Wall clock time and date at job start Tue Mar 31 2020 16:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00132 * 2 1 4 4 C 1.50702 * 109.47189 * 66.04483 * 3 2 1 5 5 O 1.21285 * 119.99669 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00168 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99912 * 355.26452 * 6 4 3 8 8 C 1.50696 * 109.46953 * 89.99845 * 7 6 4 9 9 H 1.07998 * 120.00296 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99739 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00398 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00027 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47215 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47121 * 120.00007 * 12 10 8 15 15 H 1.48498 * 109.47207 * 240.00213 * 12 10 8 16 16 C 1.39919 * 120.00109 * 175.26721 * 6 4 3 17 17 C 1.38876 * 120.06826 * 291.84707 * 16 6 4 18 18 C 1.38117 * 119.92608 * 179.79515 * 17 16 6 19 19 C 1.38287 * 120.06960 * 0.47905 * 18 17 16 20 20 C 1.38283 * 120.14293 * 359.75497 * 19 18 17 21 21 C 1.38112 * 120.06785 * 0.02562 * 20 19 18 22 22 C 1.46904 * 111.00283 * 236.04187 * 2 1 3 23 23 C 1.52998 * 109.46960 * 293.95728 * 22 2 1 24 24 H 1.08990 * 115.55399 * 330.57648 * 23 22 2 25 25 C 1.53003 * 117.49892 * 116.25602 * 23 22 2 26 26 C 1.53008 * 117.49365 * 184.90972 * 23 22 2 27 27 C 1.52996 * 117.50061 * 359.97438 * 26 23 22 28 28 C 1.52998 * 117.49584 * 145.02235 * 26 23 22 29 29 H 1.08997 * 109.46742 * 60.00272 * 1 2 3 30 30 H 1.09006 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47204 * 299.99987 * 1 2 3 32 32 H 1.09002 * 109.46953 * 186.04439 * 3 2 1 33 33 H 1.08997 * 109.46811 * 306.04330 * 3 2 1 34 34 H 1.08997 * 109.47122 * 210.00262 * 7 6 4 35 35 H 1.09003 * 109.46745 * 330.00363 * 7 6 4 36 36 H 0.96997 * 120.00738 * 179.97438 * 11 10 8 37 37 H 1.07996 * 120.03668 * 0.02589 * 17 16 6 38 38 H 1.07996 * 119.96207 * 180.23272 * 18 17 16 39 39 H 1.07995 * 119.92553 * 179.76727 * 19 18 17 40 40 H 1.07992 * 119.96644 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.03451 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.46793 * 53.95466 * 22 2 1 43 43 H 1.09001 * 109.47298 * 173.95413 * 22 2 1 44 44 H 1.08998 * 117.49800 * 214.97793 * 25 23 22 45 45 H 1.09005 * 117.49828 * 359.96509 * 25 23 22 46 46 H 1.09005 * 109.46938 * 60.00202 * 27 26 23 47 47 H 1.09000 * 109.47009 * 179.97438 * 27 26 23 48 48 H 1.08997 * 109.47124 * 300.00254 * 27 26 23 49 49 H 1.08994 * 109.47686 * 60.00005 * 28 26 23 50 50 H 1.08996 * 109.47287 * 179.97438 * 28 26 23 51 51 H 1.09002 * 109.47042 * 299.99649 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0180 3.3202 1.5233 7 6 2.8683 4.0127 0.5518 8 6 2.0029 4.7166 -0.4613 9 1 0.9271 4.6547 -0.3887 10 6 2.5845 5.4406 -1.4805 11 7 3.8945 5.5164 -1.5687 12 14 1.5118 6.3137 -2.7360 13 1 0.0814 6.0745 -2.4167 14 1 1.7903 7.7718 -2.6964 15 1 1.8110 5.7893 -4.0927 16 6 1.6016 3.9804 2.6846 17 6 0.2633 4.3090 2.8562 18 6 -0.1452 4.9569 4.0056 19 6 0.7784 5.2872 4.9803 20 6 2.1126 4.9657 4.8102 21 6 2.5267 4.3138 3.6652 22 6 1.9955 -0.7661 -1.1375 23 6 1.6315 -2.2427 -0.9702 24 1 1.5341 -2.5892 0.0585 25 6 0.7037 -2.8644 -2.0160 26 6 2.1903 -3.2288 -1.9980 27 6 3.0698 -2.6628 -3.1146 28 6 2.5691 -4.6261 -1.5029 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0797 1.3443 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 3.4900 4.7436 1.0690 35 1 3.5052 3.2879 0.0447 36 1 4.3037 6.0254 -2.2859 37 1 -0.4579 4.0548 2.0936 38 1 -1.1865 5.2093 4.1414 39 1 0.4571 5.7971 5.8764 40 1 2.8315 5.2254 5.5730 41 1 3.5688 4.0634 3.5327 42 1 1.5612 -0.3874 -2.0628 43 1 3.0798 -0.6612 -1.1756 44 1 -0.0038 -3.6203 -1.6752 45 1 0.3523 -2.2214 -2.8229 46 1 3.9423 -2.1760 -2.6785 47 1 3.3947 -3.4731 -3.7673 48 1 2.4996 -1.9360 -3.6932 49 1 1.6890 -5.1142 -1.0844 50 1 2.9493 -5.2162 -2.3367 51 1 3.3384 -4.5434 -0.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595915514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:54 Heat of formation + Delta-G solvation = 8.395826 kcal Electronic energy + Delta-G solvation = -28663.009884 eV Core-core repulsion = 24948.635277 eV Total energy + Delta-G solvation = -3714.374607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49759 -40.06206 -39.32513 -37.23112 -36.63088 -34.61970 -31.82564 -31.58899 -30.59697 -29.29123 -28.79150 -28.55323 -27.85680 -25.09019 -24.52687 -23.39468 -22.85646 -21.68589 -20.31613 -19.49757 -18.74412 -18.42430 -17.75363 -17.02922 -16.91671 -16.34010 -16.29471 -16.16727 -15.81175 -15.30861 -15.17209 -14.80580 -14.67618 -14.44613 -14.39378 -14.30125 -13.87351 -13.69354 -13.60838 -13.41026 -13.26516 -13.05274 -12.88672 -12.87480 -12.77288 -12.59954 -12.54436 -12.50514 -12.23417 -12.16193 -12.07937 -11.92101 -11.71799 -10.83732 -10.68567 -10.61858 -10.39035 -10.11037 -9.83345 -9.36349 -9.21810 -8.25221 -6.39988 0.40820 0.50533 1.35822 1.39202 1.49053 1.66262 2.06564 2.36755 2.74574 2.88091 3.02230 3.05121 3.73144 3.78203 3.87296 3.95704 4.04444 4.10539 4.19629 4.25201 4.27284 4.28775 4.42179 4.47277 4.53635 4.58189 4.61852 4.67902 4.68348 4.77535 4.83338 4.86744 4.94594 4.95910 5.06842 5.07390 5.08714 5.09187 5.12652 5.13083 5.29777 5.33067 5.46785 5.50011 5.55574 5.59333 5.67411 5.77869 5.90246 5.98671 6.10205 6.20708 6.45994 6.72128 7.25680 7.36012 8.80619 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.003717 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.247137 B = 7530.356592 C = 9613.469005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.531 5.531 3 C 0.053 3.947 4 C 0.520 3.480 5 O -0.561 6.561 6 N -0.566 5.566 7 C 0.257 3.743 8 C -0.545 4.545 9 H 0.049 0.951 10 C 0.027 3.973 11 N -0.916 5.916 12 Si 0.954 3.046 13 H -0.273 1.273 14 H -0.277 1.277 15 H -0.273 1.273 16 C 0.137 3.863 17 C -0.133 4.133 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.144 4.144 22 C 0.091 3.909 23 C -0.144 4.144 24 H 0.102 0.898 25 C -0.170 4.170 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.112 4.112 29 H 0.018 0.982 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.036 0.964 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.119 0.881 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 -11.124 2.631 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.077 4.077 4 C 0.310 3.690 5 O -0.440 6.440 6 N -0.294 5.294 7 C 0.137 3.863 8 C -0.583 4.583 9 H 0.067 0.933 10 C -0.174 4.174 11 N -0.555 5.555 12 Si 0.779 3.221 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.199 1.199 16 C 0.046 3.954 17 C -0.153 4.153 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.164 4.164 22 C -0.036 4.036 23 C -0.163 4.163 24 H 0.120 0.880 25 C -0.206 4.206 26 C -0.121 4.121 27 C -0.175 4.175 28 C -0.169 4.169 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.166 0.834 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.137 0.863 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.507 -11.604 3.351 12.577 hybrid contribution -0.514 1.227 -1.721 2.175 sum -4.021 -10.377 1.630 11.248 Atomic orbital electron populations 1.22400 0.86725 1.02524 1.00106 1.61669 1.08934 1.11235 1.43716 1.21803 1.02090 0.89650 0.94167 1.20787 0.78547 0.80754 0.88902 1.90566 1.41514 1.64555 1.47357 1.45891 1.50866 1.12256 1.20364 1.19180 0.89168 0.91987 0.85969 1.21580 0.93107 1.32288 1.11343 0.93263 1.25584 0.96081 0.96526 0.99228 1.69998 1.10185 1.41753 1.33582 0.85571 0.78980 0.78529 0.79030 1.19764 1.20296 1.19881 1.17966 0.93622 0.96433 0.87372 1.21283 0.94837 1.00049 0.99133 1.21323 1.01224 0.97757 0.92776 1.21519 0.92674 1.00179 0.99959 1.21354 0.97278 0.97411 0.96586 1.21401 0.99350 1.01416 0.94227 1.21667 0.99853 0.91836 0.90251 1.22258 1.05550 0.92353 0.96105 0.88035 1.23397 0.92773 1.03399 1.01067 1.21737 0.95351 0.96263 0.98713 1.21377 0.98801 1.00907 0.96428 1.21354 1.01574 0.92739 1.01281 0.96302 0.89818 0.92169 0.87797 0.91701 0.96231 0.94645 0.92149 0.88195 0.83403 0.82200 0.82706 0.86334 0.94679 0.90518 0.87978 0.89127 0.92418 0.90845 0.92853 0.92124 0.91008 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.04 127.69 1.15 2.15 16 2 N -0.53 -18.16 4.50 -927.05 -4.17 -22.33 16 3 C 0.05 2.08 4.11 85.56 0.35 2.43 16 4 C 0.52 22.95 7.25 87.66 0.64 23.59 16 5 O -0.56 -26.47 14.08 -3.04 -0.04 -26.51 16 6 N -0.57 -25.59 2.50 -635.30 -1.59 -27.18 16 7 C 0.26 12.62 4.88 85.63 0.42 13.04 16 8 C -0.54 -28.72 9.16 25.60 0.23 -28.48 16 9 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 10 C 0.03 1.40 5.46 84.66 0.46 1.86 16 11 N -0.92 -50.10 13.29 21.45 0.28 -49.81 16 12 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 C 0.14 5.80 4.74 38.15 0.18 5.98 16 17 C -0.13 -5.24 9.56 22.39 0.21 -5.03 16 18 C -0.11 -3.42 10.04 22.25 0.22 -3.20 16 19 C -0.13 -3.29 10.04 22.29 0.22 -3.07 16 20 C -0.11 -3.10 10.04 22.25 0.22 -2.88 16 21 C -0.14 -5.33 9.69 22.39 0.22 -5.11 16 22 C 0.09 2.55 4.32 86.30 0.37 2.92 16 23 C -0.14 -3.40 4.46 -10.79 -0.05 -3.45 16 24 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 25 C -0.17 -3.35 9.47 30.62 0.29 -3.06 16 26 C -0.12 -2.32 2.70 -52.16 -0.14 -2.46 16 27 C -0.12 -2.17 8.86 71.98 0.64 -1.53 16 28 C -0.11 -1.80 9.85 71.98 0.71 -1.09 16 29 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 2.38 7.17 -2.38 -0.02 2.36 16 31 H 0.06 2.30 5.88 -2.39 -0.01 2.28 16 32 H 0.10 3.91 7.05 -2.39 -0.02 3.89 16 33 H 0.07 2.68 7.89 -2.39 -0.02 2.66 16 34 H 0.02 1.03 7.86 -2.39 -0.02 1.01 16 35 H 0.04 1.76 6.47 -2.39 -0.02 1.75 16 36 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.04 0.98 7.85 -2.39 -0.02 0.96 16 43 H 0.08 2.13 7.56 -2.39 -0.02 2.11 16 44 H 0.10 1.79 8.05 -2.39 -0.02 1.77 16 45 H 0.09 1.81 7.94 -2.38 -0.02 1.79 16 46 H 0.06 1.11 7.84 -2.38 -0.02 1.09 16 47 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 48 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 49 H 0.06 0.91 7.90 -2.39 -0.02 0.89 16 50 H 0.07 0.96 7.92 -2.39 -0.02 0.94 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -63.03 412.95 3.75 -59.29 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.88 Total: 30.06 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 6.36 Total: -7.38 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -5.48 Total: -99.32 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -63.03 3.75 -59.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.683 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds