Wall clock time and date at job start Tue Mar 31 2020 15:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38117 * 120.03499 * 2 1 4 4 C 1.38284 * 120.06735 * 180.29767 * 3 2 1 5 5 C 1.38278 * 120.14287 * 359.68056 * 4 3 2 6 6 C 1.38115 * 120.07045 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.03781 * 180.02562 * 6 5 4 8 8 C 1.38868 * 119.92951 * 359.97438 * 6 5 4 9 9 N 1.39930 * 120.07211 * 180.02562 * 8 6 5 10 10 C 1.34782 * 119.99702 * 127.90928 * 9 8 6 11 11 O 1.21282 * 119.99826 * 356.38696 * 10 9 8 12 12 C 1.50699 * 119.99665 * 176.39423 * 10 9 8 13 13 H 1.09003 * 109.47347 * 60.00258 * 12 10 9 14 14 C 1.52992 * 109.47034 * 299.99441 * 12 10 9 15 15 N 1.46900 * 109.46849 * 179.97438 * 12 10 9 16 16 C 1.46852 * 110.99873 * 66.04468 * 15 12 10 17 17 C 1.53036 * 109.52012 * 174.16039 * 16 15 12 18 18 C 1.53113 * 109.31478 * 59.16377 * 17 16 15 19 19 C 1.53127 * 109.15760 * 302.40320 * 18 17 16 20 20 H 1.09007 * 109.49849 * 297.63338 * 19 18 17 21 21 C 1.50702 * 109.50594 * 177.55764 * 19 18 17 22 22 H 1.07994 * 119.99350 * 240.15630 * 21 19 18 23 23 C 1.37870 * 120.00026 * 60.15396 * 21 19 18 24 24 N 1.31517 * 120.00367 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99811 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47414 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47239 * 120.00017 * 25 23 21 28 28 H 1.48500 * 109.47155 * 240.00008 * 25 23 21 29 29 C 1.46845 * 111.00207 * 301.83791 * 15 12 10 30 30 H 1.09002 * 109.47020 * 278.19090 * 1 2 3 31 31 H 1.09000 * 109.47408 * 38.18878 * 1 2 3 32 32 H 1.08997 * 109.47149 * 158.19285 * 1 2 3 33 33 H 1.07995 * 119.96439 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.92621 * 179.69843 * 4 3 2 35 35 H 1.07999 * 119.96741 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46999 * 269.98017 * 7 6 5 37 37 H 1.09005 * 109.46772 * 29.96996 * 7 6 5 38 38 H 1.08992 * 109.47449 * 149.97411 * 7 6 5 39 39 H 0.96997 * 120.00434 * 307.91295 * 9 8 6 40 40 H 1.09004 * 109.47228 * 180.02562 * 14 12 10 41 41 H 1.08995 * 109.47417 * 300.00407 * 14 12 10 42 42 H 1.09000 * 109.46969 * 60.00829 * 14 12 10 43 43 H 1.08996 * 109.45848 * 54.14654 * 16 15 12 44 44 H 1.08998 * 109.45311 * 294.17282 * 16 15 12 45 45 H 1.09004 * 109.50035 * 179.11982 * 17 16 15 46 46 H 1.08995 * 109.50820 * 299.19409 * 17 16 15 47 47 H 1.09000 * 109.52600 * 62.26301 * 18 17 16 48 48 H 1.09000 * 109.52717 * 182.45950 * 18 17 16 49 49 H 0.97000 * 120.00235 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.46342 * 305.85408 * 29 15 12 51 51 H 1.09002 * 109.46834 * 65.82219 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0062 5 6 4.2762 0.0011 -0.0058 6 6 3.5908 -1.1980 0.0003 7 6 4.3490 -2.5003 0.0014 8 6 2.2021 -1.2022 0.0066 9 7 1.5047 -2.4153 0.0133 10 6 0.5512 -2.6393 0.9393 11 8 0.3429 -1.8172 1.8063 12 6 -0.2558 -3.9112 0.8973 13 1 0.4111 -4.7681 0.9935 14 6 -1.0059 -3.9955 -0.4335 15 7 -1.2208 -3.9157 2.0049 16 6 -2.2253 -2.8586 1.8319 17 6 -3.2932 -2.9848 2.9208 18 6 -2.6308 -2.8650 4.2960 19 6 -1.5548 -3.9461 4.4314 20 1 -2.0188 -4.9307 4.3724 21 6 -0.8566 -3.7977 5.7587 22 1 0.2067 -3.6120 5.7916 23 6 -1.5754 -3.8989 6.9309 24 7 -2.8703 -4.1255 6.8908 25 14 -0.7101 -3.7142 8.5760 26 1 0.7366 -3.4673 8.3494 27 1 -1.2976 -2.5704 9.3187 28 1 -0.8812 -4.9589 9.3677 29 6 -0.5373 -3.7920 3.2987 30 1 -0.3633 0.1464 1.0172 31 1 -0.3634 0.8077 -0.6353 32 1 -0.3633 -0.9541 -0.3817 33 1 1.6583 2.1310 0.0004 34 1 4.1194 2.1328 -0.0111 35 1 5.3562 0.0050 -0.0102 36 1 4.5277 -2.8175 -1.0261 37 1 5.3031 -2.3648 0.5108 38 1 3.7649 -3.2605 0.5200 39 1 1.7074 -3.0950 -0.6483 40 1 -1.5901 -4.9154 -0.4637 41 1 -1.6728 -3.1388 -0.5296 42 1 -0.2897 -3.9925 -1.2551 43 1 -2.6922 -2.9582 0.8520 44 1 -1.7433 -1.8839 1.9071 45 1 -4.0302 -2.1906 2.8015 46 1 -3.7856 -3.9536 2.8372 47 1 -2.1722 -1.8811 4.3950 48 1 -3.3817 -2.9980 5.0749 49 1 -3.3759 -4.1971 7.7155 50 1 0.2218 -4.5696 3.3843 51 1 -0.0633 -2.8128 3.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:48 Heat of formation + Delta-G solvation = -26.420362 kcal Electronic energy + Delta-G solvation = -30003.868231 eV Core-core repulsion = 26287.983881 eV Total energy + Delta-G solvation = -3715.884350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13629 -40.40509 -38.71062 -35.91048 -35.84174 -34.46535 -34.02804 -31.89306 -31.73885 -30.44994 -28.08306 -27.56961 -26.97811 -25.70244 -24.21371 -23.20210 -22.23270 -21.95775 -20.89934 -20.48613 -18.75316 -18.26031 -17.96753 -17.08252 -16.90265 -16.50788 -16.08234 -15.84828 -15.60648 -15.31705 -15.03389 -14.79926 -14.71280 -14.43117 -14.08730 -14.01622 -13.89261 -13.86913 -13.58972 -13.29669 -13.14060 -12.98239 -12.86795 -12.84018 -12.73311 -12.52048 -12.44170 -12.18301 -12.16441 -11.98372 -11.69597 -11.62887 -11.38057 -11.26929 -10.84701 -10.81510 -10.65732 -10.37020 -9.49464 -9.20679 -8.94040 -8.09101 -6.22421 0.31847 0.41931 1.36476 1.37624 1.49658 1.60844 2.14503 2.40906 2.79042 3.02562 3.17209 3.73806 3.84850 3.91064 4.01884 4.09273 4.15777 4.20905 4.35798 4.38741 4.44254 4.50170 4.56406 4.57862 4.70363 4.71871 4.77392 4.78952 4.83279 4.85413 4.89897 4.92262 5.01962 5.08522 5.15681 5.16304 5.22721 5.28891 5.33221 5.43158 5.47122 5.48703 5.52058 5.61242 5.62377 5.66719 5.96068 6.10654 6.12141 6.19201 6.23499 6.46882 6.50950 6.89277 7.26536 7.44600 8.95837 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003662 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.633093 B = 7645.120870 C = 8497.306920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.106 4.106 7 C -0.111 4.111 8 C 0.119 3.881 9 N -0.662 5.662 10 C 0.482 3.518 11 O -0.543 6.543 12 C 0.062 3.938 13 H 0.120 0.880 14 C -0.136 4.136 15 N -0.511 5.511 16 C 0.056 3.944 17 C -0.109 4.109 18 C -0.098 4.098 19 C 0.057 3.943 20 H -0.002 1.002 21 C -0.534 4.534 22 H 0.041 0.959 23 C 0.015 3.985 24 N -0.914 5.914 25 Si 0.952 3.048 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.274 1.274 29 C 0.067 3.933 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.421 0.579 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.009 0.991 48 H 0.056 0.944 49 H 0.260 0.740 50 H 0.044 0.956 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.474 5.105 -22.555 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.108 4.108 7 C -0.168 4.168 8 C 0.026 3.974 9 N -0.311 5.311 10 C 0.270 3.730 11 O -0.419 6.419 12 C -0.051 4.051 13 H 0.138 0.862 14 C -0.194 4.194 15 N -0.233 5.233 16 C -0.072 4.072 17 C -0.147 4.147 18 C -0.137 4.137 19 C 0.038 3.962 20 H 0.016 0.984 21 C -0.573 4.573 22 H 0.060 0.940 23 C -0.183 4.183 24 N -0.553 5.553 25 Si 0.778 3.222 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.200 1.200 29 C -0.060 4.060 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.028 0.972 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.860 5.143 -21.816 24.906 hybrid contribution 0.650 0.649 1.329 1.616 sum 11.510 5.792 -20.486 24.202 Atomic orbital electron populations 1.20736 0.91321 1.02158 1.01331 1.20058 0.96435 0.92919 1.00202 1.21138 0.95085 0.97229 1.01370 1.21426 0.93834 0.99244 0.99698 1.21211 1.00925 0.91192 1.00702 1.20197 0.91783 0.97585 1.01208 1.20770 0.99748 0.92734 1.03514 1.17564 0.90690 0.85822 1.03363 1.43568 1.37470 1.16814 1.33296 1.22742 0.80129 0.89822 0.80322 1.90718 1.67358 1.48094 1.35726 1.22170 0.94032 0.93930 0.94951 0.86215 1.21900 1.01069 1.03917 0.92469 1.62432 1.13416 1.46153 1.01343 1.22201 0.92927 0.93077 0.98979 1.21564 0.97324 1.00869 0.94945 1.21390 0.99296 0.96832 0.96148 1.18538 0.92472 0.93762 0.91403 0.98431 1.21504 0.94229 1.48946 0.92590 0.94025 1.25683 0.95540 0.94823 1.02287 1.70037 1.07221 1.50134 1.27948 0.85603 0.78735 0.77898 0.79998 1.19709 1.20541 1.19974 1.22190 0.96137 0.99254 0.88430 0.92918 0.90675 0.92477 0.84868 0.83578 0.83457 0.88916 0.90475 0.92376 0.73997 0.89621 0.92313 0.88817 0.88917 0.94776 0.91787 0.92647 0.97220 0.92521 0.93031 0.93774 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 8.22 71.24 0.59 -2.04 16 2 C -0.09 -2.47 5.48 -19.74 -0.11 -2.58 16 3 C -0.13 -2.95 9.73 22.25 0.22 -2.73 16 4 C -0.12 -2.37 10.04 22.29 0.22 -2.15 16 5 C -0.12 -2.28 9.70 22.25 0.22 -2.06 16 6 C -0.11 -2.21 5.90 -19.74 -0.12 -2.33 16 7 C -0.11 -1.70 9.67 71.24 0.69 -1.01 16 8 C 0.12 2.93 5.84 38.15 0.22 3.15 16 9 N -0.66 -14.38 3.78 -303.50 -1.15 -15.53 16 10 C 0.48 13.92 4.72 87.66 0.41 14.33 16 11 O -0.54 -21.15 8.69 -3.04 -0.03 -21.18 16 12 C 0.06 1.62 2.87 44.17 0.13 1.75 16 13 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 14 C -0.14 -2.41 8.67 71.98 0.62 -1.79 16 15 N -0.51 -18.68 4.70 -875.52 -4.11 -22.79 16 16 C 0.06 2.00 4.72 86.32 0.41 2.41 16 17 C -0.11 -4.53 6.09 30.64 0.19 -4.34 16 18 C -0.10 -5.16 5.03 30.67 0.15 -5.01 16 19 C 0.06 3.13 2.26 -11.48 -0.03 3.10 16 20 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 21 C -0.53 -32.00 8.56 25.60 0.22 -31.78 16 22 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 23 C 0.02 0.90 5.30 84.65 0.45 1.35 16 24 N -0.91 -55.41 11.36 21.45 0.24 -55.17 16 25 Si 0.95 46.29 29.54 68.60 2.03 48.32 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 28 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 29 C 0.07 3.12 4.20 86.33 0.36 3.48 16 30 H 0.05 1.75 7.09 -2.39 -0.02 1.74 16 31 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.06 1.47 6.17 -2.39 -0.01 1.45 16 33 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 38 H 0.06 1.00 7.45 -2.39 -0.02 0.98 16 39 H 0.42 5.94 8.20 -92.71 -0.76 5.18 16 40 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.06 1.12 6.20 -2.39 -0.01 1.11 16 42 H 0.09 1.02 7.65 -2.39 -0.02 1.00 16 43 H 0.09 2.69 5.87 -2.39 -0.01 2.67 16 44 H 0.03 1.37 6.00 -2.39 -0.01 1.35 16 45 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 3.29 6.17 -2.39 -0.01 3.28 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.04 2.03 8.12 -2.38 -0.02 2.01 16 51 H 0.04 2.14 5.36 -2.39 -0.01 2.13 16 Total: -1.00 -74.94 384.11 2.00 -72.94 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.16 Total: 21.62 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.85 Total: -28.22 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -5.01 Total: -93.48 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.03 Total: -21.18 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.94 2.00 -72.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.521 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds