Wall clock time and date at job start Tue Mar 31 2020 15:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38117 * 120.03499 * 2 1 4 4 C 1.38284 * 120.06735 * 180.29767 * 3 2 1 5 5 C 1.38278 * 120.14287 * 359.68056 * 4 3 2 6 6 C 1.38115 * 120.07045 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.03781 * 180.02562 * 6 5 4 8 8 C 1.38868 * 119.92951 * 359.97438 * 6 5 4 9 9 N 1.39930 * 120.07211 * 180.02562 * 8 6 5 10 10 C 1.34782 * 119.99702 * 127.90928 * 9 8 6 11 11 O 1.21282 * 119.99826 * 356.38696 * 10 9 8 12 12 C 1.50699 * 119.99665 * 176.39423 * 10 9 8 13 13 H 1.09003 * 109.47347 * 60.00258 * 12 10 9 14 14 C 1.52992 * 109.47034 * 299.99441 * 12 10 9 15 15 N 1.46900 * 109.46849 * 179.97438 * 12 10 9 16 16 C 1.46852 * 110.99873 * 66.04468 * 15 12 10 17 17 C 1.53036 * 109.52012 * 174.16039 * 16 15 12 18 18 C 1.53113 * 109.31478 * 59.16377 * 17 16 15 19 19 C 1.53127 * 109.15760 * 302.40320 * 18 17 16 20 20 H 1.09007 * 109.49849 * 297.63338 * 19 18 17 21 21 C 1.50702 * 109.50594 * 177.55764 * 19 18 17 22 22 H 1.07994 * 119.99350 * 240.15630 * 21 19 18 23 23 C 1.37870 * 120.00026 * 60.15396 * 21 19 18 24 24 N 1.31517 * 120.00367 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99811 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47414 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47239 * 120.00017 * 25 23 21 28 28 H 1.48500 * 109.47155 * 240.00008 * 25 23 21 29 29 C 1.46845 * 111.00207 * 301.83791 * 15 12 10 30 30 H 1.09002 * 109.47020 * 278.19090 * 1 2 3 31 31 H 1.09000 * 109.47408 * 38.18878 * 1 2 3 32 32 H 1.08997 * 109.47149 * 158.19285 * 1 2 3 33 33 H 1.07995 * 119.96439 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.92621 * 179.69843 * 4 3 2 35 35 H 1.07999 * 119.96741 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46999 * 269.98017 * 7 6 5 37 37 H 1.09005 * 109.46772 * 29.96996 * 7 6 5 38 38 H 1.08992 * 109.47449 * 149.97411 * 7 6 5 39 39 H 0.96997 * 120.00434 * 307.91295 * 9 8 6 40 40 H 1.09004 * 109.47228 * 180.02562 * 14 12 10 41 41 H 1.08995 * 109.47417 * 300.00407 * 14 12 10 42 42 H 1.09000 * 109.46969 * 60.00829 * 14 12 10 43 43 H 1.08996 * 109.45848 * 54.14654 * 16 15 12 44 44 H 1.08998 * 109.45311 * 294.17282 * 16 15 12 45 45 H 1.09004 * 109.50035 * 179.11982 * 17 16 15 46 46 H 1.08995 * 109.50820 * 299.19409 * 17 16 15 47 47 H 1.09000 * 109.52600 * 62.26301 * 18 17 16 48 48 H 1.09000 * 109.52717 * 182.45950 * 18 17 16 49 49 H 0.97000 * 120.00235 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.46342 * 305.85408 * 29 15 12 51 51 H 1.09002 * 109.46834 * 65.82219 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0062 5 6 4.2762 0.0011 -0.0058 6 6 3.5908 -1.1980 0.0003 7 6 4.3490 -2.5003 0.0014 8 6 2.2021 -1.2022 0.0066 9 7 1.5047 -2.4153 0.0133 10 6 0.5512 -2.6393 0.9393 11 8 0.3429 -1.8172 1.8063 12 6 -0.2558 -3.9112 0.8973 13 1 0.4111 -4.7681 0.9935 14 6 -1.0059 -3.9955 -0.4335 15 7 -1.2208 -3.9157 2.0049 16 6 -2.2253 -2.8586 1.8319 17 6 -3.2932 -2.9848 2.9208 18 6 -2.6308 -2.8650 4.2960 19 6 -1.5548 -3.9461 4.4314 20 1 -2.0188 -4.9307 4.3724 21 6 -0.8566 -3.7977 5.7587 22 1 0.2067 -3.6120 5.7916 23 6 -1.5754 -3.8989 6.9309 24 7 -2.8703 -4.1255 6.8908 25 14 -0.7101 -3.7142 8.5760 26 1 0.7366 -3.4673 8.3494 27 1 -1.2976 -2.5704 9.3187 28 1 -0.8812 -4.9589 9.3677 29 6 -0.5373 -3.7920 3.2987 30 1 -0.3633 0.1464 1.0172 31 1 -0.3634 0.8077 -0.6353 32 1 -0.3633 -0.9541 -0.3817 33 1 1.6583 2.1310 0.0004 34 1 4.1194 2.1328 -0.0111 35 1 5.3562 0.0050 -0.0102 36 1 4.5277 -2.8175 -1.0261 37 1 5.3031 -2.3648 0.5108 38 1 3.7649 -3.2605 0.5200 39 1 1.7074 -3.0950 -0.6483 40 1 -1.5901 -4.9154 -0.4637 41 1 -1.6728 -3.1388 -0.5296 42 1 -0.2897 -3.9925 -1.2551 43 1 -2.6922 -2.9582 0.8520 44 1 -1.7433 -1.8839 1.9071 45 1 -4.0302 -2.1906 2.8015 46 1 -3.7856 -3.9536 2.8372 47 1 -2.1722 -1.8811 4.3950 48 1 -3.3817 -2.9980 5.0749 49 1 -3.3759 -4.1971 7.7155 50 1 0.2218 -4.5696 3.3843 51 1 -0.0633 -2.8128 3.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:49 Heat of formation + Delta-G solvation = -7.031234 kcal Electronic energy + Delta-G solvation = -30003.027455 eV Core-core repulsion = 26287.983881 eV Total energy + Delta-G solvation = -3715.043574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03647 -39.28767 -37.27769 -34.78780 -34.23196 -33.59591 -32.20984 -30.78566 -30.07209 -29.01068 -27.18812 -26.72468 -25.10304 -24.31610 -22.76750 -21.58660 -21.16431 -20.92830 -19.74244 -18.72726 -17.60507 -16.82094 -16.29079 -16.09863 -15.50621 -15.06862 -14.74923 -14.53697 -14.25568 -14.04563 -13.97658 -13.66636 -13.22346 -13.17035 -13.04170 -12.79002 -12.64282 -12.54667 -12.31382 -11.98137 -11.87451 -11.78137 -11.66120 -11.48454 -11.33378 -11.25403 -11.09284 -10.88043 -10.55004 -10.44543 -10.08830 -10.03725 -9.81315 -9.58967 -9.33742 -8.92483 -8.63095 -8.58920 -8.28199 -8.19529 -7.44259 -5.88407 -3.93156 1.20202 1.29446 2.71301 3.12886 3.35723 3.43335 3.48218 3.65124 4.35444 4.55737 4.65664 4.71542 4.81789 4.88828 5.09093 5.13587 5.19459 5.27602 5.37087 5.40820 5.41795 5.45243 5.50284 5.66729 5.69705 5.76101 5.79180 5.86794 5.96776 6.00538 6.10235 6.19948 6.26074 6.30464 6.35176 6.45915 6.48222 6.54823 6.62375 6.69020 6.86504 6.92902 7.02087 7.16323 7.32188 7.36304 7.50503 7.71371 7.82876 7.88176 8.20409 8.26820 8.34417 8.60535 9.10926 9.70349 11.17760 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003662 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.633093 B = 7645.120870 C = 8497.306920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.143 3.857 9 N -0.682 5.682 10 C 0.480 3.520 11 O -0.496 6.496 12 C 0.064 3.936 13 H 0.104 0.896 14 C -0.144 4.144 15 N -0.506 5.506 16 C 0.047 3.953 17 C -0.115 4.115 18 C -0.108 4.108 19 C 0.058 3.942 20 H 0.029 0.971 21 C -0.508 4.508 22 H 0.052 0.948 23 C 0.062 3.938 24 N -0.890 5.890 25 Si 0.888 3.112 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.047 3.953 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.404 0.596 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.088 0.912 49 H 0.257 0.743 50 H 0.048 0.952 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 5.161 -20.353 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.170 4.170 8 C 0.050 3.950 9 N -0.331 5.331 10 C 0.267 3.733 11 O -0.368 6.368 12 C -0.049 4.049 13 H 0.122 0.878 14 C -0.201 4.201 15 N -0.229 5.229 16 C -0.081 4.081 17 C -0.153 4.153 18 C -0.146 4.146 19 C 0.039 3.961 20 H 0.047 0.953 21 C -0.547 4.547 22 H 0.070 0.930 23 C -0.139 4.139 24 N -0.529 5.529 25 Si 0.716 3.284 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.079 4.079 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.145 5.218 -19.557 22.211 hybrid contribution 1.106 0.596 0.690 1.434 sum 10.251 5.814 -18.867 22.245 Atomic orbital electron populations 1.20878 0.90846 1.01633 1.03106 1.19865 0.96422 0.91919 0.98995 1.20878 0.94166 0.97156 1.01177 1.21066 0.94187 0.97918 1.00999 1.20823 0.99519 0.91549 1.01654 1.19852 0.92175 0.96044 1.01975 1.20726 0.99963 0.94286 1.02018 1.17338 0.89837 0.85799 1.02067 1.43886 1.38711 1.16631 1.33889 1.22763 0.79800 0.90215 0.80530 1.90715 1.65844 1.46614 1.33648 1.21977 0.94169 0.93770 0.94970 0.87815 1.21892 1.00552 1.03839 0.93831 1.62550 1.12399 1.46134 1.01805 1.22281 0.93700 0.93791 0.98300 1.21639 0.96420 1.00272 0.96924 1.21609 1.00367 0.98560 0.94056 1.18620 0.91537 0.95333 0.90565 0.95277 1.21187 0.94458 1.48290 0.90727 0.92965 1.24915 0.94824 0.95297 0.98827 1.69910 1.06088 1.49948 1.26960 0.86605 0.79885 0.77546 0.84362 1.19922 1.21131 1.21115 1.22653 0.97459 1.00637 0.87142 0.89602 0.92344 0.92325 0.85966 0.86107 0.86004 0.91294 0.91314 0.91447 0.75999 0.90359 0.91816 0.92396 0.92594 0.93273 0.93747 0.92467 0.95039 0.89400 0.93262 0.93339 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.22 36.00 0.30 -1.13 16 2 C -0.07 -0.93 5.48 -104.43 -0.57 -1.50 16 3 C -0.12 -1.36 9.73 -39.61 -0.39 -1.74 16 4 C -0.12 -1.30 10.04 -39.55 -0.40 -1.70 16 5 C -0.12 -1.23 9.70 -39.61 -0.38 -1.62 16 6 C -0.10 -1.12 5.90 -104.43 -0.62 -1.74 16 7 C -0.11 -1.01 9.67 36.01 0.35 -0.66 16 8 C 0.14 1.84 5.84 -83.69 -0.49 1.35 16 9 N -0.68 -7.91 3.78 -9.86 -0.04 -7.95 16 10 C 0.48 7.08 4.72 -10.98 -0.05 7.02 16 11 O -0.50 -9.40 8.69 5.56 0.05 -9.35 16 12 C 0.06 0.90 2.87 -68.87 -0.20 0.70 16 13 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 14 C -0.14 -1.50 8.67 37.15 0.32 -1.18 16 15 N -0.51 -9.30 4.70 -228.08 -1.07 -10.37 16 16 C 0.05 0.85 4.72 -3.83 -0.02 0.83 16 17 C -0.11 -2.35 6.09 -26.65 -0.16 -2.51 16 18 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 19 C 0.06 1.52 2.26 -91.69 -0.21 1.32 16 20 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.51 -14.58 8.56 -34.44 -0.29 -14.88 16 22 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 24 N -0.89 -26.14 11.36 55.43 0.63 -25.51 16 25 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 C 0.05 1.06 4.20 -3.83 -0.02 1.04 16 30 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.06 0.77 6.17 -51.93 -0.32 0.45 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.07 0.65 7.45 -51.93 -0.39 0.26 16 39 H 0.40 3.38 8.20 -40.82 -0.33 3.05 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.71 6.20 -51.93 -0.32 0.39 16 42 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 43 H 0.06 0.87 5.87 -51.93 -0.30 0.57 16 44 H 0.05 0.97 6.00 -51.93 -0.31 0.66 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 51 H 0.06 1.51 5.36 -51.93 -0.28 1.23 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -32.45 384.11 -11.09 -43.55 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.38 Total: 4.30 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.05 Total: -17.53 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.48 Total: -43.83 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.05 Total: -9.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.45 -11.09 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.515 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds