Wall clock time and date at job start Tue Mar 31 2020 15:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.96285 * 2 1 4 4 C 1.38258 * 120.13910 * 180.02562 * 3 2 1 5 5 C 1.38128 * 120.07423 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.03759 * 179.97438 * 5 4 3 7 7 C 1.38855 * 119.92745 * 359.97438 * 5 4 3 8 8 N 1.39930 * 120.07269 * 180.02562 * 7 5 4 9 9 C 1.34770 * 120.00078 * 146.24070 * 8 7 5 10 10 O 1.21290 * 119.99966 * 5.01764 * 9 8 7 11 11 C 1.50700 * 119.99921 * 185.01807 * 9 8 7 12 12 H 1.08995 * 109.47170 * 309.22836 * 11 9 8 13 13 C 1.52998 * 109.47061 * 69.23274 * 11 9 8 14 14 N 1.46905 * 109.47156 * 189.22831 * 11 9 8 15 15 C 1.46849 * 110.99829 * 60.28459 * 14 11 9 16 16 C 1.53036 * 109.52281 * 174.15994 * 15 14 11 17 17 C 1.53119 * 109.27779 * 59.18093 * 16 15 14 18 18 C 1.53119 * 109.15970 * 302.34349 * 17 16 15 19 19 H 1.09006 * 109.50135 * 297.67998 * 18 17 16 20 20 C 1.50695 * 109.50436 * 177.60051 * 18 17 16 21 21 H 1.08004 * 119.99749 * 240.00129 * 20 18 17 22 22 C 1.37871 * 120.00148 * 59.99734 * 20 18 17 23 23 N 1.31514 * 120.00254 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99974 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47382 * 119.99878 * 24 22 20 27 27 H 1.48511 * 109.46886 * 239.99914 * 24 22 20 28 28 C 1.46842 * 111.00341 * 296.07432 * 14 11 9 29 29 C 1.38089 * 119.96701 * 180.29492 * 2 1 3 30 30 H 1.09006 * 109.46927 * 90.00766 * 1 2 3 31 31 H 1.08998 * 109.47253 * 209.99896 * 1 2 3 32 32 H 1.08999 * 109.47350 * 330.00497 * 1 2 3 33 33 H 1.07999 * 119.92538 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.96298 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47486 * 269.98046 * 6 5 4 36 36 H 1.08999 * 109.47052 * 29.98654 * 6 5 4 37 37 H 1.08999 * 109.46916 * 149.97858 * 6 5 4 38 38 H 0.96994 * 119.99674 * 326.24338 * 8 7 5 39 39 H 1.08995 * 109.47486 * 59.99756 * 13 11 9 40 40 H 1.09004 * 109.47035 * 180.02562 * 13 11 9 41 41 H 1.08999 * 109.46910 * 299.99353 * 13 11 9 42 42 H 1.08998 * 109.46328 * 294.17750 * 15 14 11 43 43 H 1.09001 * 109.46356 * 54.13952 * 15 14 11 44 44 H 1.09001 * 109.50208 * 179.12232 * 16 15 14 45 45 H 1.09001 * 109.50004 * 299.23284 * 16 15 14 46 46 H 1.09002 * 109.52330 * 62.24734 * 17 16 15 47 47 H 1.08995 * 109.52110 * 182.44248 * 17 16 15 48 48 H 0.96999 * 120.00432 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.46122 * 305.85394 * 28 14 11 50 50 H 1.09001 * 109.45929 * 65.82116 * 28 14 11 51 51 H 1.08001 * 120.03355 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0093 -0.0016 6 6 5.7832 0.0149 -0.0028 7 6 3.5857 -1.1954 -0.0016 8 7 4.2875 -2.4059 -0.0021 9 6 3.7864 -3.4757 0.6464 10 8 2.6859 -3.4170 1.1531 11 6 4.5932 -4.7449 0.7421 12 1 4.9415 -5.0297 -0.2507 13 6 5.7967 -4.5163 1.6587 14 7 3.7548 -5.8178 1.2934 15 6 2.5908 -6.0701 0.4343 16 6 1.8220 -7.2851 0.9585 17 6 1.3698 -7.0154 2.3963 18 6 2.5965 -6.7081 3.2596 19 1 3.2560 -7.5758 3.2769 20 6 2.1552 -6.3836 4.6635 21 1 2.3867 -5.4201 5.0932 22 6 1.4559 -7.3165 5.3993 23 7 1.1744 -8.4899 4.8763 24 14 0.9082 -6.9139 7.1393 25 1 1.3466 -5.5394 7.4907 26 1 -0.5719 -6.9989 7.2246 27 1 1.5151 -7.8838 8.0862 28 6 3.3428 -5.5099 2.6687 29 6 2.1968 -1.1963 -0.0062 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6560 2.1325 -0.0004 34 1 4.1169 2.1398 -0.0010 35 1 6.1457 0.0163 -1.0307 36 1 6.1436 0.9061 0.5110 37 1 6.1502 -0.8738 0.5107 38 1 5.1348 -2.4750 -0.4693 39 1 5.4484 -4.2314 2.6515 40 1 6.3806 -5.4342 1.7275 41 1 6.4189 -3.7202 1.2496 42 1 1.9384 -5.1970 0.4411 43 1 2.9265 -6.2645 -0.5843 44 1 0.9495 -7.4626 0.3298 45 1 2.4697 -8.1616 0.9389 46 1 0.6912 -6.1625 2.4108 47 1 0.8595 -7.8950 2.7886 48 1 0.6827 -9.1464 5.3941 49 1 4.2248 -5.2973 3.2730 50 1 2.6869 -4.6393 2.6650 51 1 1.6568 -2.1316 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:57 Heat of formation + Delta-G solvation = -12.469934 kcal Electronic energy + Delta-G solvation = -29522.493633 eV Core-core repulsion = 25807.214219 eV Total energy + Delta-G solvation = -3715.279414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94967 -39.32792 -37.37435 -35.16371 -34.18189 -33.40066 -32.35836 -30.04756 -29.81229 -29.42139 -28.80856 -25.29182 -24.92289 -24.43076 -23.21240 -21.89561 -21.25877 -20.70997 -19.91626 -18.71715 -17.23876 -16.86159 -16.26086 -15.72208 -15.57373 -15.29720 -15.04354 -14.36719 -14.14801 -14.05709 -13.92720 -13.86336 -13.41784 -13.17794 -12.97852 -12.82864 -12.70712 -12.47069 -12.40099 -12.06530 -11.97629 -11.84540 -11.77436 -11.48541 -11.29614 -11.28265 -11.06248 -10.87707 -10.57174 -10.52170 -10.30070 -9.96636 -9.88131 -9.64849 -9.34732 -8.93189 -8.62391 -8.58476 -8.22679 -8.07617 -7.47888 -5.88986 -3.93889 1.19542 1.35188 2.63932 3.05246 3.35340 3.43025 3.47845 3.69341 4.32718 4.54127 4.64463 4.71761 4.79422 4.97348 5.03332 5.12526 5.20293 5.22135 5.33571 5.38660 5.41067 5.49147 5.55755 5.59195 5.66323 5.77078 5.79294 5.87152 5.88802 6.01138 6.07526 6.20046 6.22819 6.24762 6.36677 6.39388 6.45705 6.61217 6.62285 6.68543 6.84900 6.93915 7.03651 7.15595 7.30115 7.33633 7.48493 7.69188 7.80921 7.86863 8.18457 8.21679 8.29430 8.59742 9.10237 9.69725 11.17121 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003408 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.125212 B = 8214.051505 C = 8871.454621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.125 4.125 6 C -0.112 4.112 7 C 0.154 3.846 8 N -0.677 5.677 9 C 0.481 3.519 10 O -0.498 6.498 11 C 0.067 3.933 12 H 0.099 0.901 13 C -0.143 4.143 14 N -0.507 5.507 15 C 0.049 3.951 16 C -0.114 4.114 17 C -0.109 4.109 18 C 0.058 3.942 19 H 0.029 0.971 20 C -0.508 4.508 21 H 0.052 0.948 22 C 0.062 3.938 23 N -0.890 5.890 24 Si 0.888 3.112 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.046 3.954 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.406 0.594 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.089 0.911 48 H 0.258 0.742 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 16.202 -14.589 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.157 4.157 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.169 4.169 7 C 0.059 3.941 8 N -0.323 5.323 9 C 0.267 3.733 10 O -0.371 6.371 11 C -0.047 4.047 12 H 0.117 0.883 13 C -0.200 4.200 14 N -0.229 5.229 15 C -0.078 4.078 16 C -0.152 4.152 17 C -0.147 4.147 18 C 0.039 3.961 19 H 0.047 0.953 20 C -0.547 4.547 21 H 0.071 0.929 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.716 3.284 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.081 4.081 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.314 15.522 -14.106 22.213 hybrid contribution -0.393 0.962 0.679 1.241 sum 6.921 16.484 -13.427 22.359 Atomic orbital electron populations 1.20790 0.91078 1.03068 1.02162 1.19826 0.96194 0.92640 0.98723 1.20956 0.94094 0.97421 1.03244 1.20761 0.94009 0.96761 1.00442 1.19649 0.95956 0.91929 1.05212 1.20699 0.91161 1.03009 1.02011 1.17649 0.91331 0.84980 1.00153 1.43955 1.25023 1.09690 1.53666 1.22927 0.87929 0.85587 0.76810 1.90695 1.20065 1.82086 1.44205 1.21976 0.94988 0.86836 1.00868 0.88286 1.21851 0.95658 1.02538 0.99965 1.62553 1.20489 1.35524 1.04373 1.22219 0.91773 0.99269 0.94573 1.21633 0.97789 0.96618 0.99129 1.21624 0.99870 1.02000 0.91196 1.18626 0.92308 0.92339 0.92836 0.95254 1.21188 1.34952 1.00252 0.98299 0.92931 1.24918 0.96055 0.95037 0.97856 1.69905 1.40702 1.05691 1.36603 0.86605 0.78316 0.78333 0.85148 1.19900 1.21135 1.21113 1.22683 0.99068 1.01147 0.85157 1.21245 0.92536 0.99059 1.01106 0.91288 0.91134 0.91593 0.86265 0.86002 0.91381 0.91286 0.91719 0.75778 0.91218 0.90209 0.92513 0.93285 0.93171 0.93664 0.92380 0.95021 0.89310 0.93252 0.92530 0.92403 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.07 -0.92 5.88 -104.65 -0.62 -1.53 16 3 C -0.14 -1.51 9.70 -39.55 -0.38 -1.89 16 4 C -0.10 -1.04 9.70 -39.61 -0.38 -1.43 16 5 C -0.12 -1.37 5.90 -104.44 -0.62 -1.98 16 6 C -0.11 -0.87 9.47 36.00 0.34 -0.53 16 7 C 0.15 2.00 6.30 -83.69 -0.53 1.47 16 8 N -0.68 -7.96 4.77 -9.86 -0.05 -8.01 16 9 C 0.48 7.21 6.29 -10.99 -0.07 7.14 16 10 O -0.50 -9.54 9.07 5.55 0.05 -9.49 16 11 C 0.07 0.94 2.83 -68.86 -0.20 0.74 16 12 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.14 -1.75 8.83 37.16 0.33 -1.42 16 14 N -0.51 -9.36 4.68 -228.08 -1.07 -10.43 16 15 C 0.05 0.91 5.01 -3.83 -0.02 0.89 16 16 C -0.11 -2.34 6.09 -26.65 -0.16 -2.50 16 17 C -0.11 -2.71 5.02 -26.61 -0.13 -2.85 16 18 C 0.06 1.50 2.26 -91.70 -0.21 1.29 16 19 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.51 -14.50 8.56 -34.45 -0.29 -14.79 16 21 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -26.04 11.35 55.43 0.63 -25.41 16 24 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.05 1.01 3.96 -3.84 -0.02 1.00 16 29 C -0.12 -1.73 8.36 -39.39 -0.33 -2.06 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.06 0.49 7.15 -51.93 -0.37 0.12 16 38 H 0.41 3.39 7.81 -40.82 -0.32 3.07 16 39 H 0.07 1.02 6.22 -51.93 -0.32 0.69 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.98 5.87 -51.93 -0.30 0.68 16 43 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.06 1.23 5.91 -51.93 -0.31 0.92 16 50 H 0.06 1.40 5.52 -51.93 -0.29 1.12 16 51 H 0.14 2.32 6.13 -52.49 -0.32 1.99 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -32.28 388.79 -11.04 -43.32 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.43 Total: 4.83 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.02 Total: -17.62 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.49 Total: -43.85 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.05 Total: -9.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.28 -11.04 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.845 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds