Wall clock time and date at job start Tue Mar 31 2020 15:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 120.03588 * 2 1 4 4 C 1.38285 * 120.06927 * 180.24730 * 3 2 1 5 5 C 1.38286 * 120.14122 * 359.74862 * 4 3 2 6 6 C 1.38116 * 120.06918 * 359.96904 * 5 4 3 7 7 C 1.50695 * 120.03148 * 180.02562 * 6 5 4 8 8 C 1.38873 * 119.92972 * 0.02891 * 6 5 4 9 9 N 1.39922 * 120.06853 * 179.97438 * 8 6 5 10 10 C 1.34773 * 119.99769 * 127.89254 * 9 8 6 11 11 O 1.21288 * 120.00336 * 356.39381 * 10 9 8 12 12 C 1.50703 * 120.00162 * 176.39170 * 10 9 8 13 13 H 1.08993 * 109.46745 * 59.99974 * 12 10 9 14 14 C 1.53003 * 109.46939 * 300.00044 * 12 10 9 15 15 N 1.46896 * 109.47535 * 180.02562 * 12 10 9 16 16 C 1.46855 * 110.99885 * 66.04145 * 15 12 10 17 17 C 1.53037 * 109.52178 * 185.84089 * 16 15 12 18 18 C 1.53117 * 109.27840 * 300.82423 * 17 16 15 19 19 C 1.53112 * 109.16223 * 57.65556 * 18 17 16 20 20 H 1.09000 * 109.50325 * 62.32271 * 19 18 17 21 21 C 1.50703 * 109.50433 * 182.40114 * 19 18 17 22 22 H 1.08005 * 119.99725 * 120.00453 * 21 19 18 23 23 C 1.37874 * 120.00210 * 300.00469 * 21 19 18 24 24 N 1.31515 * 120.00123 * 359.97438 * 23 21 19 25 25 Si 1.86805 * 119.99965 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47291 * 59.99545 * 25 23 21 27 27 H 1.48501 * 109.46909 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46843 * 299.99510 * 25 23 21 29 29 C 1.46838 * 111.00171 * 190.25423 * 15 12 10 30 30 H 1.08997 * 109.47361 * 278.17716 * 1 2 3 31 31 H 1.08997 * 109.46876 * 38.18356 * 1 2 3 32 32 H 1.09002 * 109.47167 * 158.17290 * 1 2 3 33 33 H 1.07994 * 119.96850 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.93085 * 179.71597 * 4 3 2 35 35 H 1.07996 * 119.96503 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47260 * 269.98095 * 7 6 5 37 37 H 1.08997 * 109.47607 * 29.98293 * 7 6 5 38 38 H 1.09004 * 109.47290 * 149.98571 * 7 6 5 39 39 H 0.96998 * 120.00515 * 307.89780 * 9 8 6 40 40 H 1.09003 * 109.47213 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.47045 * 300.00018 * 14 12 10 42 42 H 1.09003 * 109.46683 * 59.99986 * 14 12 10 43 43 H 1.09001 * 109.46613 * 305.86066 * 16 15 12 44 44 H 1.09006 * 109.45939 * 65.82716 * 16 15 12 45 45 H 1.08999 * 109.50612 * 60.76691 * 17 16 15 46 46 H 1.09006 * 109.50105 * 180.88629 * 17 16 15 47 47 H 1.09001 * 109.52427 * 177.56346 * 18 17 16 48 48 H 1.09011 * 109.52425 * 297.75003 * 18 17 16 49 49 H 0.96994 * 120.00064 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.46620 * 294.17433 * 29 15 12 51 51 H 1.09000 * 109.46089 * 54.15142 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0052 5 6 4.2762 0.0010 -0.0051 6 6 3.5908 -1.1980 0.0008 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2023 0.0060 9 7 1.5047 -2.4153 0.0114 10 6 0.5508 -2.6400 0.9367 11 8 0.3419 -1.8186 1.8043 12 6 -0.2563 -3.9120 0.8933 13 1 0.4106 -4.7688 0.9890 14 6 -1.0057 -3.9952 -0.4380 15 7 -1.2225 -3.9169 1.9997 16 6 -2.2269 -2.8596 1.8259 17 6 -3.1258 -2.7998 3.0630 18 6 -3.8120 -4.1550 3.2553 19 6 -2.7445 -5.2449 3.3853 20 1 -2.1351 -5.0539 4.2686 21 6 -3.4119 -6.5898 3.5158 22 1 -3.2195 -7.3613 2.7848 23 6 -4.2680 -6.8354 4.5683 24 7 -4.5018 -5.8962 5.4587 25 14 -5.0946 -8.5027 4.7304 26 1 -4.0584 -9.5589 4.8569 27 1 -5.9593 -8.5112 5.9377 28 1 -5.9230 -8.7637 3.5259 29 6 -1.8566 -5.2339 2.1388 30 1 -0.3634 0.1462 1.0172 31 1 -0.3633 0.8078 -0.6353 32 1 -0.3633 -0.9540 -0.3821 33 1 1.6584 2.1309 -0.0004 34 1 4.1194 2.1327 -0.0098 35 1 5.3562 0.0049 -0.0087 36 1 4.5277 -2.8173 -1.0261 37 1 5.3031 -2.3650 0.5110 38 1 3.7649 -3.2607 0.5198 39 1 1.7077 -3.0945 -0.6506 40 1 -1.5892 -4.9154 -0.4696 41 1 -1.6725 -3.1384 -0.5338 42 1 -0.2890 -3.9915 -1.2592 43 1 -1.7257 -1.9006 1.6944 44 1 -2.8334 -3.0759 0.9464 45 1 -2.5220 -2.5699 3.9409 46 1 -3.8809 -2.0256 2.9270 47 1 -4.4197 -4.1306 4.1598 48 1 -4.4465 -4.3674 2.3947 49 1 -5.1038 -6.0691 6.1993 50 1 -2.4649 -5.4391 1.2579 51 1 -1.0866 -5.9994 2.2347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:44 Heat of formation + Delta-G solvation = -11.228032 kcal Electronic energy + Delta-G solvation = -29429.982905 eV Core-core repulsion = 25714.757344 eV Total energy + Delta-G solvation = -3715.225561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97066 -39.21269 -37.65493 -34.81083 -34.26336 -33.64034 -32.25547 -30.85144 -29.90879 -28.98046 -27.20451 -26.77658 -25.02131 -24.90752 -22.74819 -21.57646 -21.27272 -21.08815 -19.84251 -18.33739 -17.73986 -16.80694 -16.37381 -16.15013 -15.51208 -14.98395 -14.78823 -14.41657 -14.29359 -14.04281 -13.88635 -13.83044 -13.58881 -13.21642 -13.09659 -12.87396 -12.81100 -12.53259 -12.36246 -12.07999 -11.99767 -11.76655 -11.70886 -11.64648 -11.39103 -11.29601 -11.16791 -10.89978 -10.68713 -10.60654 -10.12339 -9.86899 -9.76424 -9.66055 -9.38671 -8.94997 -8.68716 -8.66780 -8.33276 -8.25481 -7.61783 -5.94224 -4.01038 1.14566 1.23698 2.72170 3.00292 3.33211 3.38381 3.40092 3.59408 4.37445 4.53773 4.59320 4.66200 4.73811 4.83508 5.08500 5.08883 5.15588 5.23069 5.32889 5.35502 5.36778 5.40421 5.55344 5.62059 5.65140 5.68499 5.72994 5.85665 5.89965 5.91978 6.05682 6.17758 6.21603 6.25563 6.29408 6.37278 6.41952 6.43776 6.50094 6.56534 6.79805 6.85241 6.94314 6.99889 7.27832 7.30190 7.46066 7.69161 7.76829 7.82573 8.12398 8.21820 8.30057 8.50422 9.02927 9.62990 11.11561 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.002694 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.946470 B =10392.021843 C =10853.210500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.114 4.114 8 C 0.146 3.854 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.491 6.491 12 C 0.066 3.934 13 H 0.104 0.896 14 C -0.184 4.184 15 N -0.514 5.514 16 C 0.058 3.942 17 C -0.115 4.115 18 C -0.110 4.110 19 C 0.057 3.943 20 H 0.035 0.965 21 C -0.516 4.516 22 H 0.052 0.948 23 C 0.063 3.937 24 N -0.887 5.887 25 Si 0.890 3.110 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 C 0.068 3.932 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.405 0.595 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.023 0.977 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.155 10.855 -15.514 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.073 4.073 3 C -0.133 4.133 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.171 4.171 8 C 0.052 3.948 9 N -0.332 5.332 10 C 0.305 3.695 11 O -0.362 6.362 12 C -0.047 4.047 13 H 0.122 0.878 14 C -0.243 4.243 15 N -0.237 5.237 16 C -0.070 4.070 17 C -0.153 4.153 18 C -0.148 4.148 19 C 0.038 3.962 20 H 0.053 0.947 21 C -0.555 4.555 22 H 0.071 0.929 23 C -0.138 4.138 24 N -0.526 5.526 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.204 1.204 29 C -0.058 4.058 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.241 0.759 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.041 0.959 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.071 11.531 -14.226 23.717 hybrid contribution -0.748 -1.417 -0.979 1.878 sum 14.323 10.114 -15.205 23.209 Atomic orbital electron populations 1.20892 0.90814 1.01766 1.03128 1.19881 0.96452 0.91926 0.99022 1.20877 0.94156 0.97138 1.01171 1.21074 0.94183 0.97928 1.00958 1.20828 0.99541 0.91516 1.01636 1.19854 0.92124 0.96084 1.01934 1.20734 0.99949 0.94270 1.02120 1.17277 0.89787 0.85522 1.02173 1.43577 1.38779 1.16896 1.33991 1.20874 0.79459 0.88758 0.80403 1.90706 1.65391 1.46143 1.33950 1.21611 0.95959 0.95231 0.91919 0.87817 1.22447 1.01483 1.03777 0.96592 1.61933 1.17031 1.06324 1.38448 1.22205 0.92617 0.94805 0.97361 1.21637 0.97271 0.99206 0.97157 1.21657 0.99231 0.92160 1.01791 1.18644 0.91863 0.93993 0.91728 0.94729 1.21094 1.26612 0.97979 1.09772 0.92937 1.24932 0.96599 0.96582 0.95691 1.69886 1.36604 1.32517 1.13546 0.86700 0.79449 0.84694 0.77355 1.20337 1.21337 1.20420 1.22374 0.96662 0.86827 0.99973 0.89541 0.92242 0.92308 0.85921 0.86081 0.85963 0.91247 0.91293 0.91382 0.75860 0.90724 0.91679 0.92316 0.90751 0.96112 0.92021 0.93731 0.89178 0.95293 0.92995 0.95897 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.22 36.00 0.30 -1.05 16 2 C -0.07 -0.87 5.48 -104.43 -0.57 -1.44 16 3 C -0.11 -1.23 9.73 -39.61 -0.39 -1.61 16 4 C -0.12 -1.16 10.04 -39.55 -0.40 -1.56 16 5 C -0.12 -1.11 9.70 -39.61 -0.38 -1.49 16 6 C -0.10 -1.02 5.90 -104.43 -0.62 -1.64 16 7 C -0.11 -0.91 9.67 36.00 0.35 -0.56 16 8 C 0.15 1.74 5.84 -83.69 -0.49 1.25 16 9 N -0.68 -7.56 3.78 -9.86 -0.04 -7.59 16 10 C 0.52 7.39 4.98 -10.99 -0.05 7.34 16 11 O -0.49 -8.84 11.42 5.55 0.06 -8.78 16 12 C 0.07 0.93 2.73 -68.86 -0.19 0.74 16 13 H 0.10 1.34 7.98 -51.93 -0.41 0.92 16 14 C -0.18 -2.17 8.34 37.16 0.31 -1.86 16 15 N -0.51 -9.55 4.34 -228.08 -0.99 -10.54 16 16 C 0.06 1.07 4.35 -3.83 -0.02 1.05 16 17 C -0.11 -2.39 6.09 -26.65 -0.16 -2.55 16 18 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 19 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 20 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 22 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 23 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 24 N -0.89 -25.55 11.35 55.43 0.63 -24.92 16 25 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.07 1.41 4.36 -3.84 -0.02 1.39 16 30 H 0.09 1.25 7.09 -51.93 -0.37 0.88 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.06 0.74 6.16 -51.93 -0.32 0.42 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 39 H 0.41 3.26 8.21 -40.82 -0.33 2.93 16 40 H 0.07 0.94 6.82 -51.93 -0.35 0.58 16 41 H 0.06 0.82 6.45 -51.93 -0.34 0.48 16 42 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 43 H 0.07 1.36 5.80 -51.93 -0.30 1.06 16 44 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 48 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 49 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.02 0.47 6.88 -51.93 -0.36 0.11 16 51 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -31.37 386.72 -11.00 -42.37 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.41 Total: 3.68 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.06 Total: -16.27 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.40 Total: -43.05 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.37 -11.00 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.137 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds