Wall clock time and date at job start Tue Mar 31 2020 15:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38299 * 119.96672 * 2 1 4 4 C 1.38257 * 120.14164 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.07553 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.04117 * 179.70087 * 5 4 3 7 7 C 1.38847 * 119.92370 * 359.97438 * 5 4 3 8 8 N 1.39932 * 120.07293 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00275 * 204.77099 * 8 7 5 10 10 O 1.21282 * 119.99772 * 5.81110 * 9 8 7 11 11 C 1.50704 * 119.99537 * 185.80397 * 9 8 7 12 12 H 1.08989 * 109.47161 * 305.05101 * 11 9 8 13 13 C 1.52997 * 109.47022 * 65.05804 * 11 9 8 14 14 N 1.46907 * 109.46551 * 185.05348 * 11 9 8 15 15 C 1.46848 * 110.99624 * 169.04810 * 14 11 9 16 16 C 1.53034 * 109.51957 * 185.83998 * 15 14 11 17 17 C 1.53121 * 109.28025 * 300.81611 * 16 15 14 18 18 C 1.53117 * 109.15775 * 57.65680 * 17 16 15 19 19 H 1.08999 * 109.50340 * 62.32721 * 18 17 16 20 20 C 1.50702 * 109.50210 * 182.40807 * 18 17 16 21 21 H 1.07996 * 120.00195 * 120.00068 * 20 18 17 22 22 C 1.37880 * 119.99792 * 299.99959 * 20 18 17 23 23 N 1.31509 * 120.00118 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 119.99843 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46976 * 89.99875 * 24 22 20 26 26 H 1.48499 * 109.46956 * 209.99808 * 24 22 20 27 27 H 1.48492 * 109.47155 * 329.99853 * 24 22 20 28 28 C 1.46846 * 110.99691 * 293.25375 * 14 11 9 29 29 C 1.38092 * 119.96467 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47458 * 89.99845 * 1 2 3 31 31 H 1.09001 * 109.47146 * 209.99958 * 1 2 3 32 32 H 1.09003 * 109.46925 * 329.99437 * 1 2 3 33 33 H 1.08000 * 119.92607 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.96125 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46877 * 89.99711 * 6 5 4 36 36 H 1.09000 * 109.47501 * 210.00238 * 6 5 4 37 37 H 1.09004 * 109.47330 * 330.00249 * 6 5 4 38 38 H 0.96998 * 119.99210 * 24.77027 * 8 7 5 39 39 H 1.09006 * 109.47526 * 59.99523 * 13 11 9 40 40 H 1.08997 * 109.47339 * 179.97438 * 13 11 9 41 41 H 1.09001 * 109.47146 * 299.99321 * 13 11 9 42 42 H 1.09004 * 109.45714 * 305.85247 * 15 14 11 43 43 H 1.08994 * 109.46525 * 65.82321 * 15 14 11 44 44 H 1.08998 * 109.50449 * 60.75761 * 16 15 14 45 45 H 1.09001 * 109.50285 * 180.83426 * 16 15 14 46 46 H 1.08996 * 109.52474 * 177.56036 * 17 16 15 47 47 H 1.08995 * 109.52112 * 297.75427 * 17 16 15 48 48 H 0.96999 * 120.00343 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.46318 * 294.17414 * 28 14 11 50 50 H 1.09000 * 109.46473 * 54.15052 * 28 14 11 51 51 H 1.08001 * 120.03453 * 359.96926 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2023 -0.0005 5 6 4.2762 0.0091 -0.0016 6 6 5.7831 0.0146 -0.0090 7 6 3.5857 -1.1955 -0.0016 8 7 4.2874 -2.4061 -0.0032 9 6 3.7080 -3.5203 -0.4923 10 8 2.6212 -3.4541 -1.0265 11 6 4.4108 -4.8483 -0.3755 12 1 5.4048 -4.7734 -0.8161 13 6 4.5345 -5.2317 1.1005 14 7 3.6369 -5.8758 -1.0851 15 6 4.4086 -7.1182 -1.2171 16 6 3.6325 -8.1125 -2.0838 17 6 2.2762 -8.3989 -1.4336 18 6 1.5127 -7.0827 -1.2632 19 1 1.3243 -6.6419 -2.2422 20 6 0.2011 -7.3479 -0.5700 21 1 -0.0155 -6.8735 0.3757 22 6 -0.7223 -8.1964 -1.1431 23 7 -0.4588 -8.7738 -2.2949 24 14 -2.3484 -8.5247 -0.2842 25 1 -3.3547 -7.5288 -0.7323 26 1 -2.8198 -9.8915 -0.6227 27 1 -2.1632 -8.4145 1.1850 28 6 2.3501 -6.1181 -0.4203 29 6 2.1967 -1.1963 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6560 2.1324 0.0004 34 1 4.1169 2.1397 -0.0010 35 1 6.1515 0.0180 1.0169 36 1 6.1473 -0.8750 -0.5229 37 1 6.1407 0.9049 -0.5263 38 1 5.1910 -2.4432 0.3477 39 1 3.5403 -5.3067 1.5411 40 1 5.0424 -6.1925 1.1850 41 1 5.1087 -4.4694 1.6270 42 1 5.3690 -6.9011 -1.6848 43 1 4.5746 -7.5493 -0.2300 44 1 3.4781 -7.6876 -3.0756 45 1 4.1988 -9.0399 -2.1694 46 1 1.7025 -9.0731 -2.0694 47 1 2.4301 -8.8596 -0.4578 48 1 -1.1085 -9.3704 -2.6984 49 1 2.5258 -6.5539 0.5632 50 1 1.8154 -5.1748 -0.3091 51 1 1.6567 -2.1316 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:52 Heat of formation + Delta-G solvation = -12.165840 kcal Electronic energy + Delta-G solvation = -29262.238034 eV Core-core repulsion = 25546.971807 eV Total energy + Delta-G solvation = -3715.266227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82168 -39.19352 -37.70589 -35.13901 -34.26381 -33.32101 -32.25703 -30.04525 -29.78304 -29.36656 -28.67109 -25.25507 -24.90374 -24.78832 -23.26271 -21.98342 -21.30917 -20.68645 -19.89621 -18.35157 -17.29385 -16.78684 -16.27788 -15.77718 -15.57469 -15.06275 -14.68951 -14.48329 -14.20927 -14.11975 -13.90358 -13.76115 -13.45306 -13.34369 -12.97894 -12.84918 -12.78655 -12.58355 -12.32543 -12.11162 -12.01089 -11.88063 -11.62633 -11.59951 -11.46812 -11.28090 -11.15168 -10.88369 -10.63073 -10.59116 -10.30595 -10.03037 -9.78152 -9.51961 -9.34991 -8.88555 -8.59117 -8.52903 -8.22586 -7.95929 -7.63675 -5.89491 -3.94597 1.25882 1.41384 2.75942 2.97533 3.36035 3.42210 3.45093 3.77952 4.38144 4.55201 4.62531 4.75949 4.76844 5.03133 5.06758 5.09030 5.12522 5.26623 5.36147 5.40531 5.42674 5.53216 5.54327 5.61068 5.68382 5.71226 5.72632 5.83653 5.84147 5.96672 6.00728 6.12436 6.14853 6.26365 6.31173 6.42873 6.46083 6.49500 6.64478 6.71323 6.73420 6.80835 7.09039 7.12481 7.27021 7.34996 7.47309 7.66360 7.80886 7.85099 8.19888 8.26187 8.30127 8.57409 9.09303 9.68819 11.16752 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.003560 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.454168 B = 7862.296092 C = 9672.515155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.098 4.098 5 C -0.133 4.133 6 C -0.111 4.111 7 C 0.162 3.838 8 N -0.677 5.677 9 C 0.515 3.485 10 O -0.478 6.478 11 C 0.067 3.933 12 H 0.099 0.901 13 C -0.183 4.183 14 N -0.516 5.516 15 C 0.063 3.937 16 C -0.117 4.117 17 C -0.112 4.112 18 C 0.058 3.942 19 H 0.034 0.966 20 C -0.510 4.510 21 H 0.052 0.948 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.888 3.112 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.061 3.939 29 C -0.129 4.129 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.029 0.971 48 H 0.258 0.742 49 H 0.017 0.983 50 H 0.078 0.922 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.899 16.148 6.284 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.162 4.162 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.168 4.168 7 C 0.067 3.933 8 N -0.322 5.322 9 C 0.301 3.699 10 O -0.349 6.349 11 C -0.046 4.046 12 H 0.117 0.883 13 C -0.242 4.242 14 N -0.240 5.240 15 C -0.064 4.064 16 C -0.154 4.154 17 C -0.150 4.150 18 C 0.039 3.961 19 H 0.053 0.947 20 C -0.548 4.548 21 H 0.070 0.930 22 C -0.138 4.138 23 N -0.528 5.528 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.201 1.201 28 C -0.066 4.066 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.036 0.964 50 H 0.096 0.904 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.921 16.113 5.275 21.317 hybrid contribution -0.166 -0.504 1.408 1.504 sum 12.755 15.609 6.683 21.237 Atomic orbital electron populations 1.20795 0.91008 1.02675 1.02640 1.19830 0.96230 0.92561 0.98217 1.20935 0.94063 0.97418 1.03829 1.20726 0.93997 0.96640 1.00302 1.19537 0.95814 0.91839 1.06371 1.20681 0.91286 1.02825 1.01992 1.17611 0.91442 0.84661 0.99570 1.43677 1.18627 1.07298 1.62610 1.20899 0.86604 0.85120 0.77235 1.90718 1.20066 1.85207 1.38872 1.21566 0.97798 0.90845 0.94411 0.88297 1.22418 1.03501 1.02371 0.95940 1.61996 1.04326 1.07480 1.50196 1.22074 0.95820 0.90061 0.98467 1.21668 0.98183 0.96111 0.99479 1.21674 0.92796 1.01639 0.98864 1.18618 0.91708 0.90033 0.95737 0.94740 1.21134 1.00726 1.26661 1.06319 0.93021 1.24917 0.98055 0.95966 0.94897 1.69888 1.35077 1.30846 1.17018 0.86655 0.84417 0.77395 0.79873 1.20721 1.21335 1.20083 1.22531 0.87680 1.01257 0.95087 1.21376 0.92425 0.99568 1.01549 0.90924 0.91222 0.91751 0.86323 0.86073 0.91423 0.91924 0.91276 0.75782 0.91041 0.91110 0.92300 0.92450 0.95488 0.92027 0.93436 0.89101 0.95254 0.93166 0.96435 0.90350 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.00 0.36 -0.94 16 2 C -0.07 -0.89 5.88 -104.65 -0.62 -1.50 16 3 C -0.14 -1.60 9.70 -39.55 -0.38 -1.99 16 4 C -0.10 -1.02 9.70 -39.61 -0.38 -1.40 16 5 C -0.13 -1.46 5.90 -104.44 -0.62 -2.07 16 6 C -0.11 -0.85 9.45 36.00 0.34 -0.51 16 7 C 0.16 2.16 6.41 -83.69 -0.54 1.63 16 8 N -0.68 -8.18 4.94 -9.86 -0.05 -8.22 16 9 C 0.51 8.00 6.68 -10.98 -0.07 7.93 16 10 O -0.48 -9.63 11.35 5.56 0.06 -9.57 16 11 C 0.07 0.95 2.72 -68.86 -0.19 0.76 16 12 H 0.10 1.14 7.97 -51.94 -0.41 0.73 16 13 C -0.18 -2.24 8.39 37.16 0.31 -1.93 16 14 N -0.52 -9.59 4.36 -228.08 -1.00 -10.58 16 15 C 0.06 1.08 5.15 -3.83 -0.02 1.06 16 16 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 17 C -0.11 -2.68 5.02 -26.61 -0.13 -2.82 16 18 C 0.06 1.50 2.26 -91.69 -0.21 1.30 16 19 H 0.03 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.51 -14.45 8.56 -34.44 -0.29 -14.75 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -26.01 11.35 55.43 0.63 -25.38 16 24 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.06 1.34 3.55 -3.83 -0.01 1.32 16 29 C -0.13 -1.95 8.37 -39.39 -0.33 -2.28 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 37 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.41 3.47 7.40 -40.82 -0.30 3.17 16 39 H 0.07 1.04 6.45 -51.93 -0.34 0.70 16 40 H 0.07 0.84 6.85 -51.93 -0.36 0.48 16 41 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 42 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 43 H 0.03 0.44 6.91 -51.93 -0.36 0.08 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 50 H 0.08 1.85 5.69 -51.93 -0.30 1.56 16 51 H 0.15 2.61 5.80 -52.49 -0.30 2.31 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -32.40 390.18 -10.94 -43.35 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.41 Total: 4.67 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -3.04 Total: -16.95 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.42 Total: -44.19 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.40 -10.94 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.179 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds