Wall clock time and date at job start Tue Mar 31 2020 16:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99938 * 2 1 4 4 C 1.50701 * 109.47015 * 66.05181 * 3 2 1 5 5 O 1.21295 * 119.99807 * 6.10429 * 4 3 2 6 6 N 1.34772 * 120.00164 * 186.11668 * 4 3 2 7 7 C 1.46498 * 120.00165 * 184.95889 * 6 4 3 8 8 C 1.50697 * 109.47496 * 89.99110 * 7 6 4 9 9 H 1.08002 * 120.00146 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00179 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99590 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00237 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47134 * 60.00237 * 12 10 8 14 14 H 1.48497 * 109.47100 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47135 * 300.00101 * 12 10 8 16 16 C 1.39920 * 120.00115 * 4.94810 * 6 4 3 17 17 C 1.38875 * 120.07463 * 290.35634 * 16 6 4 18 18 C 1.38114 * 119.93208 * 179.67466 * 17 16 6 19 19 C 1.38275 * 120.06660 * 0.61942 * 18 17 16 20 20 C 1.38282 * 120.14706 * 359.67631 * 19 18 17 21 21 C 1.38118 * 120.06532 * 0.02562 * 20 19 18 22 22 C 1.46901 * 111.00070 * 236.05193 * 2 1 3 23 23 C 1.53002 * 109.46907 * 293.95432 * 22 2 1 24 24 H 1.08997 * 115.56107 * 29.29237 * 23 22 2 25 25 C 1.53006 * 117.49645 * 243.60961 * 23 22 2 26 26 C 1.53000 * 117.50197 * 174.98857 * 23 22 2 27 27 C 1.52999 * 117.49603 * 359.97438 * 26 23 22 28 28 C 1.52997 * 117.50086 * 214.98163 * 26 23 22 29 29 H 1.09003 * 109.47288 * 183.94862 * 1 2 3 30 30 H 1.09002 * 109.47122 * 303.94841 * 1 2 3 31 31 H 1.09001 * 109.47567 * 63.94855 * 1 2 3 32 32 H 1.08999 * 109.46999 * 186.04431 * 3 2 1 33 33 H 1.08999 * 109.47305 * 306.04635 * 3 2 1 34 34 H 1.09001 * 109.46921 * 209.99593 * 7 6 4 35 35 H 1.09004 * 109.46826 * 329.99330 * 7 6 4 36 36 H 0.97004 * 119.99681 * 179.97438 * 11 10 8 37 37 H 1.08007 * 120.03039 * 359.97279 * 17 16 6 38 38 H 1.08004 * 119.96222 * 180.34178 * 18 17 16 39 39 H 1.08007 * 119.92729 * 179.70345 * 19 18 17 40 40 H 1.07997 * 119.96979 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.03201 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47403 * 173.95878 * 22 2 1 43 43 H 1.08998 * 109.47138 * 53.94769 * 22 2 1 44 44 H 1.09003 * 117.49504 * 145.01820 * 25 23 22 45 45 H 1.08990 * 117.49887 * 359.97438 * 25 23 22 46 46 H 1.09000 * 109.47442 * 180.02562 * 27 26 23 47 47 H 1.08993 * 109.47829 * 300.02276 * 27 26 23 48 48 H 1.09012 * 109.47123 * 60.02008 * 27 26 23 49 49 H 1.09004 * 109.46526 * 299.98247 * 28 26 23 50 50 H 1.09002 * 109.47571 * 59.97650 * 28 26 23 51 51 H 1.08994 * 109.47513 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.1032 1.4136 2.1846 6 7 1.9092 3.3551 1.4752 7 6 1.6611 3.9861 2.7738 8 6 2.8948 3.8721 3.6317 9 1 3.7759 3.3793 3.2478 10 6 2.8993 4.3979 4.9063 11 7 1.8266 4.9984 5.3736 12 14 4.4287 4.2571 5.9695 13 1 5.5637 4.9384 5.2965 14 1 4.1771 4.8967 7.2858 15 1 4.7610 2.8239 6.1714 16 6 2.4291 4.1105 0.4183 17 6 3.7257 3.8861 -0.0256 18 6 4.2336 4.6288 -1.0735 19 6 3.4570 5.6038 -1.6720 20 6 2.1676 5.8340 -1.2283 21 6 1.6518 5.0904 -0.1849 22 6 1.9954 -0.7659 -1.1377 23 6 1.6314 -2.2425 -0.9705 24 1 0.7109 -2.4408 -0.4214 25 6 2.7806 -3.2392 -0.8062 26 6 1.9897 -3.1925 -2.1151 27 6 2.6842 -2.5929 -3.3395 28 6 1.0286 -4.3479 -2.4015 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3634 0.4513 -0.9232 32 1 3.0796 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 1.4174 5.0382 2.6259 35 1 0.8279 3.4860 3.2675 36 1 1.8295 5.3680 6.2705 37 1 4.3346 3.1282 0.4449 38 1 5.2400 4.4509 -1.4228 39 1 3.8581 6.1865 -2.4881 40 1 1.5634 6.5959 -1.6981 41 1 0.6446 5.2704 0.1609 42 1 3.0797 -0.6611 -1.1757 43 1 1.5610 -0.3871 -2.0628 44 1 2.6161 -4.0931 -0.1490 45 1 3.7959 -2.8429 -0.8176 46 1 2.8773 -3.3793 -4.0692 47 1 2.0424 -1.8332 -3.7856 48 1 3.6277 -2.1390 -3.0362 49 1 0.9471 -4.9803 -1.5174 50 1 0.0462 -3.9491 -2.6546 51 1 1.4074 -4.9373 -3.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595915512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:51 Heat of formation + Delta-G solvation = 8.196344 kcal Electronic energy + Delta-G solvation = -28678.864492 eV Core-core repulsion = 24964.481235 eV Total energy + Delta-G solvation = -3714.383257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49463 -40.02055 -39.41951 -37.39906 -36.34868 -34.79409 -31.89285 -31.16694 -30.68896 -29.85907 -28.73346 -28.43483 -27.73196 -25.31819 -24.10349 -23.39206 -23.17004 -21.54257 -20.43975 -19.55283 -18.73441 -18.39591 -17.62178 -17.12375 -16.87037 -16.52328 -16.30080 -16.08206 -15.71714 -15.37532 -15.19851 -14.91556 -14.65678 -14.49672 -14.30584 -14.22589 -13.95165 -13.67463 -13.57541 -13.37761 -13.23586 -13.08548 -13.04404 -12.88621 -12.69627 -12.65856 -12.60928 -12.41327 -12.19759 -12.11545 -12.09274 -11.85182 -11.74195 -10.88751 -10.70416 -10.67859 -10.40371 -10.04957 -9.82441 -9.30624 -9.21637 -8.25808 -6.40879 0.37643 0.50891 1.33845 1.38755 1.45730 1.70007 2.06504 2.36856 2.71013 2.87384 3.03911 3.06776 3.58378 3.71829 3.90718 3.94127 4.05793 4.13115 4.15313 4.22662 4.25605 4.32662 4.35840 4.43675 4.51155 4.60976 4.65951 4.67336 4.72393 4.77065 4.81914 4.85425 4.97325 4.99331 5.03205 5.08520 5.09697 5.11427 5.11612 5.16496 5.30846 5.33453 5.43045 5.51305 5.54724 5.63128 5.67379 5.77172 5.88153 5.99820 6.08123 6.10804 6.65244 6.75074 7.23278 7.39630 8.81466 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.003401 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.316122 B = 8230.425009 C = 9687.537292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.061 3.939 4 C 0.506 3.494 5 O -0.562 6.562 6 N -0.567 5.567 7 C 0.269 3.731 8 C -0.543 4.543 9 H 0.053 0.947 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.968 3.032 13 H -0.260 1.260 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.125 3.875 17 C -0.135 4.135 18 C -0.102 4.102 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.143 4.143 22 C 0.096 3.904 23 C -0.151 4.151 24 H 0.096 0.904 25 C -0.172 4.172 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.115 4.115 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.018 0.982 35 H 0.003 0.997 36 H 0.268 0.732 37 H 0.115 0.885 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.060 0.940 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -8.581 -23.475 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.267 5.267 3 C -0.070 4.070 4 C 0.296 3.704 5 O -0.440 6.440 6 N -0.296 5.296 7 C 0.149 3.851 8 C -0.581 4.581 9 H 0.071 0.929 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.792 3.208 13 H -0.185 1.185 14 H -0.201 1.201 15 H -0.201 1.201 16 C 0.034 3.966 17 C -0.154 4.154 18 C -0.120 4.120 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.162 4.162 22 C -0.031 4.031 23 C -0.169 4.169 24 H 0.114 0.886 25 C -0.209 4.209 26 C -0.118 4.118 27 C -0.172 4.172 28 C -0.172 4.172 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.127 -9.065 -22.386 24.353 hybrid contribution -0.103 0.512 1.018 1.144 sum 3.023 -8.553 -21.368 23.214 Atomic orbital electron populations 1.22395 0.86852 1.02690 1.00008 1.61514 1.08874 1.11697 1.44608 1.21857 1.02422 0.89621 0.93130 1.21172 0.78049 0.81077 0.90144 1.90629 1.43444 1.63947 1.45998 1.45805 1.62637 1.09180 1.11959 1.18773 0.95872 0.91539 0.78962 1.21592 0.99236 1.37413 0.99870 0.92897 1.25860 0.99902 0.94395 0.98841 1.70049 1.30111 1.38384 1.18183 0.85458 0.79144 0.78432 0.77762 1.18496 1.20106 1.20103 1.18017 0.93601 0.95452 0.89503 1.21434 0.93228 1.01968 0.98819 1.21361 1.00989 0.95068 0.94596 1.21560 0.93694 0.97770 1.00687 1.21327 0.96731 0.98790 0.95395 1.21396 0.99846 0.97332 0.97675 1.21668 0.99878 0.91376 0.90195 1.22358 1.00095 0.91072 1.03408 0.88601 1.23332 0.96388 1.01429 0.99779 1.21750 1.00930 0.98692 0.90381 1.21371 0.99571 1.00853 0.95449 1.21375 0.98022 0.95768 1.02026 0.90165 0.93430 0.94652 0.86857 0.90970 0.96442 0.97887 0.92301 0.86680 0.82745 0.82242 0.83099 0.87173 0.90190 0.93262 0.89050 0.88718 0.91012 0.91999 0.92300 0.92709 0.92146 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.02 127.69 1.15 2.02 16 2 N -0.54 -16.90 4.46 -927.04 -4.14 -21.03 16 3 C 0.06 1.98 4.00 85.56 0.34 2.32 16 4 C 0.51 22.76 7.14 87.66 0.63 23.38 16 5 O -0.56 -30.47 14.21 -3.08 -0.04 -30.51 16 6 N -0.57 -26.14 2.50 -635.31 -1.59 -27.73 16 7 C 0.27 15.27 5.15 85.63 0.44 15.71 16 8 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 9 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 10 C 0.01 0.54 5.46 84.65 0.46 1.00 16 11 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 12 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 C 0.12 4.61 4.32 38.15 0.16 4.77 16 17 C -0.13 -4.16 8.56 22.39 0.19 -3.97 16 18 C -0.10 -2.27 10.04 22.25 0.22 -2.04 16 19 C -0.12 -2.34 10.04 22.29 0.22 -2.11 16 20 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 21 C -0.14 -4.58 9.75 22.39 0.22 -4.37 16 22 C 0.10 2.18 4.32 86.30 0.37 2.56 16 23 C -0.15 -3.23 5.41 -10.79 -0.06 -3.29 16 24 H 0.10 2.29 6.38 -2.39 -0.02 2.28 16 25 C -0.17 -3.36 9.47 30.60 0.29 -3.07 16 26 C -0.12 -1.93 2.70 -52.18 -0.14 -2.07 16 27 C -0.12 -1.55 8.86 71.98 0.64 -0.91 16 28 C -0.11 -1.61 9.85 71.98 0.71 -0.90 16 29 H 0.08 2.18 6.33 -2.39 -0.02 2.16 16 30 H 0.05 1.81 6.04 -2.39 -0.01 1.80 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 3.34 6.93 -2.39 -0.02 3.32 16 33 H 0.07 2.10 7.82 -2.39 -0.02 2.08 16 34 H 0.02 1.03 7.90 -2.39 -0.02 1.01 16 35 H 0.00 0.20 7.36 -2.38 -0.02 0.18 16 36 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.12 3.65 7.75 -2.91 -0.02 3.63 16 38 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.08 1.71 7.66 -2.39 -0.02 1.70 16 43 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 44 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 45 H 0.09 1.80 7.94 -2.39 -0.02 1.78 16 46 H 0.07 0.78 7.92 -2.39 -0.02 0.77 16 47 H 0.06 0.80 7.83 -2.39 -0.02 0.79 16 48 H 0.06 0.79 7.90 -2.38 -0.02 0.77 16 49 H 0.05 0.79 7.90 -2.38 -0.02 0.77 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.07 0.82 7.92 -2.39 -0.02 0.81 16 Total: -1.00 -76.15 410.86 3.75 -72.40 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.89 Total: 21.44 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.32 Total: -5.40 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.44 Total: -106.00 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.04 Total: -30.51 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.15 3.75 -72.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.592 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds