Wall clock time and date at job start Tue Mar 31 2020 15:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.96285 * 2 1 4 4 C 1.38258 * 120.13910 * 180.02562 * 3 2 1 5 5 C 1.38128 * 120.07423 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.03759 * 179.97438 * 5 4 3 7 7 C 1.38855 * 119.92745 * 359.97438 * 5 4 3 8 8 N 1.39930 * 120.07269 * 180.02562 * 7 5 4 9 9 C 1.34770 * 120.00078 * 146.24070 * 8 7 5 10 10 O 1.21290 * 119.99966 * 5.01764 * 9 8 7 11 11 C 1.50700 * 119.99921 * 185.01807 * 9 8 7 12 12 H 1.08995 * 109.47170 * 309.22836 * 11 9 8 13 13 C 1.52998 * 109.47061 * 69.23274 * 11 9 8 14 14 N 1.46905 * 109.47156 * 189.22831 * 11 9 8 15 15 C 1.46849 * 110.99829 * 60.28459 * 14 11 9 16 16 C 1.53036 * 109.52281 * 174.15994 * 15 14 11 17 17 C 1.53119 * 109.27779 * 59.18093 * 16 15 14 18 18 C 1.53119 * 109.15970 * 302.34349 * 17 16 15 19 19 H 1.09006 * 109.50135 * 297.67998 * 18 17 16 20 20 C 1.50695 * 109.50436 * 177.60051 * 18 17 16 21 21 H 1.08004 * 119.99749 * 240.00129 * 20 18 17 22 22 C 1.37871 * 120.00148 * 59.99734 * 20 18 17 23 23 N 1.31514 * 120.00254 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99974 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47382 * 119.99878 * 24 22 20 27 27 H 1.48511 * 109.46886 * 239.99914 * 24 22 20 28 28 C 1.46842 * 111.00341 * 296.07432 * 14 11 9 29 29 C 1.38089 * 119.96701 * 180.29492 * 2 1 3 30 30 H 1.09006 * 109.46927 * 90.00766 * 1 2 3 31 31 H 1.08998 * 109.47253 * 209.99896 * 1 2 3 32 32 H 1.08999 * 109.47350 * 330.00497 * 1 2 3 33 33 H 1.07999 * 119.92538 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.96298 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47486 * 269.98046 * 6 5 4 36 36 H 1.08999 * 109.47052 * 29.98654 * 6 5 4 37 37 H 1.08999 * 109.46916 * 149.97858 * 6 5 4 38 38 H 0.96994 * 119.99674 * 326.24338 * 8 7 5 39 39 H 1.08995 * 109.47486 * 59.99756 * 13 11 9 40 40 H 1.09004 * 109.47035 * 180.02562 * 13 11 9 41 41 H 1.08999 * 109.46910 * 299.99353 * 13 11 9 42 42 H 1.08998 * 109.46328 * 294.17750 * 15 14 11 43 43 H 1.09001 * 109.46356 * 54.13952 * 15 14 11 44 44 H 1.09001 * 109.50208 * 179.12232 * 16 15 14 45 45 H 1.09001 * 109.50004 * 299.23284 * 16 15 14 46 46 H 1.09002 * 109.52330 * 62.24734 * 17 16 15 47 47 H 1.08995 * 109.52110 * 182.44248 * 17 16 15 48 48 H 0.96999 * 120.00432 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.46122 * 305.85394 * 28 14 11 50 50 H 1.09001 * 109.45929 * 65.82116 * 28 14 11 51 51 H 1.08001 * 120.03355 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0093 -0.0016 6 6 5.7832 0.0149 -0.0028 7 6 3.5857 -1.1954 -0.0016 8 7 4.2875 -2.4059 -0.0021 9 6 3.7864 -3.4757 0.6464 10 8 2.6859 -3.4170 1.1531 11 6 4.5932 -4.7449 0.7421 12 1 4.9415 -5.0297 -0.2507 13 6 5.7967 -4.5163 1.6587 14 7 3.7548 -5.8178 1.2934 15 6 2.5908 -6.0701 0.4343 16 6 1.8220 -7.2851 0.9585 17 6 1.3698 -7.0154 2.3963 18 6 2.5965 -6.7081 3.2596 19 1 3.2560 -7.5758 3.2769 20 6 2.1552 -6.3836 4.6635 21 1 2.3867 -5.4201 5.0932 22 6 1.4559 -7.3165 5.3993 23 7 1.1744 -8.4899 4.8763 24 14 0.9082 -6.9139 7.1393 25 1 1.3466 -5.5394 7.4907 26 1 -0.5719 -6.9989 7.2246 27 1 1.5151 -7.8838 8.0862 28 6 3.3428 -5.5099 2.6687 29 6 2.1968 -1.1963 -0.0062 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6560 2.1325 -0.0004 34 1 4.1169 2.1398 -0.0010 35 1 6.1457 0.0163 -1.0307 36 1 6.1436 0.9061 0.5110 37 1 6.1502 -0.8738 0.5107 38 1 5.1348 -2.4750 -0.4693 39 1 5.4484 -4.2314 2.6515 40 1 6.3806 -5.4342 1.7275 41 1 6.4189 -3.7202 1.2496 42 1 1.9384 -5.1970 0.4411 43 1 2.9265 -6.2645 -0.5843 44 1 0.9495 -7.4626 0.3298 45 1 2.4697 -8.1616 0.9389 46 1 0.6912 -6.1625 2.4108 47 1 0.8595 -7.8950 2.7886 48 1 0.6827 -9.1464 5.3941 49 1 4.2248 -5.2973 3.2730 50 1 2.6869 -4.6393 2.6650 51 1 1.6568 -2.1316 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595612417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:56 Heat of formation + Delta-G solvation = -32.040819 kcal Electronic energy + Delta-G solvation = -29523.342290 eV Core-core repulsion = 25807.214219 eV Total energy + Delta-G solvation = -3716.128071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07981 -40.43039 -38.82139 -36.21824 -35.85830 -34.37336 -34.08117 -31.73800 -31.23117 -30.23582 -29.95625 -27.07608 -26.06130 -25.63497 -24.49245 -23.12937 -23.01493 -21.66958 -21.11299 -20.46001 -18.59122 -18.13710 -17.93609 -16.94348 -16.60843 -16.58338 -16.41893 -15.96884 -15.65328 -15.24598 -14.97485 -14.87742 -14.75265 -14.35279 -14.16188 -14.09235 -14.02619 -13.82602 -13.67661 -13.52118 -13.06593 -12.90791 -12.85632 -12.81469 -12.64602 -12.54612 -12.46200 -12.31313 -12.16731 -12.07707 -11.81456 -11.67423 -11.40591 -11.26444 -11.00919 -10.86880 -10.63381 -10.38352 -9.52991 -9.05977 -8.94026 -8.09239 -6.22615 0.29450 0.43950 1.36485 1.37677 1.49762 1.53605 2.05825 2.40848 2.80620 2.98529 3.17020 3.66944 3.91157 3.93173 3.99139 4.11775 4.13711 4.21216 4.29472 4.33528 4.36966 4.46655 4.55716 4.70746 4.72886 4.74742 4.75794 4.82954 4.83786 4.84691 4.88300 4.91151 4.96061 5.07159 5.11699 5.13165 5.23922 5.28818 5.30892 5.38636 5.41497 5.48236 5.50709 5.58453 5.62287 5.71790 5.94231 6.10059 6.13097 6.18063 6.19188 6.46090 6.46919 6.89051 7.15837 7.44442 8.95677 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003408 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.125212 B = 8214.051505 C = 8871.454621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.123 4.123 6 C -0.111 4.111 7 C 0.131 3.869 8 N -0.656 5.656 9 C 0.480 3.520 10 O -0.546 6.546 11 C 0.065 3.935 12 H 0.140 0.860 13 C -0.138 4.138 14 N -0.511 5.511 15 C 0.055 3.945 16 C -0.108 4.108 17 C -0.100 4.100 18 C 0.056 3.944 19 H -0.001 1.001 20 C -0.534 4.534 21 H 0.042 0.958 22 C 0.015 3.985 23 N -0.914 5.914 24 Si 0.952 3.048 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.274 1.274 28 C 0.067 3.933 29 C -0.148 4.148 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.425 0.575 39 H 0.039 0.961 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.008 0.992 47 H 0.058 0.942 48 H 0.261 0.739 49 H 0.056 0.944 50 H 0.034 0.966 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 18.438 -16.021 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.157 4.157 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.168 4.168 7 C 0.037 3.963 8 N -0.304 5.304 9 C 0.268 3.732 10 O -0.423 6.423 11 C -0.047 4.047 12 H 0.158 0.842 13 C -0.196 4.196 14 N -0.233 5.233 15 C -0.072 4.072 16 C -0.145 4.145 17 C -0.139 4.139 18 C 0.038 3.962 19 H 0.017 0.983 20 C -0.573 4.573 21 H 0.060 0.940 22 C -0.183 4.183 23 N -0.553 5.553 24 Si 0.778 3.222 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.199 1.199 28 C -0.060 4.060 29 C -0.169 4.169 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.264 0.736 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.052 0.948 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.632 17.780 -15.576 25.525 hybrid contribution -1.086 0.346 1.075 1.567 sum 8.546 18.126 -14.501 24.736 Atomic orbital electron populations 1.20793 0.90389 1.02773 1.02913 1.20074 0.97062 0.92859 0.99274 1.21292 0.94813 0.97560 1.02045 1.21213 0.93955 0.97894 0.99025 1.20042 0.97836 0.91096 1.03557 1.20789 0.88574 1.03814 1.03607 1.17825 0.91034 0.86039 1.01417 1.43636 1.25327 1.08693 1.52733 1.22961 0.87266 0.86501 0.76498 1.90706 1.22208 1.82915 1.46481 1.22207 0.94251 0.85241 1.02996 0.84225 1.21862 0.95242 1.04286 0.98177 1.62454 1.20371 1.37904 1.02620 1.22152 0.91589 0.97302 0.96178 1.21545 0.98890 0.97719 0.96377 1.21413 0.98826 0.99414 0.94204 1.18547 0.92468 0.92672 0.92560 0.98299 1.21508 1.35730 1.00036 1.00019 0.93987 1.25687 0.95945 0.94880 1.01831 1.70032 1.40914 1.06382 1.38010 0.85603 0.77973 0.78263 0.80400 1.19681 1.20569 1.19947 1.22207 0.97991 0.98119 0.87673 1.21178 0.93674 0.98563 1.03459 0.90019 0.93338 0.89874 0.83794 0.82827 0.89239 0.89938 0.91515 0.73566 0.94179 0.89636 0.88370 0.95027 0.89330 0.91760 0.92425 0.97297 0.92374 0.93025 0.92564 0.94769 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 10.01 71.24 0.71 -1.72 16 2 C -0.09 -2.33 5.88 -19.88 -0.12 -2.44 16 3 C -0.14 -2.76 9.70 22.29 0.22 -2.55 16 4 C -0.10 -1.81 9.70 22.25 0.22 -1.60 16 5 C -0.12 -2.37 5.90 -19.74 -0.12 -2.49 16 6 C -0.11 -1.29 9.47 71.23 0.67 -0.62 16 7 C 0.13 3.32 6.30 38.15 0.24 3.56 16 8 N -0.66 -14.45 4.77 -303.50 -1.45 -15.90 16 9 C 0.48 14.21 6.29 87.66 0.55 14.76 16 10 O -0.55 -22.00 9.07 -3.06 -0.03 -22.03 16 11 C 0.07 1.72 2.83 44.17 0.13 1.85 16 12 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 13 C -0.14 -3.09 8.83 71.98 0.64 -2.46 16 14 N -0.51 -18.80 4.68 -875.52 -4.10 -22.90 16 15 C 0.06 2.04 5.01 86.33 0.43 2.47 16 16 C -0.11 -4.49 6.09 30.65 0.19 -4.30 16 17 C -0.10 -5.29 5.02 30.67 0.15 -5.13 16 18 C 0.06 3.09 2.26 -11.49 -0.03 3.06 16 19 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 20 C -0.53 -32.00 8.56 25.60 0.22 -31.78 16 21 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 22 C 0.02 0.89 5.30 84.65 0.45 1.34 16 23 N -0.91 -55.38 11.35 21.44 0.24 -55.13 16 24 Si 0.95 46.26 29.54 68.60 2.03 48.29 16 25 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.07 3.12 3.96 86.33 0.34 3.46 16 29 C -0.15 -4.46 8.36 22.39 0.19 -4.28 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 32 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.07 0.76 7.15 -2.39 -0.02 0.74 16 38 H 0.42 5.74 7.81 -92.71 -0.72 5.02 16 39 H 0.04 1.14 6.22 -2.39 -0.01 1.13 16 40 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.03 1.30 5.87 -2.39 -0.01 1.29 16 43 H 0.09 2.61 8.12 -2.39 -0.02 2.59 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.06 3.38 6.15 -2.39 -0.01 3.37 16 48 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.06 2.56 5.91 -2.38 -0.01 2.54 16 50 H 0.03 1.77 5.52 -2.39 -0.01 1.75 16 51 H 0.11 3.91 6.13 -2.91 -0.02 3.89 16 Total: -1.00 -76.34 388.79 1.98 -74.36 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.20 Total: 22.17 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.08 Total: -28.86 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -5.30 Total: -93.92 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.03 Total: -22.03 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.34 1.98 -74.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.320 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds