Wall clock time and date at job start Tue Mar 31 2020 15:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 120.03588 * 2 1 4 4 C 1.38285 * 120.06927 * 180.24730 * 3 2 1 5 5 C 1.38286 * 120.14122 * 359.74862 * 4 3 2 6 6 C 1.38116 * 120.06918 * 359.96904 * 5 4 3 7 7 C 1.50695 * 120.03148 * 180.02562 * 6 5 4 8 8 C 1.38873 * 119.92972 * 0.02891 * 6 5 4 9 9 N 1.39922 * 120.06853 * 179.97438 * 8 6 5 10 10 C 1.34773 * 119.99769 * 127.89254 * 9 8 6 11 11 O 1.21288 * 120.00336 * 356.39381 * 10 9 8 12 12 C 1.50703 * 120.00162 * 176.39170 * 10 9 8 13 13 H 1.08993 * 109.46745 * 59.99974 * 12 10 9 14 14 C 1.53003 * 109.46939 * 300.00044 * 12 10 9 15 15 N 1.46896 * 109.47535 * 180.02562 * 12 10 9 16 16 C 1.46855 * 110.99885 * 66.04145 * 15 12 10 17 17 C 1.53037 * 109.52178 * 185.84089 * 16 15 12 18 18 C 1.53117 * 109.27840 * 300.82423 * 17 16 15 19 19 C 1.53112 * 109.16223 * 57.65556 * 18 17 16 20 20 H 1.09000 * 109.50325 * 62.32271 * 19 18 17 21 21 C 1.50703 * 109.50433 * 182.40114 * 19 18 17 22 22 H 1.08005 * 119.99725 * 120.00453 * 21 19 18 23 23 C 1.37874 * 120.00210 * 300.00469 * 21 19 18 24 24 N 1.31515 * 120.00123 * 359.97438 * 23 21 19 25 25 Si 1.86805 * 119.99965 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47291 * 59.99545 * 25 23 21 27 27 H 1.48501 * 109.46909 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46843 * 299.99510 * 25 23 21 29 29 C 1.46838 * 111.00171 * 190.25423 * 15 12 10 30 30 H 1.08997 * 109.47361 * 278.17716 * 1 2 3 31 31 H 1.08997 * 109.46876 * 38.18356 * 1 2 3 32 32 H 1.09002 * 109.47167 * 158.17290 * 1 2 3 33 33 H 1.07994 * 119.96850 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.93085 * 179.71597 * 4 3 2 35 35 H 1.07996 * 119.96503 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47260 * 269.98095 * 7 6 5 37 37 H 1.08997 * 109.47607 * 29.98293 * 7 6 5 38 38 H 1.09004 * 109.47290 * 149.98571 * 7 6 5 39 39 H 0.96998 * 120.00515 * 307.89780 * 9 8 6 40 40 H 1.09003 * 109.47213 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.47045 * 300.00018 * 14 12 10 42 42 H 1.09003 * 109.46683 * 59.99986 * 14 12 10 43 43 H 1.09001 * 109.46613 * 305.86066 * 16 15 12 44 44 H 1.09006 * 109.45939 * 65.82716 * 16 15 12 45 45 H 1.08999 * 109.50612 * 60.76691 * 17 16 15 46 46 H 1.09006 * 109.50105 * 180.88629 * 17 16 15 47 47 H 1.09001 * 109.52427 * 177.56346 * 18 17 16 48 48 H 1.09011 * 109.52425 * 297.75003 * 18 17 16 49 49 H 0.96994 * 120.00064 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.46620 * 294.17433 * 29 15 12 51 51 H 1.09000 * 109.46089 * 54.15142 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0052 5 6 4.2762 0.0010 -0.0051 6 6 3.5908 -1.1980 0.0008 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2023 0.0060 9 7 1.5047 -2.4153 0.0114 10 6 0.5508 -2.6400 0.9367 11 8 0.3419 -1.8186 1.8043 12 6 -0.2563 -3.9120 0.8933 13 1 0.4106 -4.7688 0.9890 14 6 -1.0057 -3.9952 -0.4380 15 7 -1.2225 -3.9169 1.9997 16 6 -2.2269 -2.8596 1.8259 17 6 -3.1258 -2.7998 3.0630 18 6 -3.8120 -4.1550 3.2553 19 6 -2.7445 -5.2449 3.3853 20 1 -2.1351 -5.0539 4.2686 21 6 -3.4119 -6.5898 3.5158 22 1 -3.2195 -7.3613 2.7848 23 6 -4.2680 -6.8354 4.5683 24 7 -4.5018 -5.8962 5.4587 25 14 -5.0946 -8.5027 4.7304 26 1 -4.0584 -9.5589 4.8569 27 1 -5.9593 -8.5112 5.9377 28 1 -5.9230 -8.7637 3.5259 29 6 -1.8566 -5.2339 2.1388 30 1 -0.3634 0.1462 1.0172 31 1 -0.3633 0.8078 -0.6353 32 1 -0.3633 -0.9540 -0.3821 33 1 1.6584 2.1309 -0.0004 34 1 4.1194 2.1327 -0.0098 35 1 5.3562 0.0049 -0.0087 36 1 4.5277 -2.8173 -1.0261 37 1 5.3031 -2.3650 0.5110 38 1 3.7649 -3.2607 0.5198 39 1 1.7077 -3.0945 -0.6506 40 1 -1.5892 -4.9154 -0.4696 41 1 -1.6725 -3.1384 -0.5338 42 1 -0.2890 -3.9915 -1.2592 43 1 -1.7257 -1.9006 1.6944 44 1 -2.8334 -3.0759 0.9464 45 1 -2.5220 -2.5699 3.9409 46 1 -3.8809 -2.0256 2.9270 47 1 -4.4197 -4.1306 4.1598 48 1 -4.4465 -4.3674 2.3947 49 1 -5.1038 -6.0691 6.1993 50 1 -2.4649 -5.4391 1.2579 51 1 -1.0866 -5.9994 2.2347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:43 Heat of formation + Delta-G solvation = -29.076425 kcal Electronic energy + Delta-G solvation = -29430.756870 eV Core-core repulsion = 25714.757344 eV Total energy + Delta-G solvation = -3715.999525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97952 -40.34364 -38.98790 -35.93751 -35.79194 -34.43080 -34.03435 -31.81674 -31.69051 -30.31132 -28.03255 -27.53640 -26.90985 -26.19050 -24.06297 -23.31627 -22.36198 -21.95869 -20.94776 -20.05128 -18.79418 -18.22733 -17.90670 -17.11176 -16.82721 -16.33032 -15.97732 -15.83567 -15.53198 -15.28761 -15.00758 -14.81079 -14.66593 -14.65760 -14.28262 -13.98794 -13.92817 -13.82235 -13.59426 -13.39262 -13.30934 -12.96214 -12.83025 -12.78177 -12.70017 -12.53236 -12.49856 -12.24335 -12.14567 -12.05670 -11.78974 -11.62477 -11.42032 -11.10594 -10.83500 -10.66252 -10.55906 -10.32684 -9.46277 -9.19102 -9.04275 -8.05500 -6.20510 0.34436 0.45021 1.42914 1.44571 1.52001 1.65245 2.02413 2.44738 2.81784 3.10259 3.21414 3.68706 3.87130 3.93566 4.00643 4.08674 4.12741 4.25308 4.31826 4.39270 4.40870 4.47547 4.57177 4.60388 4.63696 4.64632 4.70172 4.75184 4.82111 4.82661 4.87548 4.89579 4.95637 4.99609 5.11848 5.16883 5.18244 5.24399 5.34452 5.39222 5.47801 5.51140 5.53023 5.64321 5.64952 5.67594 5.96751 6.12195 6.14623 6.21973 6.24000 6.46549 6.53735 6.93066 7.27934 7.47667 8.99159 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.002694 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.946470 B =10392.021843 C =10853.210500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.112 4.112 8 C 0.121 3.879 9 N -0.663 5.663 10 C 0.522 3.478 11 O -0.535 6.535 12 C 0.064 3.936 13 H 0.121 0.879 14 C -0.176 4.176 15 N -0.534 5.534 16 C 0.069 3.931 17 C -0.109 4.109 18 C -0.101 4.101 19 C 0.053 3.947 20 H -0.011 1.011 21 C -0.533 4.533 22 H 0.058 0.942 23 C 0.011 3.989 24 N -0.919 5.919 25 Si 0.956 3.044 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.269 1.269 29 C 0.085 3.915 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.421 0.579 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.027 0.973 49 H 0.259 0.741 50 H 0.031 0.969 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.953 10.544 -18.096 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.169 4.169 8 C 0.028 3.972 9 N -0.313 5.313 10 C 0.310 3.690 11 O -0.409 6.409 12 C -0.048 4.048 13 H 0.139 0.861 14 C -0.235 4.235 15 N -0.258 5.258 16 C -0.058 4.058 17 C -0.147 4.147 18 C -0.139 4.139 19 C 0.034 3.966 20 H 0.007 0.993 21 C -0.572 4.572 22 H 0.076 0.924 23 C -0.188 4.188 24 N -0.558 5.558 25 Si 0.782 3.218 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.194 1.194 29 C -0.042 4.042 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.260 0.740 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.049 0.951 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.906 11.207 -16.863 26.377 hybrid contribution -1.197 -1.241 -0.174 1.733 sum 15.709 9.966 -17.037 25.226 Atomic orbital electron populations 1.20766 0.91384 1.02002 1.01691 1.20061 0.96394 0.92935 1.00263 1.21130 0.95046 0.97172 1.01246 1.21434 0.93828 0.99236 0.99563 1.21211 1.00938 0.91133 1.00633 1.20181 0.91668 0.97605 1.01169 1.20779 0.99860 0.92803 1.03451 1.17502 0.90636 0.85427 1.03632 1.43286 1.37539 1.17166 1.33301 1.20819 0.79727 0.88147 0.80321 1.90702 1.66883 1.47441 1.35922 1.21710 0.95346 0.96001 0.91709 0.86127 1.22381 1.01857 1.03112 0.96123 1.61741 1.17358 1.05025 1.41647 1.22046 0.92393 0.95214 0.96146 1.21550 0.97721 0.97779 0.97673 1.21450 0.98702 0.93863 0.99892 1.18570 0.92201 0.93619 0.92184 0.99272 1.21496 1.26697 0.99018 1.09947 0.92400 1.25774 0.97340 1.00213 0.95429 1.70058 1.37212 1.34497 1.14041 0.85646 0.78488 0.80269 0.77440 1.19523 1.21329 1.19412 1.22012 0.96171 0.88268 0.97794 0.92251 0.90681 0.92903 0.84732 0.83534 0.83421 0.89189 0.90296 0.92223 0.74028 0.91152 0.92461 0.88643 0.90238 0.94878 0.94364 0.91870 0.92649 0.95391 0.93184 0.95122 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 8.22 71.24 0.59 -1.92 16 2 C -0.09 -2.26 5.48 -19.74 -0.11 -2.37 16 3 C -0.13 -2.56 9.73 22.25 0.22 -2.34 16 4 C -0.12 -2.03 10.04 22.29 0.22 -1.81 16 5 C -0.12 -1.96 9.70 22.25 0.22 -1.75 16 6 C -0.10 -1.94 5.90 -19.74 -0.12 -2.06 16 7 C -0.11 -1.49 9.67 71.23 0.69 -0.80 16 8 C 0.12 2.73 5.84 38.15 0.22 2.95 16 9 N -0.66 -13.59 3.78 -303.50 -1.15 -14.73 16 10 C 0.52 14.45 4.98 87.66 0.44 14.89 16 11 O -0.53 -19.49 11.42 -3.05 -0.03 -19.52 16 12 C 0.06 1.73 2.73 44.17 0.12 1.85 16 13 H 0.12 2.84 7.98 -2.39 -0.02 2.82 16 14 C -0.18 -3.70 8.34 71.98 0.60 -3.10 16 15 N -0.53 -19.81 4.34 -875.51 -3.80 -23.61 16 16 C 0.07 2.58 4.35 86.32 0.38 2.95 16 17 C -0.11 -4.70 6.09 30.65 0.19 -4.51 16 18 C -0.10 -5.05 5.02 30.67 0.15 -4.89 16 19 C 0.05 2.76 2.26 -11.49 -0.03 2.74 16 20 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 21 C -0.53 -29.59 8.56 25.60 0.22 -29.37 16 22 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 23 C 0.01 0.62 5.30 84.65 0.45 1.06 16 24 N -0.92 -54.82 11.35 21.45 0.24 -54.58 16 25 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 C 0.08 3.50 4.36 86.33 0.38 3.88 16 30 H 0.06 1.78 7.09 -2.39 -0.02 1.76 16 31 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 32 H 0.05 1.31 6.16 -2.39 -0.01 1.29 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 38 H 0.06 0.90 7.45 -2.38 -0.02 0.88 16 39 H 0.42 5.67 8.21 -92.71 -0.76 4.91 16 40 H 0.07 1.58 6.82 -2.39 -0.02 1.57 16 41 H 0.06 1.32 6.45 -2.39 -0.02 1.30 16 42 H 0.09 1.30 7.65 -2.39 -0.02 1.28 16 43 H 0.08 2.93 5.80 -2.39 -0.01 2.91 16 44 H 0.03 1.15 6.57 -2.38 -0.02 1.13 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.06 2.42 8.14 -2.38 -0.02 2.41 16 47 H 0.05 3.14 6.15 -2.39 -0.01 3.13 16 48 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 49 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.03 1.22 6.88 -2.39 -0.02 1.20 16 51 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 Total: -1.00 -71.13 386.72 2.27 -68.86 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.16 Total: 22.20 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.82 Total: -24.60 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -4.70 Total: -92.92 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.03 Total: -19.52 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.13 2.27 -68.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.786 kcal (2) G-P(sol) polarization free energy of solvation -71.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds