24 7 5.4567 -9.0931 -2.2425 25 14 7.4946 -8.4737 -0.4709 26 1 7.2964 -8.6813 0.9861 27 1 8.1873 -9.6529 -1.0496 28 1 8.3199 -7.2586 -0.6899 29 6 2.9543 -5.8296 -0.9999 30 1 -0.3634 0.0679 1.0254 31 1 -0.3633 0.8542 -0.5716 32 1 -0.3634 -0.9220 -0.4539 33 1 1.6584 2.1310 -0.0004 34 1 4.1194 2.1327 -0.0094 35 1 5.3562 0.0048 -0.0102 36 1 4.6402 -2.7515 -1.0202 37 1 5.2410 -2.4014 0.6183 38 1 3.7142 -3.2904 0.4012 39 1 0.8658 -2.6047 0.7154 40 1 -0.1039 -3.9986 -2.8531 41 1 -0.9849 -5.2080 -1.8887 42 1 -0.9547 -3.5060 -1.3692 43 1 0.8577 -5.2244 -3.5619 44 1 2.4507 -4.4995 -3.2382 45 1 1.8888 -7.4738 -3.6359 46 1 2.6559 -6.3898 -4.8222 47 1 4.5112 -5.9562 -3.2547 48 1 4.3424 -7.7073 -3.5335 49 1 6.0390 -9.8229 -2.5057 50 1 2.7945 -5.9889 0.0665 51 1 3.5673 -4.9403 -1.1464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:39 Heat of formation + Delta-G solvation = -29.086359 kcal Electronic energy + Delta-G solvation = -30107.414248 eV Core-core repulsion = 26391.414292 eV Total energy + Delta-G solvation = -3715.999956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.09780 -40.40805 -38.74385 -35.94653 -35.77191 -34.46470 -34.01040 -31.95164 -31.72247 -30.47237 -28.21631 -27.54930 -26.95242 -25.70754 -24.22875 -23.17499 -22.14399 -21.93605 -21.03506 -20.44606 -18.72341 -18.24458 -18.10887 -17.09208 -16.79976 -16.52240 -16.07078 -15.77157 -15.59623 -15.42113 -15.04176 -14.77756 -14.66377 -14.47011 -14.08579 -14.04833 -13.86951 -13.85138 -13.63135 -13.27904 -13.19043 -12.98034 -12.83773 -12.81241 -12.73109 -12.51144 -12.46052 -12.21652 -12.16702 -12.03662 -11.71476 -11.65139 -11.40574 -11.22793 -10.85334 -10.75411 -10.66962 -10.36493 -9.50138 -9.34888 -8.94381 -8.08686 -6.22286 0.31375 0.41131 1.38096 1.40004 1.47419 1.59479 2.15081 2.40975 2.77116 3.01632 3.17995 3.75316 3.84949 3.90599 3.99690 4.08938 4.15725 4.22294 4.34064 4.39460 4.44822 4.48358 4.55343 4.59263 4.67294 4.68357 4.73157 4.81089 4.83668 4.86592 4.90286 4.92552 5.00441 5.04081 5.15392 5.17061 5.19649 5.28680 5.32548 5.41151 5.46669 5.49765 5.51318 5.60900 5.62107 5.67007 5.93980 6.07659 6.12366 6.16778 6.23013 6.44011 6.48590 6.88907 7.25432 7.44738 8.95976 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003909 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.358415 B = 7162.087063 C = 8636.860283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.091 4.091 7 C -0.096 4.096 8 C 0.116 3.884 9 N -0.665 5.665 10 C 0.486 3.514 11 O -0.547 6.547 12 C 0.063 3.937 13 H 0.120 0.880 14 C -0.135 4.135 15 N -0.512 5.512 16 C 0.051 3.949 17 C -0.110 4.110 18 C -0.100 4.100 19 C 0.058 3.942 20 H -0.001 1.001 21 C -0.535 4.535 22 H 0.045 0.955 23 C 0.016 3.984 24 N -0.914 5.914 25 Si 0.951 3.049 26 H -0.269 1.269 27 H -0.281 1.281 28 H -0.276 1.276 29 C 0.072 3.928 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.421 0.579 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.260 0.740 50 H 0.051 0.949 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 20.235 5.621 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.152 4.152 6 C -0.093 4.093 7 C -0.153 4.153 8 C 0.023 3.977 9 N -0.315 5.315 10 C 0.273 3.727 11 O -0.423 6.423 12 C -0.049 4.049 13 H 0.138 0.862 14 C -0.192 4.192 15 N -0.235 5.235 16 C -0.076 4.076 17 C -0.148 4.148 18 C -0.138 4.138 19 C 0.039 3.961 20 H 0.018 0.982 21 C -0.573 4.573 22 H 0.064 0.936 23 C -0.183 4.183 24 N -0.553 5.553 25 Si 0.776 3.224 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.202 1.202 29 C -0.055 4.055 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.667 19.700 4.952 24.483 hybrid contribution 1.862 -0.080 0.490 1.926 sum -11.805 19.621 5.442 23.536 Atomic orbital electron populations 1.20785 0.88693 1.03573 1.03607 1.20236 0.97834 0.91372 1.00389 1.21242 0.94164 0.97868 1.00623 1.21433 0.94830 0.98103 0.99259 1.21112 1.00463 0.91851 1.01807 1.20066 0.93434 0.95744 1.00043 1.20668 0.99184 0.94327 1.01122 1.17535 0.90113 0.86070 1.03955 1.43553 1.43816 1.15570 1.28560 1.22669 0.84113 0.85548 0.80323 1.90698 1.33599 1.77033 1.40981 1.22186 0.94645 0.85673 1.02444 0.86225 1.21855 0.93950 1.04033 0.99358 1.62467 1.18484 1.39053 1.03455 1.22294 1.00515 0.97008 0.87820 1.21588 0.96721 0.98097 0.98402 1.21410 0.95114 0.98823 0.98436 1.18514 0.93172 0.92062 0.92308 0.98248 1.21437 1.03358 1.12288 1.20237 0.93623 1.25684 1.01463 0.95464 0.95693 1.70027 1.38143 1.16518 1.30643 0.85730 0.80050 0.77477 0.79112 1.19375 1.20613 1.20157 1.22110 0.88549 0.98331 0.96520 0.89275 0.90047 0.91647 0.82898 0.83406 0.85488 0.92961 0.91793 0.93441 0.74038 0.92708 0.89395 0.89061 0.89101 0.94039 0.92665 0.91971 0.97224 0.92447 0.93044 0.93064 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.79 71.23 0.70 -0.67 16 2 C -0.10 -1.89 5.90 -19.74 -0.12 -2.00 16 3 C -0.12 -2.10 9.71 22.25 0.22 -1.88 16 4 C -0.12 -2.27 10.04 22.29 0.22 -2.04 16 5 C -0.13 -3.32 9.72 22.25 0.22 -3.10 16 6 C -0.09 -2.67 5.49 -19.74 -0.11 -2.78 16 7 C -0.10 -3.30 7.90 71.24 0.56 -2.74 16 8 C 0.12 2.95 5.81 38.15 0.22 3.17 16 9 N -0.67 -15.25 3.69 -303.50 -1.12 -16.37 16 10 C 0.49 14.28 4.55 87.66 0.40 14.68 16 11 O -0.55 -21.07 9.37 -3.06 -0.03 -21.10 16 12 C 0.06 1.67 2.95 44.17 0.13 1.80 16 13 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.13 -2.61 8.57 71.98 0.62 -1.99 16 15 N -0.51 -18.65 4.73 -875.51 -4.14 -22.79 16 16 C 0.05 1.89 4.62 86.33 0.40 2.29 16 17 C -0.11 -4.62 6.09 30.65 0.19 -4.44 16 18 C -0.10 -5.19 5.03 30.67 0.15 -5.03 16 19 C 0.06 3.13 2.26 -11.49 -0.03 3.10 16 20 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 21 C -0.53 -31.17 8.56 25.60 0.22 -30.95 16 22 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 23 C 0.02 0.91 5.30 84.65 0.45 1.36 16 24 N -0.91 -54.88 11.36 21.45 0.24 -54.64 16 25 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 29 C 0.07 3.24 4.11 86.33 0.36 3.60 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.82 8.11 -2.38 -0.02 0.80 16 32 H 0.06 0.84 7.35 -2.39 -0.02 0.82 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.05 2.14 7.06 -2.39 -0.02 2.12 16 37 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 38 H 0.05 1.69 5.94 -2.38 -0.01 1.68 16 39 H 0.42 6.61 8.80 -92.70 -0.82 5.80 16 40 H 0.05 1.21 6.19 -2.39 -0.01 1.20 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 2.79 5.82 -2.38 -0.01 2.78 16 44 H 0.04 1.74 5.67 -2.39 -0.01 1.73 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 3.32 6.16 -2.39 -0.01 3.30 16 49 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 50 H 0.05 2.24 8.12 -2.39 -0.02 2.22 16 51 H 0.03 1.37 5.29 -2.39 -0.01 1.35 16 Total: -1.00 -73.18 384.43 1.89 -71.29 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.11 Total: 23.77 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.80 Total: -27.63 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -5.02 Total: -93.80 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.03 Total: -21.10 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.18 1.89 -71.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.205 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds