Wall clock time and date at job start Tue Mar 31 2020 16:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99938 * 2 1 4 4 C 1.50701 * 109.47015 * 66.05181 * 3 2 1 5 5 O 1.21295 * 119.99807 * 6.10429 * 4 3 2 6 6 N 1.34772 * 120.00164 * 186.11668 * 4 3 2 7 7 C 1.46498 * 120.00165 * 184.95889 * 6 4 3 8 8 C 1.50697 * 109.47496 * 89.99110 * 7 6 4 9 9 H 1.08002 * 120.00146 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00179 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99590 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00237 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47134 * 60.00237 * 12 10 8 14 14 H 1.48497 * 109.47100 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47135 * 300.00101 * 12 10 8 16 16 C 1.39920 * 120.00115 * 4.94810 * 6 4 3 17 17 C 1.38875 * 120.07463 * 290.35634 * 16 6 4 18 18 C 1.38114 * 119.93208 * 179.67466 * 17 16 6 19 19 C 1.38275 * 120.06660 * 0.61942 * 18 17 16 20 20 C 1.38282 * 120.14706 * 359.67631 * 19 18 17 21 21 C 1.38118 * 120.06532 * 0.02562 * 20 19 18 22 22 C 1.46901 * 111.00070 * 236.05193 * 2 1 3 23 23 C 1.53002 * 109.46907 * 293.95432 * 22 2 1 24 24 H 1.08997 * 115.56107 * 29.29237 * 23 22 2 25 25 C 1.53006 * 117.49645 * 243.60961 * 23 22 2 26 26 C 1.53000 * 117.50197 * 174.98857 * 23 22 2 27 27 C 1.52999 * 117.49603 * 359.97438 * 26 23 22 28 28 C 1.52997 * 117.50086 * 214.98163 * 26 23 22 29 29 H 1.09003 * 109.47288 * 183.94862 * 1 2 3 30 30 H 1.09002 * 109.47122 * 303.94841 * 1 2 3 31 31 H 1.09001 * 109.47567 * 63.94855 * 1 2 3 32 32 H 1.08999 * 109.46999 * 186.04431 * 3 2 1 33 33 H 1.08999 * 109.47305 * 306.04635 * 3 2 1 34 34 H 1.09001 * 109.46921 * 209.99593 * 7 6 4 35 35 H 1.09004 * 109.46826 * 329.99330 * 7 6 4 36 36 H 0.97004 * 119.99681 * 179.97438 * 11 10 8 37 37 H 1.08007 * 120.03039 * 359.97279 * 17 16 6 38 38 H 1.08004 * 119.96222 * 180.34178 * 18 17 16 39 39 H 1.08007 * 119.92729 * 179.70345 * 19 18 17 40 40 H 1.07997 * 119.96979 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.03201 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47403 * 173.95878 * 22 2 1 43 43 H 1.08998 * 109.47138 * 53.94769 * 22 2 1 44 44 H 1.09003 * 117.49504 * 145.01820 * 25 23 22 45 45 H 1.08990 * 117.49887 * 359.97438 * 25 23 22 46 46 H 1.09000 * 109.47442 * 180.02562 * 27 26 23 47 47 H 1.08993 * 109.47829 * 300.02276 * 27 26 23 48 48 H 1.09012 * 109.47123 * 60.02008 * 27 26 23 49 49 H 1.09004 * 109.46526 * 299.98247 * 28 26 23 50 50 H 1.09002 * 109.47571 * 59.97650 * 28 26 23 51 51 H 1.08994 * 109.47513 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.1032 1.4136 2.1846 6 7 1.9092 3.3551 1.4752 7 6 1.6611 3.9861 2.7738 8 6 2.8948 3.8721 3.6317 9 1 3.7759 3.3793 3.2478 10 6 2.8993 4.3979 4.9063 11 7 1.8266 4.9984 5.3736 12 14 4.4287 4.2571 5.9695 13 1 5.5637 4.9384 5.2965 14 1 4.1771 4.8967 7.2858 15 1 4.7610 2.8239 6.1714 16 6 2.4291 4.1105 0.4183 17 6 3.7257 3.8861 -0.0256 18 6 4.2336 4.6288 -1.0735 19 6 3.4570 5.6038 -1.6720 20 6 2.1676 5.8340 -1.2283 21 6 1.6518 5.0904 -0.1849 22 6 1.9954 -0.7659 -1.1377 23 6 1.6314 -2.2425 -0.9705 24 1 0.7109 -2.4408 -0.4214 25 6 2.7806 -3.2392 -0.8062 26 6 1.9897 -3.1925 -2.1151 27 6 2.6842 -2.5929 -3.3395 28 6 1.0286 -4.3479 -2.4015 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3634 0.4513 -0.9232 32 1 3.0796 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 1.4174 5.0382 2.6259 35 1 0.8279 3.4860 3.2675 36 1 1.8295 5.3680 6.2705 37 1 4.3346 3.1282 0.4449 38 1 5.2400 4.4509 -1.4228 39 1 3.8581 6.1865 -2.4881 40 1 1.5634 6.5959 -1.6981 41 1 0.6446 5.2704 0.1609 42 1 3.0797 -0.6611 -1.1757 43 1 1.5610 -0.3871 -2.0628 44 1 2.6161 -4.0931 -0.1490 45 1 3.7959 -2.8429 -0.8176 46 1 2.8773 -3.3793 -4.0692 47 1 2.0424 -1.8332 -3.7856 48 1 3.6277 -2.1390 -3.0362 49 1 0.9471 -4.9803 -1.5174 50 1 0.0462 -3.9491 -2.6546 51 1 1.4074 -4.9373 -3.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595915512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:52 Heat of formation + Delta-G solvation = 26.229022 kcal Electronic energy + Delta-G solvation = -28678.082536 eV Core-core repulsion = 24964.481235 eV Total energy + Delta-G solvation = -3713.601301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.02532 -39.09688 -38.15226 -36.18117 -34.69829 -32.68437 -30.74909 -30.03934 -29.39163 -28.55374 -28.01305 -26.91294 -26.59680 -23.66674 -22.64225 -22.25937 -21.80021 -20.62206 -19.04442 -18.71014 -17.02554 -16.57500 -16.23643 -15.70970 -15.58599 -15.30878 -14.88304 -14.79548 -14.27782 -14.18523 -14.10405 -13.94836 -13.53482 -13.27114 -13.16800 -12.80532 -12.65661 -12.51339 -12.39476 -12.30180 -12.23050 -11.95661 -11.71881 -11.46385 -11.43577 -11.35721 -11.16792 -11.01729 -10.92195 -10.84714 -10.60575 -10.16737 -9.91702 -9.72175 -9.66391 -9.23555 -8.71052 -8.58997 -8.42779 -8.06602 -7.67962 -6.05134 -4.09636 1.55322 1.62522 3.30920 3.33259 3.36852 3.40505 3.44205 3.70081 4.00388 4.18862 4.45279 4.52899 4.66941 4.72846 4.89929 4.99626 5.15286 5.16276 5.24588 5.29865 5.32395 5.34428 5.39616 5.44561 5.48616 5.54613 5.57803 5.67187 5.70050 5.71246 5.73722 5.76691 5.77979 5.80320 5.81977 5.92427 6.03763 6.11902 6.17978 6.24439 6.33438 6.58242 6.70863 6.80755 6.91917 7.10379 7.18359 7.19955 7.38249 7.50148 7.90652 8.19545 8.37621 8.86980 9.03039 9.54898 11.03200 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.003401 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.316122 B = 8230.425009 C = 9687.537292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.040 3.960 4 C 0.516 3.484 5 O -0.509 6.509 6 N -0.566 5.566 7 C 0.250 3.750 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.165 3.835 17 C -0.124 4.124 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.126 4.126 22 C 0.089 3.911 23 C -0.134 4.134 24 H 0.109 0.891 25 C -0.165 4.165 26 C -0.134 4.134 27 C -0.115 4.115 28 C -0.113 4.113 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.017 0.983 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -8.864 -20.170 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.244 5.244 3 C -0.092 4.092 4 C 0.303 3.697 5 O -0.383 6.383 6 N -0.295 5.295 7 C 0.132 3.868 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.139 4.139 11 N -0.533 5.533 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.073 3.927 17 C -0.144 4.144 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.129 4.129 21 C -0.145 4.145 22 C -0.039 4.039 23 C -0.152 4.152 24 H 0.127 0.873 25 C -0.202 4.202 26 C -0.135 4.135 27 C -0.172 4.172 28 C -0.170 4.170 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.584 -9.361 -19.021 21.207 hybrid contribution 0.713 0.554 0.074 0.906 sum 1.297 -8.807 -18.946 20.933 Atomic orbital electron populations 1.22527 0.86815 1.02424 1.00874 1.61557 1.08592 1.11937 1.42271 1.22055 1.01649 0.89369 0.96078 1.20185 0.79329 0.81412 0.88802 1.90667 1.41083 1.62739 1.43781 1.45989 1.62524 1.08538 1.12488 1.19397 0.97962 0.92857 0.76570 1.21336 0.98896 1.37290 0.98983 0.92457 1.24908 0.96513 0.95003 0.97515 1.69922 1.28007 1.37760 1.17651 0.86548 0.82958 0.78472 0.79425 1.20214 1.21142 1.20078 1.17748 0.91959 0.93838 0.89192 1.21412 0.94294 1.01186 0.97527 1.20977 0.99542 0.96169 0.96236 1.21055 0.94701 0.98788 1.00783 1.20966 0.95792 0.99243 0.96888 1.21331 1.00138 0.96871 0.96190 1.21654 0.99667 0.91428 0.91113 1.22412 1.00169 0.91233 1.01407 0.87319 1.23268 0.96556 1.01713 0.98627 1.21638 1.01749 0.99507 0.90585 1.21329 0.99645 1.00338 0.95848 1.21334 0.98113 0.96064 1.01534 0.91421 0.89654 0.96430 0.88312 0.92734 0.94856 0.93358 0.92622 0.85867 0.86157 0.86420 0.86140 0.85862 0.90809 0.94608 0.88982 0.88858 0.92347 0.92356 0.92393 0.92485 0.92391 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.02 60.06 0.54 0.86 16 2 N -0.52 -8.00 4.46 -244.37 -1.09 -9.09 16 3 C 0.04 0.64 4.00 -4.97 -0.02 0.62 16 4 C 0.52 10.89 7.14 -10.99 -0.08 10.82 16 5 O -0.51 -12.71 14.21 5.54 0.08 -12.63 16 6 N -0.57 -12.25 2.50 -114.74 -0.29 -12.54 16 7 C 0.25 6.59 5.15 -5.20 -0.03 6.56 16 8 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 12 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 16 C 0.16 2.98 4.32 -83.70 -0.36 2.62 16 17 C -0.12 -1.99 8.56 -39.39 -0.34 -2.32 16 18 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 19 C -0.13 -1.64 10.04 -39.55 -0.40 -2.04 16 20 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 21 C -0.13 -2.01 9.75 -39.39 -0.38 -2.39 16 22 C 0.09 1.07 4.32 -3.82 -0.02 1.05 16 23 C -0.13 -1.48 5.41 -90.62 -0.49 -1.97 16 24 H 0.11 1.29 6.38 -51.93 -0.33 0.96 16 25 C -0.16 -1.68 9.47 -26.73 -0.25 -1.93 16 26 C -0.13 -1.23 2.70 -154.51 -0.42 -1.64 16 27 C -0.11 -0.92 8.86 37.16 0.33 -0.59 16 28 C -0.11 -0.90 9.85 37.16 0.37 -0.53 16 29 H 0.07 0.89 6.33 -51.93 -0.33 0.56 16 30 H 0.08 1.51 6.04 -51.93 -0.31 1.19 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 1.48 6.93 -51.93 -0.36 1.12 16 33 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.03 0.90 7.90 -51.93 -0.41 0.49 16 35 H 0.05 1.42 7.36 -51.93 -0.38 1.04 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.12 1.97 7.75 -52.48 -0.41 1.57 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.07 0.85 7.66 -51.93 -0.40 0.46 16 43 H 0.04 0.40 7.75 -51.93 -0.40 0.00 16 44 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 45 H 0.09 0.94 7.94 -51.93 -0.41 0.52 16 46 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 47 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 48 H 0.06 0.46 7.90 -51.92 -0.41 0.05 16 49 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.41 7.92 -51.93 -0.41 -0.01 16 LS Contribution 410.86 15.07 6.19 6.19 Total: -1.00 -32.51 410.86 -10.85 -43.36 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.70 Total: 1.85 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.76 Total: -8.24 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.64 Total: -47.62 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.51 -10.85 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.589 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds