Wall clock time and date at job start Tue Mar 31 2020 15:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38299 * 119.96672 * 2 1 4 4 C 1.38257 * 120.14164 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.07553 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.04117 * 179.70087 * 5 4 3 7 7 C 1.38847 * 119.92370 * 359.97438 * 5 4 3 8 8 N 1.39932 * 120.07293 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00275 * 204.77099 * 8 7 5 10 10 O 1.21282 * 119.99772 * 5.81110 * 9 8 7 11 11 C 1.50704 * 119.99537 * 185.80397 * 9 8 7 12 12 H 1.08989 * 109.47161 * 305.05101 * 11 9 8 13 13 C 1.52997 * 109.47022 * 65.05804 * 11 9 8 14 14 N 1.46907 * 109.46551 * 185.05348 * 11 9 8 15 15 C 1.46848 * 110.99624 * 169.04810 * 14 11 9 16 16 C 1.53034 * 109.51957 * 185.83998 * 15 14 11 17 17 C 1.53121 * 109.28025 * 300.81611 * 16 15 14 18 18 C 1.53117 * 109.15775 * 57.65680 * 17 16 15 19 19 H 1.08999 * 109.50340 * 62.32721 * 18 17 16 20 20 C 1.50702 * 109.50210 * 182.40807 * 18 17 16 21 21 H 1.07996 * 120.00195 * 120.00068 * 20 18 17 22 22 C 1.37880 * 119.99792 * 299.99959 * 20 18 17 23 23 N 1.31509 * 120.00118 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 119.99843 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46976 * 89.99875 * 24 22 20 26 26 H 1.48499 * 109.46956 * 209.99808 * 24 22 20 27 27 H 1.48492 * 109.47155 * 329.99853 * 24 22 20 28 28 C 1.46846 * 110.99691 * 293.25375 * 14 11 9 29 29 C 1.38092 * 119.96467 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47458 * 89.99845 * 1 2 3 31 31 H 1.09001 * 109.47146 * 209.99958 * 1 2 3 32 32 H 1.09003 * 109.46925 * 329.99437 * 1 2 3 33 33 H 1.08000 * 119.92607 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.96125 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46877 * 89.99711 * 6 5 4 36 36 H 1.09000 * 109.47501 * 210.00238 * 6 5 4 37 37 H 1.09004 * 109.47330 * 330.00249 * 6 5 4 38 38 H 0.96998 * 119.99210 * 24.77027 * 8 7 5 39 39 H 1.09006 * 109.47526 * 59.99523 * 13 11 9 40 40 H 1.08997 * 109.47339 * 179.97438 * 13 11 9 41 41 H 1.09001 * 109.47146 * 299.99321 * 13 11 9 42 42 H 1.09004 * 109.45714 * 305.85247 * 15 14 11 43 43 H 1.08994 * 109.46525 * 65.82321 * 15 14 11 44 44 H 1.08998 * 109.50449 * 60.75761 * 16 15 14 45 45 H 1.09001 * 109.50285 * 180.83426 * 16 15 14 46 46 H 1.08996 * 109.52474 * 177.56036 * 17 16 15 47 47 H 1.08995 * 109.52112 * 297.75427 * 17 16 15 48 48 H 0.96999 * 120.00343 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.46318 * 294.17414 * 28 14 11 50 50 H 1.09000 * 109.46473 * 54.15052 * 28 14 11 51 51 H 1.08001 * 120.03453 * 359.96926 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2023 -0.0005 5 6 4.2762 0.0091 -0.0016 6 6 5.7831 0.0146 -0.0090 7 6 3.5857 -1.1955 -0.0016 8 7 4.2874 -2.4061 -0.0032 9 6 3.7080 -3.5203 -0.4923 10 8 2.6212 -3.4541 -1.0265 11 6 4.4108 -4.8483 -0.3755 12 1 5.4048 -4.7734 -0.8161 13 6 4.5345 -5.2317 1.1005 14 7 3.6369 -5.8758 -1.0851 15 6 4.4086 -7.1182 -1.2171 16 6 3.6325 -8.1125 -2.0838 17 6 2.2762 -8.3989 -1.4336 18 6 1.5127 -7.0827 -1.2632 19 1 1.3243 -6.6419 -2.2422 20 6 0.2011 -7.3479 -0.5700 21 1 -0.0155 -6.8735 0.3757 22 6 -0.7223 -8.1964 -1.1431 23 7 -0.4588 -8.7738 -2.2949 24 14 -2.3484 -8.5247 -0.2842 25 1 -3.3547 -7.5288 -0.7323 26 1 -2.8198 -9.8915 -0.6227 27 1 -2.1632 -8.4145 1.1850 28 6 2.3501 -6.1181 -0.4203 29 6 2.1967 -1.1963 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6560 2.1324 0.0004 34 1 4.1169 2.1397 -0.0010 35 1 6.1515 0.0180 1.0169 36 1 6.1473 -0.8750 -0.5229 37 1 6.1407 0.9049 -0.5263 38 1 5.1910 -2.4432 0.3477 39 1 3.5403 -5.3067 1.5411 40 1 5.0424 -6.1925 1.1850 41 1 5.1087 -4.4694 1.6270 42 1 5.3690 -6.9011 -1.6848 43 1 4.5746 -7.5493 -0.2300 44 1 3.4781 -7.6876 -3.0756 45 1 4.1988 -9.0399 -2.1694 46 1 1.7025 -9.0731 -2.0694 47 1 2.4301 -8.8596 -0.4578 48 1 -1.1085 -9.3704 -2.6984 49 1 2.5258 -6.5539 0.5632 50 1 1.8154 -5.1748 -0.3091 51 1 1.6567 -2.1316 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595612415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:51 Heat of formation + Delta-G solvation = -32.231736 kcal Electronic energy + Delta-G solvation = -29263.108157 eV Core-core repulsion = 25546.971807 eV Total energy + Delta-G solvation = -3716.136350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93981 -40.36936 -39.08545 -36.20938 -35.99220 -34.28567 -34.01405 -31.66916 -31.20853 -30.17914 -29.85097 -26.96801 -26.36968 -25.70558 -24.49902 -23.39003 -22.93581 -21.67746 -21.11847 -20.04737 -18.63083 -18.09236 -17.92094 -16.92449 -16.75714 -16.45704 -16.16085 -15.75171 -15.57306 -15.46430 -15.02362 -14.84337 -14.74632 -14.54683 -14.31934 -14.12121 -13.94410 -13.79796 -13.51870 -13.42186 -13.26313 -13.05678 -12.84893 -12.79725 -12.73814 -12.64885 -12.52437 -12.42258 -12.18075 -12.04178 -11.80048 -11.63269 -11.43556 -11.30334 -10.94843 -10.77413 -10.40559 -10.35273 -9.49502 -9.08720 -8.90463 -8.09497 -6.23663 0.32025 0.46121 1.36472 1.38041 1.48034 1.63410 1.93940 2.40445 2.84949 3.10087 3.16654 3.59470 3.92819 3.95562 3.98548 4.06225 4.16716 4.26294 4.31820 4.32369 4.39636 4.41190 4.56693 4.61218 4.65942 4.68073 4.73480 4.78119 4.84640 4.86089 4.87648 4.90379 4.95062 5.03074 5.10564 5.13905 5.19978 5.26506 5.30200 5.39948 5.41032 5.49383 5.51771 5.59955 5.61510 5.75205 5.94685 6.15103 6.16550 6.21296 6.26195 6.45773 6.52997 6.88866 7.20079 7.43521 8.95299 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.003560 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.454168 B = 7862.296092 C = 9672.515155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.111 4.111 7 C 0.140 3.860 8 N -0.656 5.656 9 C 0.510 3.490 10 O -0.537 6.537 11 C 0.068 3.932 12 H 0.142 0.858 13 C -0.176 4.176 14 N -0.537 5.537 15 C 0.067 3.933 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.056 3.944 19 H -0.018 1.018 20 C -0.536 4.536 21 H 0.044 0.956 22 C 0.014 3.986 23 N -0.915 5.915 24 Si 0.953 3.047 25 H -0.279 1.279 26 H -0.277 1.277 27 H -0.268 1.268 28 C 0.085 3.915 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.426 0.574 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.026 0.974 48 H 0.260 0.740 49 H 0.019 0.981 50 H 0.052 0.948 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.288 17.972 7.712 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.160 4.160 4 C -0.116 4.116 5 C -0.130 4.130 6 C -0.167 4.167 7 C 0.045 3.955 8 N -0.303 5.303 9 C 0.298 3.702 10 O -0.411 6.411 11 C -0.044 4.044 12 H 0.159 0.841 13 C -0.234 4.234 14 N -0.261 5.261 15 C -0.060 4.060 16 C -0.149 4.149 17 C -0.142 4.142 18 C 0.037 3.963 19 H 0.000 1.000 20 C -0.575 4.575 21 H 0.062 0.938 22 C -0.185 4.185 23 N -0.554 5.554 24 Si 0.779 3.221 25 H -0.205 1.205 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.042 4.042 29 C -0.182 4.182 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.265 0.735 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.037 0.963 50 H 0.070 0.930 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.369 17.959 6.731 25.214 hybrid contribution -1.209 -0.959 0.935 1.804 sum 15.159 17.000 7.666 24.033 Atomic orbital electron populations 1.20800 0.90649 1.03060 1.02479 1.20041 0.96891 0.92875 0.99056 1.21271 0.94889 0.97388 1.02483 1.21209 0.93823 0.97889 0.98646 1.19962 0.97858 0.90817 1.04319 1.20784 0.88398 1.03923 1.03597 1.17794 0.90979 0.85917 1.00827 1.43406 1.19120 1.06227 1.61518 1.21289 0.85941 0.86409 0.76551 1.90724 1.22589 1.86046 1.41780 1.21745 0.98391 0.88492 0.95748 0.84058 1.22363 1.02440 1.04325 0.94303 1.61781 1.03859 1.09312 1.51180 1.22111 0.96423 0.88574 0.98894 1.21593 0.96232 0.98469 0.98646 1.21450 0.94937 0.99459 0.98308 1.18524 0.92383 0.91900 0.93459 0.99981 1.21496 1.02558 1.27011 1.06424 0.93791 1.25722 1.01542 0.95627 0.95586 1.70039 1.36158 1.31095 1.18142 0.85632 0.79898 0.77514 0.79081 1.20476 1.20243 1.19221 1.21984 0.89288 0.98594 0.94347 1.21254 0.93815 0.98832 1.04295 0.91365 0.93001 0.89136 0.83727 0.82563 0.89391 0.91456 0.89623 0.73473 0.94207 0.89804 0.88554 0.88240 0.94079 0.93787 0.90485 0.92608 0.95484 0.93046 0.96320 0.92997 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 10.01 71.23 0.71 -2.03 16 2 C -0.09 -2.38 5.88 -19.89 -0.12 -2.50 16 3 C -0.14 -2.93 9.70 22.29 0.22 -2.71 16 4 C -0.10 -1.73 9.70 22.25 0.22 -1.51 16 5 C -0.13 -2.47 5.90 -19.74 -0.12 -2.59 16 6 C -0.11 -1.23 9.45 71.23 0.67 -0.55 16 7 C 0.14 3.70 6.41 38.15 0.24 3.94 16 8 N -0.66 -15.21 4.94 -303.50 -1.50 -16.71 16 9 C 0.51 16.09 6.68 87.66 0.59 16.68 16 10 O -0.54 -23.38 11.35 -3.03 -0.03 -23.41 16 11 C 0.07 1.82 2.72 44.17 0.12 1.94 16 12 H 0.14 2.62 7.97 -2.39 -0.02 2.60 16 13 C -0.18 -3.89 8.39 71.98 0.60 -3.28 16 14 N -0.54 -19.92 4.36 -875.50 -3.82 -23.74 16 15 C 0.07 2.12 5.15 86.32 0.44 2.56 16 16 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 17 C -0.10 -5.17 5.02 30.67 0.15 -5.02 16 18 C 0.06 3.13 2.26 -11.49 -0.03 3.10 16 19 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 20 C -0.54 -32.29 8.56 25.60 0.22 -32.07 16 21 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 22 C 0.01 0.82 5.30 84.66 0.45 1.27 16 23 N -0.91 -56.09 11.35 21.45 0.24 -55.85 16 24 Si 0.95 46.34 29.54 68.60 2.03 48.36 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 28 C 0.09 3.97 3.55 86.33 0.31 4.27 16 29 C -0.16 -5.24 8.37 22.39 0.19 -5.05 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 32 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 33 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.70 6.98 -2.39 -0.02 0.68 16 37 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 38 H 0.43 6.01 7.40 -92.71 -0.69 5.32 16 39 H 0.04 1.14 6.45 -2.38 -0.02 1.13 16 40 H 0.08 1.67 6.85 -2.39 -0.02 1.66 16 41 H 0.10 1.40 8.13 -2.39 -0.02 1.38 16 42 H 0.10 2.39 8.00 -2.38 -0.02 2.37 16 43 H 0.04 1.21 6.91 -2.39 -0.02 1.19 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 47 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 49 H 0.02 0.85 6.57 -2.39 -0.02 0.83 16 50 H 0.05 2.68 5.69 -2.39 -0.01 2.67 16 51 H 0.11 4.34 5.80 -2.91 -0.02 4.32 16 Total: -1.00 -79.59 390.18 2.21 -77.38 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.24 Total: 21.69 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 5.06 Total: -27.71 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -5.08 Total: -96.30 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.03 Total: -23.41 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.59 2.21 -77.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.146 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds