Wall clock time and date at job start Tue Mar 31 2020 15:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38306 * 119.96564 * 2 1 4 4 C 1.38254 * 120.14494 * 179.76372 * 3 2 1 5 5 C 1.38138 * 120.07123 * 0.51126 * 4 3 2 6 6 C 1.50698 * 120.04099 * 179.76506 * 5 4 3 7 7 C 1.38853 * 119.92241 * 359.74619 * 5 4 3 8 8 N 1.39932 * 120.06681 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00144 * 151.55457 * 8 7 5 10 10 O 1.21290 * 119.99535 * 4.21164 * 9 8 7 11 11 C 1.50696 * 120.00114 * 184.21926 * 9 8 7 12 12 H 1.08998 * 109.47379 * 46.13592 * 11 9 8 13 13 C 1.52999 * 109.46898 * 286.13926 * 11 9 8 14 14 N 1.46904 * 109.46960 * 166.14053 * 11 9 8 15 15 C 1.46850 * 110.99404 * 196.04355 * 14 11 9 16 16 C 1.53044 * 109.51784 * 174.16284 * 15 14 11 17 17 C 1.53109 * 109.28202 * 59.17740 * 16 15 14 18 18 C 1.53122 * 109.16278 * 302.34623 * 17 16 15 19 19 H 1.09005 * 109.53368 * 297.69239 * 18 17 16 20 20 C 1.50700 * 109.50531 * 177.59650 * 18 17 16 21 21 H 1.08004 * 119.99569 * 240.19714 * 20 18 17 22 22 C 1.37868 * 120.00092 * 60.19547 * 20 18 17 23 23 N 1.31511 * 120.00038 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00188 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46741 * 59.99817 * 24 22 20 26 26 H 1.48494 * 109.47129 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47173 * 300.00242 * 24 22 20 28 28 C 1.46849 * 111.00188 * 71.83391 * 14 11 9 29 29 C 1.38084 * 119.96846 * 180.27446 * 2 1 3 30 30 H 1.08991 * 109.47024 * 269.72096 * 1 2 3 31 31 H 1.09002 * 109.46673 * 29.72168 * 1 2 3 32 32 H 1.08997 * 109.46577 * 149.72440 * 1 2 3 33 33 H 1.08003 * 119.92992 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.97146 * 180.23712 * 4 3 2 35 35 H 1.09002 * 109.47345 * 269.98408 * 6 5 4 36 36 H 1.09005 * 109.46723 * 29.98249 * 6 5 4 37 37 H 1.09000 * 109.47414 * 149.97755 * 6 5 4 38 38 H 0.96996 * 119.99736 * 331.54895 * 8 7 5 39 39 H 1.08998 * 109.47263 * 180.02562 * 13 11 9 40 40 H 1.09006 * 109.47142 * 299.99977 * 13 11 9 41 41 H 1.08997 * 109.47406 * 59.99931 * 13 11 9 42 42 H 1.09003 * 109.46514 * 294.17046 * 15 14 11 43 43 H 1.08995 * 109.46580 * 54.14498 * 15 14 11 44 44 H 1.08998 * 109.50125 * 299.23143 * 16 15 14 45 45 H 1.09004 * 109.53387 * 179.14313 * 16 15 14 46 46 H 1.09000 * 109.52327 * 182.43923 * 17 16 15 47 47 H 1.09001 * 109.52257 * 62.25081 * 17 16 15 48 48 H 0.97005 * 120.00406 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.45509 * 305.85525 * 28 14 11 50 50 H 1.08997 * 109.45783 * 65.81984 * 28 14 11 51 51 H 1.08003 * 120.03645 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2025 0.0049 5 6 4.2763 0.0093 -0.0008 6 6 5.7833 0.0148 -0.0008 7 6 3.5857 -1.1953 -0.0062 8 7 4.2876 -2.4058 -0.0125 9 6 3.7382 -3.5063 0.5385 10 8 2.6058 -3.4670 0.9712 11 6 4.5309 -4.7856 0.6170 12 1 5.5340 -4.5695 0.9847 13 6 4.6225 -5.4150 -0.7745 14 7 3.8638 -5.7195 1.5339 15 6 4.7711 -6.8027 1.9337 16 6 4.0939 -7.6708 2.9968 17 6 2.7973 -8.2507 2.4252 18 6 1.8904 -7.1032 1.9719 19 1 1.6269 -6.4858 2.8307 20 6 0.6368 -7.6666 1.3538 21 1 0.3925 -7.4402 0.3264 22 6 -0.1981 -8.4711 2.0998 23 7 0.0992 -8.7463 3.3509 24 14 -1.7524 -9.1690 1.3338 25 1 -1.3930 -10.0112 0.1648 26 1 -2.4704 -9.9957 2.3369 27 1 -2.6290 -8.0552 0.8907 28 6 2.6314 -6.2516 0.9385 29 6 2.1968 -1.1962 -0.0057 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3633 0.8925 -0.5095 32 1 -0.3632 -0.8875 -0.5181 33 1 1.6561 2.1325 0.0004 34 1 4.1169 2.1397 0.0088 35 1 6.1466 0.0208 -1.0284 36 1 6.1433 0.9039 0.5171 37 1 6.1499 -0.8761 0.5091 38 1 5.1695 -2.4529 -0.4135 39 1 5.1954 -6.3405 -0.7177 40 1 3.6193 -5.6311 -1.1423 41 1 5.1174 -4.7220 -1.4549 42 1 5.0114 -7.4147 1.0643 43 1 5.6874 -6.3768 2.3424 44 1 3.8658 -7.0625 3.8720 45 1 4.7613 -8.4838 3.2827 46 1 2.2898 -8.8345 3.1930 47 1 3.0287 -8.8903 1.5734 48 1 -0.4880 -9.3127 3.8757 49 1 1.9938 -5.4253 0.6243 50 1 2.8818 -6.8661 0.0738 51 1 1.6568 -2.1316 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:00 Heat of formation + Delta-G solvation = -12.741514 kcal Electronic energy + Delta-G solvation = -29176.388292 eV Core-core repulsion = 25461.097102 eV Total energy + Delta-G solvation = -3715.291190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79190 -39.18800 -37.71920 -35.12400 -34.25088 -33.31484 -32.27138 -30.03836 -29.78796 -29.36891 -28.69032 -25.26957 -24.90184 -24.78414 -23.23861 -21.97624 -21.32262 -20.66920 -19.89783 -18.34954 -17.29409 -16.83023 -16.27679 -15.72756 -15.58219 -15.05415 -14.69090 -14.49870 -14.20424 -14.11081 -13.89338 -13.76787 -13.44700 -13.35154 -12.98783 -12.85355 -12.78583 -12.54437 -12.32115 -12.13729 -12.01265 -11.85857 -11.63617 -11.58032 -11.46719 -11.28614 -11.17300 -10.85997 -10.62418 -10.60476 -10.28213 -10.04362 -9.78478 -9.49934 -9.34904 -8.88203 -8.59682 -8.53264 -8.22289 -7.99813 -7.63533 -5.89216 -3.94414 1.25486 1.41745 2.75357 2.99240 3.37417 3.41681 3.44545 3.76173 4.39403 4.55926 4.63915 4.76152 4.77237 5.02979 5.07073 5.08494 5.12479 5.25965 5.36191 5.40737 5.42714 5.53531 5.54657 5.61375 5.66735 5.71400 5.72489 5.83357 5.84502 5.96113 6.01508 6.12293 6.15268 6.26106 6.31253 6.43253 6.46115 6.49258 6.64490 6.70824 6.73211 6.80657 7.09243 7.12777 7.27107 7.35405 7.47464 7.66453 7.80840 7.85066 8.20056 8.26139 8.31371 8.57468 9.09310 9.68977 11.17070 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003403 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.069732 B = 8226.398586 C = 9862.000145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.111 4.111 7 C 0.159 3.841 8 N -0.677 5.677 9 C 0.517 3.483 10 O -0.481 6.481 11 C 0.067 3.933 12 H 0.097 0.903 13 C -0.182 4.182 14 N -0.517 5.517 15 C 0.064 3.936 16 C -0.117 4.117 17 C -0.112 4.112 18 C 0.058 3.942 19 H 0.034 0.966 20 C -0.510 4.510 21 H 0.051 0.949 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.889 3.111 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.062 3.938 29 C -0.128 4.128 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.406 0.594 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.029 0.971 48 H 0.259 0.741 49 H 0.078 0.922 50 H 0.019 0.981 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 16.524 -8.251 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.161 4.161 4 C -0.118 4.118 5 C -0.133 4.133 6 C -0.168 4.168 7 C 0.064 3.936 8 N -0.323 5.323 9 C 0.304 3.696 10 O -0.352 6.352 11 C -0.046 4.046 12 H 0.115 0.885 13 C -0.241 4.241 14 N -0.241 5.241 15 C -0.064 4.064 16 C -0.154 4.154 17 C -0.150 4.150 18 C 0.039 3.961 19 H 0.052 0.948 20 C -0.549 4.549 21 H 0.070 0.930 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.717 3.283 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.064 4.064 29 C -0.148 4.148 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.048 0.952 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.037 0.963 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.779 16.592 -7.305 21.619 hybrid contribution -0.065 -0.833 -1.277 1.526 sum 11.714 15.759 -8.582 21.429 Atomic orbital electron populations 1.20787 0.91042 1.02601 1.02627 1.19850 0.96228 0.92622 0.98419 1.20945 0.94072 0.97426 1.03628 1.20730 0.94001 0.96656 1.00450 1.19579 0.95842 0.91893 1.05963 1.20688 0.91268 1.02882 1.01980 1.17624 0.91389 0.84636 0.99955 1.43641 1.21243 1.08102 1.59275 1.20924 0.87770 0.84446 0.76501 1.90695 1.17765 1.83071 1.43673 1.21551 0.97519 0.91726 0.93778 0.88523 1.22406 1.03774 1.01655 0.96251 1.61964 1.05912 1.16978 1.39245 1.22077 0.94501 0.91957 0.97865 1.21668 0.98512 0.97412 0.97846 1.21673 0.93053 0.99811 1.00425 1.18621 0.91974 0.91609 0.93912 0.94752 1.21098 1.06171 1.29686 0.97971 0.93047 1.24913 0.97675 0.96421 0.94807 1.69884 1.37542 1.37799 1.07628 0.86714 0.83686 0.79036 0.78862 1.20462 1.21359 1.20315 1.22516 0.88785 0.98221 0.96861 1.21499 0.92523 0.99629 1.01124 0.90940 0.91773 0.91288 0.86338 0.86075 0.91434 0.91294 0.91849 0.75813 0.91152 0.90858 0.92337 0.95536 0.92464 0.92038 0.93430 0.89138 0.95238 0.93109 0.90376 0.96319 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.07 -0.91 5.88 -104.65 -0.62 -1.53 16 3 C -0.14 -1.57 9.69 -39.55 -0.38 -1.95 16 4 C -0.10 -1.03 9.70 -39.61 -0.38 -1.42 16 5 C -0.13 -1.43 5.90 -104.43 -0.62 -2.04 16 6 C -0.11 -0.85 9.45 36.00 0.34 -0.51 16 7 C 0.16 2.11 6.39 -83.69 -0.53 1.57 16 8 N -0.68 -8.15 4.90 -9.86 -0.05 -8.20 16 9 C 0.52 8.03 6.84 -10.99 -0.08 7.95 16 10 O -0.48 -9.66 11.36 5.55 0.06 -9.60 16 11 C 0.07 0.96 2.70 -68.86 -0.19 0.77 16 12 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 13 C -0.18 -2.25 8.31 37.16 0.31 -1.94 16 14 N -0.52 -9.61 4.35 -228.08 -0.99 -10.60 16 15 C 0.06 1.08 5.22 -3.83 -0.02 1.06 16 16 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 17 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 18 C 0.06 1.50 2.26 -91.69 -0.21 1.29 16 19 H 0.03 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.51 -14.48 8.56 -34.44 -0.29 -14.78 16 21 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 22 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.89 -26.04 11.36 55.43 0.63 -25.41 16 24 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.06 1.37 3.40 -3.83 -0.01 1.36 16 29 C -0.13 -1.91 8.41 -39.40 -0.33 -2.24 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.06 0.47 7.06 -51.93 -0.37 0.10 16 38 H 0.41 3.45 7.56 -40.82 -0.31 3.14 16 39 H 0.07 0.84 7.07 -51.93 -0.37 0.48 16 40 H 0.07 1.08 6.44 -51.93 -0.33 0.74 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.43 7.11 -51.93 -0.37 0.06 16 43 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.08 1.85 5.89 -51.93 -0.31 1.54 16 50 H 0.02 0.40 6.58 -51.93 -0.34 0.06 16 51 H 0.15 2.62 5.73 -52.48 -0.30 2.32 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -32.40 390.82 -10.96 -43.36 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.44 Total: 4.62 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.04 Total: -16.88 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.41 Total: -44.22 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.40 -10.96 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.617 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds