Wall clock time and date at job start Tue Mar 31 2020 16:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00132 * 2 1 4 4 C 1.50702 * 109.47189 * 66.04483 * 3 2 1 5 5 O 1.21285 * 119.99669 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00168 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99912 * 355.26452 * 6 4 3 8 8 C 1.50696 * 109.46953 * 89.99845 * 7 6 4 9 9 H 1.07998 * 120.00296 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99739 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00398 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00027 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47215 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47121 * 120.00007 * 12 10 8 15 15 H 1.48498 * 109.47207 * 240.00213 * 12 10 8 16 16 C 1.39919 * 120.00109 * 175.26721 * 6 4 3 17 17 C 1.38876 * 120.06826 * 291.84707 * 16 6 4 18 18 C 1.38117 * 119.92608 * 179.79515 * 17 16 6 19 19 C 1.38287 * 120.06960 * 0.47905 * 18 17 16 20 20 C 1.38283 * 120.14293 * 359.75497 * 19 18 17 21 21 C 1.38112 * 120.06785 * 0.02562 * 20 19 18 22 22 C 1.46904 * 111.00283 * 236.04187 * 2 1 3 23 23 C 1.52998 * 109.46960 * 293.95728 * 22 2 1 24 24 H 1.08990 * 115.55399 * 330.57648 * 23 22 2 25 25 C 1.53003 * 117.49892 * 116.25602 * 23 22 2 26 26 C 1.53008 * 117.49365 * 184.90972 * 23 22 2 27 27 C 1.52996 * 117.50061 * 359.97438 * 26 23 22 28 28 C 1.52998 * 117.49584 * 145.02235 * 26 23 22 29 29 H 1.08997 * 109.46742 * 60.00272 * 1 2 3 30 30 H 1.09006 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47204 * 299.99987 * 1 2 3 32 32 H 1.09002 * 109.46953 * 186.04439 * 3 2 1 33 33 H 1.08997 * 109.46811 * 306.04330 * 3 2 1 34 34 H 1.08997 * 109.47122 * 210.00262 * 7 6 4 35 35 H 1.09003 * 109.46745 * 330.00363 * 7 6 4 36 36 H 0.96997 * 120.00738 * 179.97438 * 11 10 8 37 37 H 1.07996 * 120.03668 * 0.02589 * 17 16 6 38 38 H 1.07996 * 119.96207 * 180.23272 * 18 17 16 39 39 H 1.07995 * 119.92553 * 179.76727 * 19 18 17 40 40 H 1.07992 * 119.96644 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.03451 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.46793 * 53.95466 * 22 2 1 43 43 H 1.09001 * 109.47298 * 173.95413 * 22 2 1 44 44 H 1.08998 * 117.49800 * 214.97793 * 25 23 22 45 45 H 1.09005 * 117.49828 * 359.96509 * 25 23 22 46 46 H 1.09005 * 109.46938 * 60.00202 * 27 26 23 47 47 H 1.09000 * 109.47009 * 179.97438 * 27 26 23 48 48 H 1.08997 * 109.47124 * 300.00254 * 27 26 23 49 49 H 1.08994 * 109.47686 * 60.00005 * 28 26 23 50 50 H 1.08996 * 109.47287 * 179.97438 * 28 26 23 51 51 H 1.09002 * 109.47042 * 299.99649 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0180 3.3202 1.5233 7 6 2.8683 4.0127 0.5518 8 6 2.0029 4.7166 -0.4613 9 1 0.9271 4.6547 -0.3887 10 6 2.5845 5.4406 -1.4805 11 7 3.8945 5.5164 -1.5687 12 14 1.5118 6.3137 -2.7360 13 1 0.0814 6.0745 -2.4167 14 1 1.7903 7.7718 -2.6964 15 1 1.8110 5.7893 -4.0927 16 6 1.6016 3.9804 2.6846 17 6 0.2633 4.3090 2.8562 18 6 -0.1452 4.9569 4.0056 19 6 0.7784 5.2872 4.9803 20 6 2.1126 4.9657 4.8102 21 6 2.5267 4.3138 3.6652 22 6 1.9955 -0.7661 -1.1375 23 6 1.6315 -2.2427 -0.9702 24 1 1.5341 -2.5892 0.0585 25 6 0.7037 -2.8644 -2.0160 26 6 2.1903 -3.2288 -1.9980 27 6 3.0698 -2.6628 -3.1146 28 6 2.5691 -4.6261 -1.5029 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0797 1.3443 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 3.4900 4.7436 1.0690 35 1 3.5052 3.2879 0.0447 36 1 4.3037 6.0254 -2.2859 37 1 -0.4579 4.0548 2.0936 38 1 -1.1865 5.2093 4.1414 39 1 0.4571 5.7971 5.8764 40 1 2.8315 5.2254 5.5730 41 1 3.5688 4.0634 3.5327 42 1 1.5612 -0.3874 -2.0628 43 1 3.0798 -0.6612 -1.1756 44 1 -0.0038 -3.6203 -1.6752 45 1 0.3523 -2.2214 -2.8229 46 1 3.9423 -2.1760 -2.6785 47 1 3.3947 -3.4731 -3.7673 48 1 2.4996 -1.9360 -3.6932 49 1 1.6890 -5.1142 -1.0844 50 1 2.9493 -5.2162 -2.3367 51 1 3.3384 -4.5434 -0.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595915514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:55 Heat of formation + Delta-G solvation = 21.649243 kcal Electronic energy + Delta-G solvation = -28662.435173 eV Core-core repulsion = 24948.635277 eV Total energy + Delta-G solvation = -3713.799895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94038 -39.01438 -37.99506 -35.91761 -34.92441 -32.68523 -30.49829 -30.23488 -29.52778 -27.91412 -27.63120 -26.93726 -26.85194 -23.31919 -23.10999 -22.02251 -21.54954 -20.64441 -18.88078 -18.48652 -16.96584 -16.69381 -16.20309 -15.63112 -15.51530 -14.96407 -14.92083 -14.68853 -14.41131 -14.09339 -13.98153 -13.64857 -13.43714 -13.34840 -12.99584 -12.68768 -12.53425 -12.46392 -12.28525 -12.10094 -12.08172 -11.87374 -11.65899 -11.40487 -11.38617 -11.25672 -11.13893 -11.00817 -10.99606 -10.81192 -10.74571 -10.26572 -9.84540 -9.78289 -9.57113 -9.10669 -8.63924 -8.56390 -8.49535 -7.98554 -7.64338 -6.25356 -4.32861 1.77034 1.84490 3.16566 3.25280 3.27461 3.34055 3.53722 3.73613 4.19679 4.28519 4.32627 4.68126 4.71640 4.89361 5.01181 5.08242 5.30479 5.32343 5.36890 5.38033 5.49253 5.50812 5.53030 5.65014 5.70282 5.74856 5.78137 5.81429 5.83416 5.85158 5.87840 5.95532 5.98352 6.01483 6.04776 6.05657 6.13666 6.21785 6.35153 6.42389 6.44573 6.67002 6.84274 6.88878 6.94256 7.10609 7.23551 7.26430 7.37147 7.65254 7.74364 7.96045 8.18997 8.71570 8.97991 9.35040 10.81452 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.003717 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.247137 B = 7530.356592 C = 9613.469005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.524 5.524 3 C 0.043 3.957 4 C 0.525 3.475 5 O -0.542 6.542 6 N -0.565 5.565 7 C 0.239 3.761 8 C -0.538 4.538 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.179 3.821 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.125 4.125 22 C 0.087 3.913 23 C -0.130 4.130 24 H 0.112 0.888 25 C -0.177 4.177 26 C -0.129 4.129 27 C -0.116 4.116 28 C -0.113 4.113 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -11.005 2.175 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.248 5.248 3 C -0.087 4.087 4 C 0.314 3.686 5 O -0.419 6.419 6 N -0.294 5.294 7 C 0.121 3.879 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.088 3.912 17 C -0.127 4.127 18 C -0.133 4.133 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.040 4.040 23 C -0.149 4.149 24 H 0.130 0.870 25 C -0.214 4.214 26 C -0.129 4.129 27 C -0.173 4.173 28 C -0.170 4.170 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.832 -11.481 2.888 12.173 hybrid contribution -0.714 1.174 -1.685 2.175 sum -3.547 -10.307 1.203 10.966 Atomic orbital electron populations 1.22509 0.86998 1.01689 1.01367 1.61634 1.08591 1.12481 1.42136 1.21942 1.02022 0.88708 0.96004 1.20394 0.78959 0.80896 0.88353 1.90597 1.40616 1.64264 1.46470 1.45964 1.51224 1.12130 1.20072 1.19557 0.89469 0.92724 0.86179 1.21467 0.93571 1.31917 1.10663 0.92038 1.24911 0.95017 0.95998 0.97680 1.69918 1.08947 1.41067 1.32815 0.86481 0.80721 0.79574 0.80992 1.19649 1.20711 1.20781 1.17561 0.92364 0.94408 0.86874 1.21220 0.95552 0.98193 0.97759 1.20933 0.99231 0.99199 0.93907 1.21002 0.93453 1.01772 0.99255 1.20900 0.95893 0.99228 0.97232 1.21218 0.99664 1.00296 0.93259 1.21647 1.00035 0.90970 0.91386 1.22418 1.03113 0.93351 0.95970 0.87028 1.23347 0.92348 1.03596 1.02070 1.21608 0.95405 0.96168 0.99760 1.21343 0.99124 1.00453 0.96404 1.21330 1.01312 0.93559 1.00793 0.96435 0.91799 0.89624 0.88078 0.90321 0.94267 0.94081 0.92473 0.86449 0.86395 0.86575 0.86291 0.86105 0.94671 0.90414 0.89145 0.89092 0.91981 0.92414 0.92421 0.92649 0.92378 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.04 60.06 0.54 0.90 16 2 N -0.52 -8.70 4.50 -244.37 -1.10 -9.80 16 3 C 0.04 0.80 4.11 -4.97 -0.02 0.78 16 4 C 0.53 11.00 7.25 -10.99 -0.08 10.92 16 5 O -0.54 -12.23 14.08 5.55 0.08 -12.15 16 6 N -0.57 -12.14 2.50 -114.74 -0.29 -12.43 16 7 C 0.24 5.61 4.88 -5.19 -0.03 5.58 16 8 C -0.54 -13.71 9.16 -34.44 -0.32 -14.03 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 12 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.18 3.67 4.74 -83.70 -0.40 3.27 16 17 C -0.11 -2.06 9.56 -39.39 -0.38 -2.44 16 18 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 19 C -0.14 -2.01 10.04 -39.55 -0.40 -2.41 16 20 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 21 C -0.12 -2.28 9.69 -39.39 -0.38 -2.66 16 22 C 0.09 1.21 4.32 -3.82 -0.02 1.19 16 23 C -0.13 -1.57 4.46 -90.62 -0.40 -1.97 16 24 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 25 C -0.18 -1.87 9.47 -26.69 -0.25 -2.13 16 26 C -0.13 -1.33 2.70 -154.47 -0.42 -1.75 16 27 C -0.12 -1.14 8.86 37.16 0.33 -0.81 16 28 C -0.11 -1.01 9.85 37.16 0.37 -0.64 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.91 7.17 -51.93 -0.37 0.54 16 31 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 32 H 0.10 1.80 7.05 -51.93 -0.37 1.44 16 33 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 34 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 35 H 0.04 0.97 6.47 -51.93 -0.34 0.63 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 43 H 0.08 1.06 7.56 -51.93 -0.39 0.67 16 44 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 45 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 46 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 47 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 48 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 49 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 50 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 412.95 15.07 6.22 6.22 Total: -1.00 -28.56 412.95 -10.92 -39.48 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.81 Total: 5.59 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.74 Total: -8.92 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.65 Total: -45.47 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -28.56 -10.92 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.125 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds